Pregenerated sensors for LINC01842 (Homo sapiens)

Ensembl gene IDs: ENSG00000267147

Ensembl transcript IDs: ENST00000588275.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GCTGCTTGGCAGGGTGCCAGGGTTCTTGTACTTTCCTCCTGTGGATaGTCCAGGCCCAGGGGCCTGGCTGGCTCATGTTGTCCAGGCTGT	+
Preference number: 5 (lower is better) Translates to: AAWQGARVLVLSSCG*SRPRGLAGSCCPGC Trigger: ACAGCCTGGACAACATGAGCCAGCCAGGCCCCTGGGCCTGGAGCATCCACAGGAGGAAAGTACAAGAACCCTGGCACCCTGCCAAGCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS GCA 90 bp	AAACCAGCCCTTGGGTGTCTGAAGAATCCCTGCTGCTTGGCAGGGTaGCAGGGTTCTTGTACTTTCCTCCTGTGGATGCTCCAGGCCCAG	+
Preference number: 5 (lower is better) Translates to: KPALGCLKNPCCLAG*QGSCTFLLWMLQAQ Trigger: CTGGGCCTGGAGCATCCACAGGAGGAAAGTACAAGAACCCTGGCACCCTGCCAAGCAGCAGGGATTCTTCAGACACCCAAGGGCTGGTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS GCA 90 bp	GTCCTTCCCAGCAAACCAGCCCTTGGGTGTCTGAAGAATCCCTGCTaGTTGGCAGGGTGCCAGGGTTCTTGTACTTTCCTCCTGTGGATG	+
Preference number: 5 (lower is better) Translates to: VLPSKPALGCLKNPC*LAGCQGSCTFLLWM Trigger: CATCCACAGGAGGAAAGTACAAGAACCCTGGCACCCTGCCAAGCAGCAGGGATTCTTCAGACACCCAAGGGCTGGTTTGCTGGGAAGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS TCA 90 bp	TTCTGGTCACATGAGTCCTTCCCAGCAAACCAGCCCTTGGGTGTCTaGAGAATCCCTGCTGCTTGGCAGGGTGCCAGGGTTCTTGTACTT	+
Preference number: 5 (lower is better) Translates to: FWSHESFPANQPLGV*RIPAAWQGARVLVL Trigger: AAGTACAAGAACCCTGGCACCCTGCCAAGCAGCAGGGATTCTTCAGACACCCAAGGGCTGGTTTGCTGGGAAGGACTCATGTGACCAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS GCA 90 bp	TGGCAACCATTCTTAAAGCTCTCCAGGACTGTTGGTGCTCAGCAGTaGCTCAGTTTCCCCTTCTGGTCACATGAGTCCTTCCCAGCAAAC	+
Preference number: 5 (lower is better) Translates to: WQPFLKLSRTVGAQQ*LSFPFWSHESFPAN Trigger: GTTTGCTGGGAAGGACTCATGTGACCAGAAGGGGAAACTGAGGCACTGCTGAGCACCAACAGTCCTGGAGAGCTTTAAGAATGGTTGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS CCA 90 bp	CATCTGGATGTATATGCAGGTCACAGGGGATATGATGGCTTAGCTTaGGCTCAGAGGCCTGACAGCCTCGAACTCCTGACCTCAAGTGAT	+
Preference number: 5 (lower is better) Translates to: HLDVYAGHRGYDGLA*AQRPDSLELLTSSD Trigger: ATCACTTGAGGTCAGGAGTTCGAGGCTGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGACCTGCATATACATCCAGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS CCA 90 bp	GGATGTCATCAGTTAAGGAGGAACTGGCTATTTTCACTTCTTTTGTaGATCTTCAGTTGCTTCAGGCCATCTGGATGTATATGCAGGTCA	+
Preference number: 5 (lower is better) Translates to: GCHQLRRNWLFSLLL*IFSCFRPSGCICRS Trigger: TGACCTGCATATACATCCAGATGGCCTGAAGCAACTGAAGATCCACAAAAGAAGTGAAAATAGCCAGTTCCTCCTTAACTGATGACATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS GCA 72 bp	GGGCTCAAGCGATCCTCCTGTCTTGCCATCCCAAAGTaGTGGGTTTGCAGGCCTGAGCAACTGCGCCTGGCA	+
Preference number: 6 (lower is better) Translates to: GLKRSSCLAIPK*WVCRPEQLRLA Trigger: TGCCAGGCGCAGTTGCTCAGGCCTGCAAACCCAGCACTTTGGGATGGCAAGACAGGAGGATCGCTTGAGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS GCA 72 bp	CAGGGTGCCAGGGTTCTTGTACTTTCCTCCTGTGGATaGTCCAGGCCCAGGGGCCTGGCTGGCTCATGTTGT	+
Preference number: 6 (lower is better) Translates to: QGARVLVLSSCG*SRPRGLAGSCC Trigger: ACAACATGAGCCAGCCAGGCCCCTGGGCCTGGAGCATCCACAGGAGGAAAGTACAAGAACCCTGGCACCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS TCA 72 bp	CATGAGTCCTTCCCAGCAAACCAGCCCTTGGGTGTCTaGAGAATCCCTGCTGCTTGGCAGGGTGCCAGGGTT	+
Preference number: 6 (lower is better) Translates to: HESFPANQPLGV*RIPAAWQGARV Trigger: AACCCTGGCACCCTGCCAAGCAGCAGGGATTCTTCAGACACCCAAGGGCTGGTTTGCTGGGAAGGACTCATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS CAA 90 bp	CTTCCCAGCAAACCAGCCCTTGGGTGTCTGAAGAATCCCTGCTGCTaGGCAGGGTGCCAGGGTTCTTGTACTTTCCTCCTGTGGATGCTC	+
Preference number: 6 (lower is better) Translates to: LPSKPALGCLKNPCC*AGCQGSCTFLLWML Trigger: GAGCATCCACAGGAGGAAAGTACAAGAACCCTGGCACCCTGCCAAGCAGCAGGGATTCTTCAGACACCCAAGGGCTGGTTTGCTGGGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS GCA 72 bp	AGCAAACCAGCCCTTGGGTGTCTGAAGAATCCCTGCTaGTTGGCAGGGTGCCAGGGTTCTTGTACTTTCCTC	+
Preference number: 6 (lower is better) Translates to: SKPALGCLKNPC*LAGCQGSCTFL Trigger: GAGGAAAGTACAAGAACCCTGGCACCCTGCCAAGCAGCAGGGATTCTTCAGACACCCAAGGGCTGGTTTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS CAA 72 bp	AAACCAGCCCTTGGGTGTCTGAAGAATCCCTGCTGCTaGGCAGGGTGCCAGGGTTCTTGTACTTTCCTCCTG	+
Preference number: 6 (lower is better) Translates to: KPALGCLKNPCC*AGCQGSCTFLL Trigger: CAGGAGGAAAGTACAAGAACCCTGGCACCCTGCCAAGCAGCAGGGATTCTTCAGACACCCAAGGGCTGGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS GCA 72 bp	TTCTTAAAGCTCTCCAGGACTGTTGGTGCTCAGCAGTaGCTCAGTTTCCCCTTCTGGTCACATGAGTCCTTC	+
Preference number: 6 (lower is better) Translates to: FLKLSRTVGAQQ*LSFPFWSHESF Trigger: GAAGGACTCATGTGACCAGAAGGGGAAACTGAGGCACTGCTGAGCACCAACAGTCCTGGAGAGCTTTAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS CCA 72 bp	ACTTCTTTTGTGGATCTTCAGTTGCTTCAGGCCATCTaGATGTATATGCAGGTCACAGGGGATATGATGGCT	+
Preference number: 6 (lower is better) Translates to: TSFVDLQLLQAI*MYMQVTGDMMA Trigger: AGCCATCATATCCCCTGTGACCTGCATATACATCCAGATGGCCTGAAGCAACTGAAGATCCACAAAAGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS CAA 72 bp	GGGTATATTGTCACAAAGTCAGTTGAACAGTTAGGGTaGGGCAGGAACAAATCACGATGGTGGGATGTCATC	+
Preference number: 6 (lower is better) Translates to: GYIVTKSVEQLG*GRNKSRWWDVI Trigger: GATGACATCCCACCATCGTGATTTGTTCCTGCCCAACCCTAACTGTTCAACTGACTTTGTGACAATATACCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS GCA 72 bp	AACTGGCTATTTTCACTTCTTTTGTGGATCTTCAGTTaGTTCAGGCCATCTGGATGTATATGCAGGTCACAG	+
Preference number: 6 (lower is better) Translates to: NWLFSLLLWIFS*FRPSGCICRSQ Trigger: CTGTGACCTGCATATACATCCAGATGGCCTGAAGCAACTGAAGATCCACAAAAGAAGTGAAAATAGCCAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000588275.2
CDS CAA 72 bp	CATCAGTTAAGGAGGAACTGGCTATTTTCACTTCTTTaGTGGATCTTCAGTTGCTTCAGGCCATCTGGATGT	+
Preference number: 6 (lower is better) Translates to: HQLRRNWLFSLL*WIFSCFRPSGC Trigger: ACATCCAGATGGCCTGAAGCAACTGAAGATCCACAAAAGAAGTGAAAATAGCCAGTTCCTCCTTAACTGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588275.2

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