Pregenerated sensors for LINC01839 (Homo sapiens)
Ensembl gene IDs: ENSG00000227509Ensembl transcript IDs: ENST00000451348.1, ENST00000629443.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGGTCACCGGGTTTGGGATTCTTCCTGTGGAGCGTGGAGCGGCTGTaGTCCACCAAGGCAACTAGCGGTGCACGGAGCTGGGCAGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: RSPGLGFFLWSVERL*STKATSGARSWAGW Trigger: CCACCCTGCCCAGCTCCGTGCACCGCTAGTTGCCTTGGTGGATCACAGCCGCTCCACGCTCCACAGGAAGAATCCCAAACCCGGTGACCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CCA 90 bp | GCTGGGGCAGCCGGTCACCGGGTTTGGGATTCTTCCTGTGGAGCGTaGAGCGGCTGTGATCCACCAAGGCAACTAGCGGTGCACGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: AGAAGHRVWDSSCGA*SGCDPPRQLAVHGA Trigger: AGCTCCGTGCACCGCTAGTTGCCTTGGTGGATCACAGCCGCTCCACGCTCCACAGGAAGAATCCCAAACCCGGTGACCGGCTGCCCCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS TCA 90 bp | CTAGCGGTGCACGGAGCTGGGCAGGGTGGCCAAGGCCTTGGCCGTTaGTGTAGGTGTTCGAGGCACGGATGGCCTGTTGATCTATGTGCA | + |
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Preference number: 5 (lower is better) Translates to: LAVHGAGQGGQGLGR*CRCSRHGWPVDLCA Trigger: TGCACATAGATCAACAGGCCATCCGTGCCTCGAACACCTACATCAACGGCCAAGGCCTTGGCCACCCTGCCCAGCTCCGTGCACCGCTAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS GCA 90 bp | GGGCTGGTCAGCTCCTGGTATGGCTTCAGGACCTGTCCACAAGTCTaGCACCTCACTGTGTGGAGGTGGCTTCAGACCTCTCTGGAAAGT | + |
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Preference number: 5 (lower is better) Translates to: GLVSSWYGFRTCPQV*HLTVWRWLQTSLES Trigger: ACTTTCCAGAGAGGTCTGAAGCCACCTCCACACAGTGAGGTGGCAGACTTGTGGACAGGTCCTGAAGCCATACCAGGAGCTGACCAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CCA 90 bp | ACCCACAGTTTGGCTTTCTATCCCTGCAGCCATGTCCTCATTTTCTaGGGCTGGTCAGCTCCTGGTATGGCTTCAGGACCTGTCCACAAG | + |
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Preference number: 5 (lower is better) Translates to: THSLAFYPCSHVLIF*GWSAPGMASGPVHK Trigger: CTTGTGGACAGGTCCTGAAGCCATACCAGGAGCTGACCAGCCCCAGAAAATGAGGACATGGCTGCAGGGATAGAAAGCCAAACTGTGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CCA 90 bp | CTCACTGTGTGGAGGTGGCTTCAGACCTCTCTGGAAAGTCAAAAATaGAGACGGAGACACTCTTCTGACAGGTTTGGGTGGTCCAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: LTVWRWLQTSLESQK*RRRHSSDRFGWSKG Trigger: TCCTTTGGACCACCCAAACCTGTCAGAAGAGTGTCTCCGTCTCCATTTTTGACTTTCCAGAGAGGTCTGAAGCCACCTCCACACAGTGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CCA 90 bp | CACAAGTCTGCCACCTCACTGTGTGGAGGTGGCTTCAGACCTCTCTaGAAAGTCAAAAATGGAGACGGAGACACTCTTCTGACAGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: HKSATSLCGGGFRPL*KVKNGDGDTLLTGL Trigger: CAAACCTGTCAGAAGAGTGTCTCCGTCTCCATTTTTGACTTTCCAGAGAGGTCTGAAGCCACCTCCACACAGTGAGGTGGCAGACTTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CCA 72 bp | GCCGGTCACCGGGTTTGGGATTCTTCCTGTGGAGCGTaGAGCGGCTGTGATCCACCAAGGCAACTAGCGGTG | + |
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Preference number: 6 (lower is better) Translates to: AGHRVWDSSCGA*SGCDPPRQLAV Trigger: CACCGCTAGTTGCCTTGGTGGATCACAGCCGCTCCACGCTCCACAGGAAGAATCCCAAACCCGGTGACCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS TCA 72 bp | GGTTTGGGATTCTTCCTGTGGAGCGTGGAGCGGCTGTaGTCCACCAAGGCAACTAGCGGTGCACGGAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: GLGFFLWSVERL*STKATSGARSW Trigger: CCAGCTCCGTGCACCGCTAGTTGCCTTGGTGGATCACAGCCGCTCCACGCTCCACAGGAAGAATCCCAAACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS TCA 72 bp | TCCTCTCCACCTTCTGCTGGCACCGTCTGCAGCCTCTaGCAGCATAGATACTCTTCCTGGGGTGGGGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SSPPSAGTVCSL*QHRYSSWGGGL Trigger: CAAGCCCCCACCCCAGGAAGAGTATCTATGCTGTCAGAGGCTGCAGACGGTGCCAGCAGAAGGTGGAGAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CAA 90 bp | ACGGATGGCCTGTTGATCTATGTGCAGCTGCTGCGGCTGTGTGTGTaGATGCGTCCCACCCACCAAAGGCCCCAAGCTTCCTCTCCACCT | + |
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Preference number: 6 (lower is better) Translates to: TDGLLIYVQLLRLCV*MRPTHQRPQASSPP Trigger: AGGTGGAGAGGAAGCTTGGGGCCTTTGGTGGGTGGGACGCATCAACACACACAGCCGCAGCAGCTGCACATAGATCAACAGGCCATCCGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CAA 90 bp | AAGGCCTTGGCCGTTGATGTAGGTGTTCGAGGCACGGATGGCCTGTaGATCTATGTGCAGCTGCTGCGGCTGTGTGTGTTGATGCGTCCC | + |
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Preference number: 6 (lower is better) Translates to: KALAVDVGVRGTDGL*IYVQLLRLCVLMRP Trigger: GGGACGCATCAACACACACAGCCGCAGCAGCTGCACATAGATCAACAGGCCATCCGTGCCTCGAACACCTACATCAACGGCCAAGGCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CAA 72 bp | CTGTTGATCTATGTGCAGCTGCTGCGGCTGTGTGTGTaGATGCGTCCCACCCACCAAAGGCCCCAAGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LLIYVQLLRLCV*MRPTHQRPQAS Trigger: GGAAGCTTGGGGCCTTTGGTGGGTGGGACGCATCAACACACACAGCCGCAGCAGCTGCACATAGATCAACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CAA 72 bp | GCCGTTGATGTAGGTGTTCGAGGCACGGATGGCCTGTaGATCTATGTGCAGCTGCTGCGGCTGTGTGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: AVDVGVRGTDGL*IYVQLLRLCVL Trigger: CAACACACACAGCCGCAGCAGCTGCACATAGATCAACAGGCCATCCGTGCCTCGAACACCTACATCAACGGC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CCA 72 bp | TTGGCTTTCTATCCCTGCAGCCATGTCCTCATTTTCTaGGGCTGGTCAGCTCCTGGTATGGCTTCAGGACCT | + |
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Preference number: 6 (lower is better) Translates to: LAFYPCSHVLIF*GWSAPGMASGP Trigger: AGGTCCTGAAGCCATACCAGGAGCTGACCAGCCCCAGAAAATGAGGACATGGCTGCAGGGATAGAAAGCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CAA 90 bp | CATAGACCTTTAAGCGTGCCCCCAGATGGACAGGCTGAAGTCCCCTaGACCCACAGTTTGGCTTTCTATCCCTGCAGCCATGTCCTCATT | + |
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Preference number: 6 (lower is better) Translates to: HRPLSVPPDGQAEVP*THSLAFYPCSHVLI Trigger: AATGAGGACATGGCTGCAGGGATAGAAAGCCAAACTGTGGGTCAAGGGGACTTCAGCCTGTCCATCTGGGGGCACGCTTAAAGGTCTATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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| CDS CCA 72 bp | TGGAGGTGGCTTCAGACCTCTCTGGAAAGTCAAAAATaGAGACGGAGACACTCTTCTGACAGGTTTGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: WRWLQTSLESQK*RRRHSSDRFGW Trigger: CCACCCAAACCTGTCAGAAGAGTGTCTCCGTCTCCATTTTTGACTTTCCAGAGAGGTCTGAAGCCACCTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000451348.1 ENST00000629443.1 |
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