Pregenerated sensors for LINC01845 (Homo sapiens)
Ensembl gene IDs: ENSG00000253298Ensembl transcript IDs: ENST00000518418.1, ENST00000658947.1
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACTGTGCCGGCATGGGTGACGAGAACACAGCTAGACCAGCCAGGATaGCAGGTGTTACCTGCCTGGAACAGATGCCCTTCCCAAGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: TVPAWVTRTQLDQPG*QVLPAWNRCPSQGR Trigger: CCTTCCTTGGGAAGGGCATCTGTTCCAGGCAGGTAACACCTGTCATCCTGGCTGGTCTAGCTGTGTTCTCGTCACCCATGCCGGCACAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS TCA 90 bp | CCAATGCCCAGCCATGACATTGGGTGTTACCTAGACCAGCCAGGATaGCAGGTGTTACCTGCCTGGAACAGATGCCCTTCCCAAGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: PMPSHDIGCYLDQPG*QVLPAWNRCPSQGR Trigger: CCTTCCTTGGGAAGGGCATCTGTTCCAGGCAGGTAACACCTGTCATCCTGGCTGGTCTAGGTAACACCCAATGTCATGGCTGGGCATTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS GCA 90 bp | GGTGACGAGAACACAGCTAGACCAGCCAGGATGACAGGTGTTACCTaGCTGGAACAGATGCCCTTCCCAAGGAAGGGGAGAACAAGTCAG | + |
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Preference number: 5 (lower is better) Translates to: GDENTARPARMTGVT*LEQMPFPRKGRTSQ Trigger: CTGACTTGTTCTCCCCTTCCTTGGGAAGGGCATCTGTTCCAGGCAGGTAACACCTGTCATCCTGGCTGGTCTAGCTGTGTTCTCGTCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CCA 90 bp | TGGTCGGTGGGCAGGACACACCTGAAGGAGCATATCTTGGCTGTGTaGGTTGGGCAGACATCCCACAATGCTCATGTAGGGGGATTCATC | + |
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Preference number: 5 (lower is better) Translates to: WSVGRTHLKEHILAV*VGQTSHNAHVGGFI Trigger: GATGAATCCCCCTACATGAGCATTGTGGGATGTCTGCCCAACCCACACAGCCAAGATATGCTCCTTCAGGTGTGTCCTGCCCACCGACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS TCA 90 bp | AAATTCTGTGGTTCAGTCAGCTGTGGTCGGTGGGCAGGACACACCTaGAGGAGCATATCTTGGCTGTGTGGGTTGGGCAGACATCCCACA | + |
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Preference number: 5 (lower is better) Translates to: KFCGSVSCGRWAGHT*RSISWLCGLGRHPT Trigger: TGTGGGATGTCTGCCCAACCCACACAGCCAAGATATGCTCCTTCAGGTGTGTCCTGCCCACCGACCACAGCTGACTGAACCACAGAATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CCA 90 bp | GGTGGGCAGGACACACCTGAAGGAGCATATCTTGGCTGTGTGGGTTaGGCAGACATCCCACAATGCTCATGTAGGGGGATTCATCTCATT | + |
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Preference number: 5 (lower is better) Translates to: GGQDTPEGAYLGCVG*ADIPQCSCRGIHLI Trigger: AATGAGATGAATCCCCCTACATGAGCATTGTGGGATGTCTGCCCAACCCACACAGCCAAGATATGCTCCTTCAGGTGTGTCCTGCCCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS GCA 90 bp | ACCAAGTGGAGGCCGAGTCACAGGGAGGACAACCTACATTTACTGTaGCACTGTCGCATCAGCTGTGGACACTTTAGAAGTGTGTGTGAT | + |
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Preference number: 5 (lower is better) Translates to: TKWRPSHREDNLHLL*HCRISCGHFRSVCD Trigger: ATCACACACACTTCTAAAGTGTCCACAGCTGATGCGACAGTGGCACAGTAAATGTAGGTTGTCCTCCCTGTGACTCGGCCTCCACTTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS GCA 90 bp | GGAAGGCAAGGGGGAGTCACTGAAGAGTCTTACACAGAGCGGCGATaGTCATGTTTACATTTGGCAGAGATCTTTACTCCACTCATATTC | + |
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Preference number: 5 (lower is better) Translates to: GRQGGVTEESYTERR*SCLHLAEIFTPLIF Trigger: GAATATGAGTGGAGTAAAGATCTCTGCCAAATGTAAACATGAGCATCGCCGCTCTGTGTAAGACTCTTCAGTGACTCCCCCTTGCCTTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS TCA 90 bp | TTGATTTCATGGGGTGCCCTGTCAAATAATTGTGAAAGAAGAACATaGAGCAGGACTACTGTGGGTGGGAAAGCCCCATACTTACCTGCC | + |
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Preference number: 5 (lower is better) Translates to: LISWGALSNNCERRT*SRTTVGGKAPYLPA Trigger: GGCAGGTAAGTATGGGGCTTTCCCACCCACAGTAGTCCTGCTTCATGTTCTTCTTTCACAATTATTTGACAGGGCACCCCATGAAATCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS TCA 90 bp | AAGGTAGTTAAGAAGTCAGAACCAGTTATTTGCATGGGATCATTGTaGTGTGGTTTGAGGGGACACTGTGGCAGAGTCTTAGTATGGATG | + |
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Preference number: 5 (lower is better) Translates to: KVVKKSEPVICMGSL*CGLRGHCGRVLVWM Trigger: CATCCATACTAAGACTCTGCCACAGTGTCCCCTCAAACCACATCACAATGATCCCATGCAAATAACTGGTTCTGACTTCTTAACTACCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS GCA 90 bp | GCAGAGATCTTTACTCCACTCATATTCTCTCAAATATGTTGTATGTaGACGAAGCCTTCCTATTTGCCTATGCTTAAGCTCTTGAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: AEIFTPLIFSQICCM*TKPSYLPMLKLLKL Trigger: GAGCTTCAAGAGCTTAAGCATAGGCAAATAGGAAGGCTTCGTGCACATACAACATATTTGAGAGAATATGAGTGGAGTAAAGATCTCTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS GCA 90 bp | AATCTTTGTAAGATGGATAGAGCACTTTCTCTGTGCCAGGCCCCATaGTTAATGTCTTATGTACATTTTCTCCTTGGATACTCTAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: NLCKMDRALSLCQAP*LMSYVHFLLGYSKD Trigger: ATCCTTAGAGTATCCAAGGAGAAAATGTACATAAGACATTAAGCATGGGGCCTGGCACAGAGAAAGTGCTCTATCCATCTTACAAAGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS TCA 90 bp | AAATCAGATCTGCCACTTTATCTAAAACACAAAAGCTTACTCTCATaGTTCTATGAAGACTGCTGCAGTTCTAGGTACTCCAGACAGATG | + |
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Preference number: 5 (lower is better) Translates to: KSDLPLYLKHKSLLS*FYEDCCSSRYSRQM Trigger: CATCTGTCTGGAGTACCTAGAACTGCAGCAGTCTTCATAGAATCATGAGAGTAAGCTTTTGTGTTTTAGATAAAGTGGCAGATCTGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000518418.1 ENST00000658947.1 |
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| CDS TCA 90 bp | CACCCATCAATTTCAAAACCACTTCCTAAATCTGACTTAGCCACTTaGTTTCATGGGGTGCCCTGTCAAATAATTGTGAAAGAAGAACAT | + |
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Preference number: 5 (lower is better) Translates to: HPSISKPLPKSDLAT*FHGVPCQIIVKEEH Trigger: ATGTTCTTCTTTCACAATTATTTGACAGGGCACCCCATGAAATCAAGTGGCTAAGTCAGATTTAGGAAGTGGTTTTGAAATTGATGGGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CCA 90 bp | CTCGTTAAAGACTCTATCTACAAATACAGTCATGTTCTGAATTACTaGAGGCTGGGGCTTCAATGTATGAATTTTATGGGACACAATTCA | + |
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Preference number: 5 (lower is better) Translates to: LVKDSIYKYSHVLNY*RLGLQCMNFMGHNS Trigger: TGAATTGTGTCCCATAAAATTCATACATTGAAGCCCCAGCCTCCAGTAATTCAGAACATGACTGTATTTGTAGATAGAGTCTTTAACGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS TCA 90 bp | AAGGACTTATCTTCAGGAAGATTGGATTTTATGCCTCAAAATGAATaGATTCAGCAAAGAATTTCTGAGCTCTTCTTACGTGTAAGGTAC | + |
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Preference number: 5 (lower is better) Translates to: KDLSSGRLDFMPQNE*IQQRISELFLRVRY Trigger: GTACCTTACACGTAAGAAGAGCTCAGAAATTCTTTGCTGAATTCATTCATTTTGAGGCATAAAATCCAATCTTCCTGAAGATAAGTCCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS TCA 72 bp | GGTTCAGTCAGCTGTGGTCGGTGGGCAGGACACACCTaGAGGAGCATATCTTGGCTGTGTGGGTTGGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: GSVSCGRWAGHT*RSISWLCGLGR Trigger: TCTGCCCAACCCACACAGCCAAGATATGCTCCTTCAGGTGTGTCCTGCCCACCGACCACAGCTGACTGAACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CCA 72 bp | AGCAATGTAGATGCCCAGGTGAGAGTGGGGCCAGCCTaGAGTGGAGAGGGCATTGAGCACACAGCTAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: SNVDAQVRVGPA*SGEGIEHTARV Trigger: CACTCTAGCTGTGTGCTCAATGCCCTCTCCACTCCAGGCTGGCCCCACTCTCACCTGGGCATCTACATTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CAA 90 bp | AGTCAGCTGTGGTCGGTGGGCAGGACACACCTGAAGGAGCATATCTaGGCTGTGTGGGTTGGGCAGACATCCCACAATGCTCATGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: SQLWSVGRTHLKEHI*AVWVGQTSHNAHVG Trigger: CCCTACATGAGCATTGTGGGATGTCTGCCCAACCCACACAGCCAAGATATGCTCCTTCAGGTGTGTCCTGCCCACCGACCACAGCTGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS GCA 72 bp | CCTGGGAAGAGACCACTTGTCTGTTGGGGTGCCCCATaGCAACATGAGGTGGCCTCAGTTGAGCAGTATGCT | + |
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Preference number: 6 (lower is better) Translates to: PGKRPLVCWGAP*QHEVASVEQYA Trigger: AGCATACTGCTCAACTGAGGCCACCTCATGTTGGCATGGGGCACCCCAACAGACAAGTGGTCTCTTCCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS CAA 72 bp | TGGTCGGTGGGCAGGACACACCTGAAGGAGCATATCTaGGCTGTGTGGGTTGGGCAGACATCCCACAATGCT | + |
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Preference number: 6 (lower is better) Translates to: WSVGRTHLKEHI*AVWVGQTSHNA Trigger: AGCATTGTGGGATGTCTGCCCAACCCACACAGCCAAGATATGCTCCTTCAGGTGTGTCCTGCCCACCGACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS GCA 72 bp | AACACAGCTAGACCAGCCAGGATGACAGGTGTTACCTaGCTGGAACAGATGCCCTTCCCAAGGAAGGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: NTARPARMTGVT*LEQMPFPRKGR Trigger: TCTCCCCTTCCTTGGGAAGGGCATCTGTTCCAGGCAGGTAACACCTGTCATCCTGGCTGGTCTAGCTGTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS GCA 72 bp | TTATGTCAGCTCTTCCTTGAGGGAATGAAGGCAGACTaGTGGGCTGAACACAAAAAGGGGAGCAGCCCGGGG | + |
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Preference number: 6 (lower is better) Translates to: LCQLFLEGMKAD*WAEHKKGSSPG Trigger: CCCCGGGCTGCTCCCCTTTTTGTGTTCAGCCCAGCAGTCTGCCTTCATTCCCTCAAGGAAGAGCTGACATAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS GCA 72 bp | GTGTTACCTAGACCAGCCAGGATGACAGGTGTTACCTaGCTGGAACAGATGCCCTTCCCAAGGAAGGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: VLPRPARMTGVT*LEQMPFPRKGR Trigger: TCTCCCCTTCCTTGGGAAGGGCATCTGTTCCAGGCAGGTAACACCTGTCATCCTGGCTGGTCTAGGTAACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS TCA 72 bp | AGCCATGACATTGGGTGTTACCTAGACCAGCCAGGATaGCAGGTGTTACCTGCCTGGAACAGATGCCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SHDIGCYLDQPG*QVLPAWNRCPS Trigger: GGAAGGGCATCTGTTCCAGGCAGGTAACACCTGTCATCCTGGCTGGTCTAGGTAACACCCAATGTCATGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS GCA 72 bp | AGGCCGAGTCACAGGGAGGACAACCTACATTTACTGTaGCACTGTCGCATCAGCTGTGGACACTTTAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: RPSHREDNLHLL*HCRISCGHFRS Trigger: ACTTCTAAAGTGTCCACAGCTGATGCGACAGTGGCACAGTAAATGTAGGTTGTCCTCCCTGTGACTCGGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS TCA 72 bp | AACATGGACTTTATCTGGAAGGCAAGGGGGAGTCACTaGAGAGTCTTACACAGAGCGGCGATGCTCATGTTT | + |
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Preference number: 6 (lower is better) Translates to: NMDFIWKARGSH*RVLHRAAMLMF Trigger: AAACATGAGCATCGCCGCTCTGTGTAAGACTCTTCAGTGACTCCCCCTTGCCTTCCAGATAAAGTCCATGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS GCA 72 bp | GGGGGAGTCACTGAAGAGTCTTACACAGAGCGGCGATaGTCATGTTTACATTTGGCAGAGATCTTTACTCCA | + |
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Preference number: 6 (lower is better) Translates to: GGVTEESYTERR*SCLHLAEIFTP Trigger: TGGAGTAAAGATCTCTGCCAAATGTAAACATGAGCATCGCCGCTCTGTGTAAGACTCTTCAGTGACTCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CCA 72 bp | AATGTAGCACACAGTGTGGTATTGACACAGAGTAAATaGGTAGTCGTAACATGGGGCTCTGAGAGGGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: NVAHSVVLTQSK*VVVTWGSERGR Trigger: CCTTCCCCTCTCAGAGCCCCATGTTACGACTACCCATTTACTCTGTGTCAATACCACACTGTGTGCTACATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CAA 90 bp | CAAGATACATATGGCCCCTGTTCTAATGTAGCACACAGTGTGGTATaGACACAGAGTAAATGGGTAGTCGTAACATGGGGCTCTGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: QDTYGPCSNVAHSVV*TQSKWVVVTWGSER Trigger: CCTCTCAGAGCCCCATGTTACGACTACCCATTTACTCTGTGTCAATACCACACTGTGTGCTACATTAGAACAGGGGCCATATGTATCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CAA 72 bp | TATGGCCCCTGTTCTAATGTAGCACACAGTGTGGTATaGACACAGAGTAAATGGGTAGTCGTAACATGGGGC | + |
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Preference number: 6 (lower is better) Translates to: YGPCSNVAHSVV*TQSKWVVVTWG Trigger: GCCCCATGTTACGACTACCCATTTACTCTGTGTCAATACCACACTGTGTGCTACATTAGAACAGGGGCCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CAA 90 bp | TCACATGGGCTTCCCTCTGTTCGTGTCTGTGTCCTTATCTCCTTTTaGTATAAAGACGTCAGGCATATTGAATTAAGGGCCCCCACACAT | + |
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Preference number: 6 (lower is better) Translates to: SHGLPSVRVCVLISF*YKDVRHIELRAPTH Trigger: ATGTGTGGGGGCCCTTAATTCAATATGCCTGACGTCTTTATACAAAAAGGAGATAAGGACACAGACACGAACAGAGGGAAGCCCATGTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CCA 72 bp | GAGATGCTAGGGCTGCCAGAGCAAAGTATCACCGACTaGGTGGTTAAAACAACAGAAATGTATGTTCTCATC | + |
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Preference number: 6 (lower is better) Translates to: EMLGLPEQSITD*VVKTTEMYVLI Trigger: GATGAGAACATACATTTCTGTTGTTTTAACCACCCAGTCGGTGATACTTTGCTCTGGCAGCCCTAGCATCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CCA 72 bp | GTCAGAACCAGTTATTTGCATGGGATCATTGTGATGTaGTTTGAGGGGACACTGTGGCAGAGTCTTAGTATG | + |
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Preference number: 6 (lower is better) Translates to: VRTSYLHGIIVM*FEGTLWQSLSM Trigger: CATACTAAGACTCTGCCACAGTGTCCCCTCAAACCACATCACAATGATCCCATGCAAATAACTGGTTCTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS CCA 72 bp | GTGCTAGCTGATGAGGATACTTTAATCTTTGTAAGATaGATAGAGCACTTTCTCTGTGCCAGGCCCCATGCT | + |
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Preference number: 6 (lower is better) Translates to: VLADEDTLIFVR*IEHFLCARPHA Trigger: AGCATGGGGCCTGGCACAGAGAAAGTGCTCTATCCATCTTACAAAGATTAAAGTATCCTCATCAGCTAGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS TCA 72 bp | ATGAAGACTGCTGCAGTTCTAGGTACTCCAGACAGATaGCAATGTCCAGAGACAGAAAGAAAGTCTCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: MKTAAVLGTPDR*QCPETERKSLS Trigger: TGAGAGAGACTTTCTTTCTGTCTCTGGACATTGTCATCTGTCTGGAGTACCTAGAACTGCAGCAGTCTTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000518418.1 ENST00000658947.1 |
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| CDS GCA 72 bp | ATGAATTTTATGGGACACAATTCAGCCTGTAATGGATaGATAGTCACTGGATCAAGCAAGGCCTTGGAACCA | + |
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Preference number: 6 (lower is better) Translates to: MNFMGHNSACNG*IVTGSSKALEP Trigger: TGGTTCCAAGGCCTTGCTTGATCCAGTGACTATGCATCCATTACAGGCTGAATTGTGTCCCATAAAATTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS GCA 72 bp | AAGATGGATAGAGCACTTTCTCTGTGCCAGGCCCCATaGTTAATGTCTTATGTACATTTTCTCCTTGGATAC | + |
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Preference number: 6 (lower is better) Translates to: KMDRALSLCQAP*LMSYVHFLLGY Trigger: GTATCCAAGGAGAAAATGTACATAAGACATTAAGCATGGGGCCTGGCACAGAGAAAGTGCTCTATCCATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS CAA 72 bp | CTTCCCTCTGTTCGTGTCTGTGTCCTTATCTCCTTTTaGTATAAAGACGTCAGGCATATTGAATTAAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: LPSVRVCVLISF*YKDVRHIELRA Trigger: GGCCCTTAATTCAATATGCCTGACGTCTTTATACAAAAAGGAGATAAGGACACAGACACGAACAGAGGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS TCA 72 bp | CTGCCACTTTATCTAAAACACAAAAGCTTACTCTCATaGTTCTATGAAGACTGCTGCAGTTCTAGGTACTCC | + |
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Preference number: 6 (lower is better) Translates to: LPLYLKHKSLLS*FYEDCCSSRYS Trigger: GGAGTACCTAGAACTGCAGCAGTCTTCATAGAATCATGAGAGTAAGCTTTTGTGTTTTAGATAAAGTGGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000518418.1 ENST00000658947.1 |
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| CDS CCA 72 bp | GACTCTATCTACAAATACAGTCATGTTCTGAATTACTaGAGGCTGGGGCTTCAATGTATGAATTTTATGGGA | + |
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Preference number: 6 (lower is better) Translates to: DSIYKYSHVLNY*RLGLQCMNFMG Trigger: TCCCATAAAATTCATACATTGAAGCCCCAGCCTCCAGTAATTCAGAACATGACTGTATTTGTAGATAGAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS CAA 72 bp | TCTCAAATATGTTGTATGTGCACGAAGCCTTCCTATTaGCCTATGCTTAAGCTCTTGAAGCTCAAGGTTAAT | + |
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Preference number: 6 (lower is better) Translates to: SQICCMCTKPSY*PMLKLLKLKVN Trigger: ATTAACCTTGAGCTTCAAGAGCTTAAGCATAGGCAAATAGGAAGGCTTCGTGCACATACAACATATTTGAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS TCA 72 bp | ATTTCAAAACCACTTCCTAAATCTGACTTAGCCACTTaGTTTCATGGGGTGCCCTGTCAAATAATTGTGAAA | + |
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Preference number: 6 (lower is better) Translates to: ISKPLPKSDLAT*FHGVPCQIIVK Trigger: TTTCACAATTATTTGACAGGGCACCCCATGAAATCAAGTGGCTAAGTCAGATTTAGGAAGTGGTTTTGAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS TCA 72 bp | ATTTTCATTAATTGCCAGTCATCCAAAAGAATTTATTaGGCACTTGTAGGTACCAGACACTGTTCTAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: IFINCQSSKRIY*ALVGTRHCSRH Trigger: GTGCCTAGAACAGTGTCTGGTACCTACAAGTGCTCAATAAATTCTTTTGGATGACTGGCAATTAATGAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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| CDS GCA 72 bp | TTTAATCTTTGTAAGATGGATAGAGCACTTTCTCTGTaGCAGGCCCCATGCTTAATGTCTTATGTACATTTT | + |
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Preference number: 6 (lower is better) Translates to: FNLCKMDRALSL*QAPCLMSYVHF Trigger: AAAATGTACATAAGACATTAAGCATGGGGCCTGGCACAGAGAAAGTGCTCTATCCATCTTACAAAGATTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658947.1 |
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| CDS TCA 72 bp | TCTTCAGGAAGATTGGATTTTATGCCTCAAAATGAATaGATTCAGCAAAGAATTTCTGAGCTCTTCTTACGT | + |
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Preference number: 6 (lower is better) Translates to: SSGRLDFMPQNE*IQQRISELFLR Trigger: ACGTAAGAAGAGCTCAGAAATTCTTTGCTGAATTCATTCATTTTGAGGCATAAAATCCAATCTTCCTGAAGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518418.1 |
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