Pregenerated sensors for LINC01843 (Homo sapiens)

Ensembl gene IDs: ENSG00000251169

Ensembl transcript IDs: ENST00000515627.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ACACACAGAGGGGGAGCCCGAGCAGGTGATGGGGCTCGAAGGCAGTaGGAGACCAGCTGGAGGGATGAGAGAAGGGCACACTGGGCAGCA	+
Preference number: 5 (lower is better) Translates to: THRGGARAGDGARRQ*ETSWRDERRAHWAA Trigger: TGCTGCCCAGTGTGCCCTTCTCTCATCCCTCCAGCTGGTCTCTCACTGCCTTCGAGCCCCATCACCTGCTCGGGCTCCCCCTCTGTGTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS GCA 90 bp	GACGCCCCAAGGAGAGACTCTGCCGCGAGTCGCTGGGCCAGTACTTaGTGCCAAGAGCCTGACAGCCTGTTGCTTGGTGACATCTCACTC	+
Preference number: 5 (lower is better) Translates to: DAPRRDSAASRWAST*CQEPDSLLLGDISL Trigger: GAGTGAGATGTCACCAAGCAACAGGCTGTCAGGCTCTTGGCAGCAAGTACTGGCCCAGCGACTCGCGGCAGAGTCTCTCCTTGGGGCGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS GCA 90 bp	GCCCCAAGGAGAGACTCTGCCGCGAGTCGCTGGGCCAGTACTTGCTaGCAAGAGCCTGACAGCCTGTTGCTTGGTGACATCTCACTCAAG	+
Preference number: 5 (lower is better) Translates to: APRRDSAASRWASTC*QEPDSLLLGDISLK Trigger: CTTGAGTGAGATGTCACCAAGCAACAGGCTGTCAGGCTCTTGGCAGCAAGTACTGGCCCAGCGACTCGCGGCAGAGTCTCTCCTTGGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS GCA 90 bp	AGGAGCAGCCTGGCTGGGTCAGGTTCCTGGGCTGCTGTAACAAAGTaGCACAGGCAGGGTGGCTTACAGCAGCAGACACTTATTCCCGCT	+
Preference number: 5 (lower is better) Translates to: RSSLAGSGSWAAVTK*HRQGGLQQQTLIPA Trigger: AGCGGGAATAAGTGTCTGCTGCTGTAAGCCACCCTGCCTGTGGCACTTTGTTACAGCAGCCCAGGAACCTGACCCAGCCAGGCTGCTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS CCA 90 bp	GTCTTCCCTATAGTGTCTTGCTCTGTGGTCCAGGCTCAACTCCGCTaGCATGACCATGGCTTACTGCAGCTTCGACCTTCTGGGCTCAAG	+
Preference number: 5 (lower is better) Translates to: VFPIVSCSVVQAQLR*HDHGLLQLRPSGLK Trigger: CTTGAGCCCAGAAGGTCGAAGCTGCAGTAAGCCATGGTCATGCCAGCGGAGTTGAGCCTGGACCACAGAGCAAGACACTATAGGGAAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS GCA 90 bp	CAGCCCCCGGCATTCCTTGCCTTTCGGATGCATAACTCTGGTCTCTaGCTTCATTTTCACCTGGCTGTCTTCCCTATAGTGTCTTGCTCT	+
Preference number: 5 (lower is better) Translates to: QPPAFLAFRMHNSGL*LHFHLAVFPIVSCS Trigger: AGAGCAAGACACTATAGGGAAGACAGCCAGGTGAAAATGAAGGCAGAGACCAGAGTTATGCATCCGAAAGGCAAGGAATGCCGGGGGCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS TCA 72 bp	GGGGGAGCCCGAGCAGGTGATGGGGCTCGAAGGCAGTaGGAGACCAGCTGGAGGGATGAGAGAAGGGCACAC	+
Preference number: 6 (lower is better) Translates to: GGARAGDGARRQ*ETSWRDERRAH Trigger: GTGTGCCCTTCTCTCATCCCTCCAGCTGGTCTCTCACTGCCTTCGAGCCCCATCACCTGCTCGGGCTCCCCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS GCA 72 bp	ACCCCTGATAAGGACAGACGCCCCAAGGAGAGACTCTaGCGCGAGTCGCTGGGCCAGTACTTGCTGCCAAGA	+
Preference number: 6 (lower is better) Translates to: TPDKDRRPKERL*RESLGQYLLPR Trigger: TCTTGGCAGCAAGTACTGGCCCAGCGACTCGCGGCAGAGTCTCTCCTTGGGGCGTCTGTCCTTATCAGGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS GCA 72 bp	CAGCAGGAGCAGCCTGGCTGGGTCAGGTTCCTGGGCTaGTGTAACAAAGTGCCACAGGCAGGGTGGCTTACA	+
Preference number: 6 (lower is better) Translates to: QQEQPGWVRFLG*CNKVPQAGWLT Trigger: TGTAAGCCACCCTGCCTGTGGCACTTTGTTACAGCAGCCCAGGAACCTGACCCAGCCAGGCTGCTCCTGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS TCA 72 bp	GTCTTGCTCTGTGGTCCAGGCTCAACTCCGCTGGCATaGCCATGGCTTACTGCAGCTTCGACCTTCTGGGCT	+
Preference number: 6 (lower is better) Translates to: VLLCGPGSTPLA*PWLTAASTFWA Trigger: AGCCCAGAAGGTCGAAGCTGCAGTAAGCCATGGTCATGCCAGCGGAGTTGAGCCTGGACCACAGAGCAAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS GCA 72 bp	CTGGCTGGGTCAGGTTCCTGGGCTGCTGTAACAAAGTaGCACAGGCAGGGTGGCTTACAGCAGCAGACACTT	+
Preference number: 6 (lower is better) Translates to: LAGSGSWAAVTK*HRQGGLQQQTL Trigger: AAGTGTCTGCTGCTGTAAGCCACCCTGCCTGTGGCACTTTGTTACAGCAGCCCAGGAACCTGACCCAGCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS CCA 72 bp	ATAGTGTCTTGCTCTGTGGTCCAGGCTCAACTCCGCTaGCATGACCATGGCTTACTGCAGCTTCGACCTTCT	+
Preference number: 6 (lower is better) Translates to: IVSCSVVQAQLR*HDHGLLQLRPS Trigger: AGAAGGTCGAAGCTGCAGTAAGCCATGGTCATGCCAGCGGAGTTGAGCCTGGACCACAGAGCAAGACACTAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS CCA 72 bp	CCTGAAGGAGCCTTCAGTCTAGCCAGGGAGATAGGCTaGCCAGCAAAACTTACAGGTCTGCTGAATAAGTGT	+
Preference number: 6 (lower is better) Translates to: PEGAFSLAREIG*PAKLTGLLNKC Trigger: ACACTTATTCAGCAGACCTGTAAGTTTTGCTGGCCAGCCTATCTCCCTGGCTAGACTGAAGGCTCCTTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS CAA 72 bp	CCAGTACTTGCTGCCAAGAGCCTGACAGCCTGTTGCTaGGTGACATCTCACTCAAGTCCTTCAGGAAACTTG	+
Preference number: 6 (lower is better) Translates to: PVLAAKSLTACC*VTSHSSPSGNL Trigger: CAAGTTTCCTGAAGGACTTGAGTGAGATGTCACCAAGCAACAGGCTGTCAGGCTCTTGGCAGCAAGTACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515627.2
CDS TCA 72 bp	TTATTCCCGCTGTTCCGGAAAATAGACATCCCAAATTaGGGTGCTGCTAAAGCCATGCTCCCTCCAAGGCCT	+
Preference number: 6 (lower is better) Translates to: LFPLFRKIDIPN*GAAKAMLPPRP Trigger: AGGCCTTGGAGGGAGCATGGCTTTAGCAGCACCTCAATTTGGGATGTCTATTTTCCGGAACAGCGGGAATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515627.2