Pregenerated sensors for LINC01838 (Homo sapiens)
Ensembl gene IDs: ENSG00000269037Ensembl transcript IDs: ENST00000595783.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGGCGTGGCGGGGCCGGGGGTGAAGCTTGCAGAGGTAGTTGCCCGTaGAGAGCAGCTTGTGCGCTGTTGGATCCTTGGAGTGGAGTGGGA | + |
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Preference number: 5 (lower is better) Translates to: GRGGAGGEACRGSCP*RAACALLDPWSGVG Trigger: TCCCACTCCACTCCAAGGATCCAACAGCGCACAAGCTGCTCTTCACGGGCAACTACCTCTGCAAGCTTCACCCCCGGCCCCGCCACGCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS TCA 90 bp | CCTGCCTGGACATTGAGGATGGATCCGAGAGAGAAGCGCAGAGCCTaGCGGATCAGACACCACCACCCCTTAGCGGCGACGAAACCGAGC | + |
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Preference number: 5 (lower is better) Translates to: PAWTLRMDPREKRRA*RIRHHHPLAATKPS Trigger: GCTCGGTTTCGTCGCCGCTAAGGGGTGGTGGTGTCTGATCCGTCAGGCTCTGCGCTTCTCTCTCGGATCCATCCTCAATGTCCAGGCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CCA 90 bp | GCGCTGGGGTCGCTATTTATACTCATCCTCCACCTTCGCTATCCCTaGCTGCTGTCTCCTAGGGTCCTCATCTCAGTCTTCCTGCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: ALGSLFILILHLRYP*LLSPRVLISVFLRR Trigger: CCTGCGCAGGAAGACTGAGATGAGGACCCTAGGAGACAGCAGCCAGGGATAGCGAAGGTGGAGGATGAGTATAAATAGCGACCCCAGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS TCA 90 bp | AACAGCAGACAGCACCGGCTTCATGTGAGAGTCCTGCCTGGACATTaGGGATGGATCCGAGAGAGAAGCGCAGAGCCTGACGGATCAGAC | + |
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Preference number: 5 (lower is better) Translates to: NSRQHRLHVRVLPGH*GWIRERSAEPDGSD Trigger: GTCTGATCCGTCAGGCTCTGCGCTTCTCTCTCGGATCCATCCTCAATGTCCAGGCAGGACTCTCACATGAAGCCGGTGCTGTCTGCTGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS TCA 90 bp | GAAGACTCACTCCCACTGCGATGGGTGGGGGTAAGGGAGCTTCTCTaGTCGCGCTGGGGTCGCTATTTATACTCATCCTCCACCTTCGCT | + |
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Preference number: 5 (lower is better) Translates to: EDSLPLRWVGVRELL*SRWGRYLYSSSTFA Trigger: AGCGAAGGTGGAGGATGAGTATAAATAGCGACCCCAGCGCGATCAGAGAAGCTCCCTTACCCCCACCCATCGCAGTGGGAGTGAGTCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS GCA 90 bp | TGGGGTCGCTATTTATACTCATCCTCCACCTTCGCTATCCCTGGCTaGTGTCTCCTAGGGTCCTCATCTCAGTCTTCCTGCGCAGGGATC | + |
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Preference number: 5 (lower is better) Translates to: WGRYLYSSSTFAIPG*CLLGSSSQSSCAGI Trigger: GATCCCTGCGCAGGAAGACTGAGATGAGGACCCTAGGAGACAGCAGCCAGGGATAGCGAAGGTGGAGGATGAGTATAAATAGCGACCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CCA 90 bp | GGTCCTCATCTCAGTCTTCCTGCGCAGGGATCTAGGCAGTATGGATaGGACCGACCTCACAGAGGAGACTGCCTACCTCAGATAGCAATA | + |
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Preference number: 5 (lower is better) Translates to: GPHLSLPAQGSRQYG*DRPHRGDCLPQIAI Trigger: TATTGCTATCTGAGGTAGGCAGTCTCCTCTGTGAGGTCGGTCCCATCCATACTGCCTAGATCCCTGCGCAGGAAGACTGAGATGAGGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CCA 90 bp | GACTGCCTACCTCAGATAGCAATAGAGGAGAGTCGGTTTGGGCCCTaGATGACAGATCGTAACTGTCCTGAGTGGCTGGACATCTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: DCLPQIAIEESRFGP*MTDRNCPEWLDILE Trigger: CTCTAAGATGTCCAGCCACTCAGGACAGTTACGATCTGTCATCCAGGGCCCAAACCGACTCTCCTCTATTGCTATCTGAGGTAGGCAGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CCA 90 bp | ATACAATATCTCTTCACTTTCTCATCTAAGGCGTCTTCTGGGGGTTaGAGTGGAGGTTTCCCTTCAATGGCCCGGGTAGGATTTCGTTGT | + |
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Preference number: 5 (lower is better) Translates to: IQYLFTFSSKASSGG*SGGFPSMARVGFRC Trigger: ACAACGAAATCCTACCCGGGCCATTGAAGGGAAACCTCCACTCCAACCCCCAGAAGACGCCTTAGATGAGAAAGTGAAGAGATATTGTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS TCA 72 bp | ACATTGAGGATGGATCCGAGAGAGAAGCGCAGAGCCTaGCGGATCAGACACCACCACCCCTTAGCGGCGACG | + |
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Preference number: 6 (lower is better) Translates to: TLRMDPREKRRA*RIRHHHPLAAT Trigger: CGTCGCCGCTAAGGGGTGGTGGTGTCTGATCCGTCAGGCTCTGCGCTTCTCTCTCGGATCCATCCTCAATGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS TCA 72 bp | CAGCACCGGCTTCATGTGAGAGTCCTGCCTGGACATTaGGGATGGATCCGAGAGAGAAGCGCAGAGCCTGAC | + |
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Preference number: 6 (lower is better) Translates to: QHRLHVRVLPGH*GWIRERSAEPD Trigger: GTCAGGCTCTGCGCTTCTCTCTCGGATCCATCCTCAATGTCCAGGCAGGACTCTCACATGAAGCCGGTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS TCA 72 bp | CTCCCACTGCGATGGGTGGGGGTAAGGGAGCTTCTCTaGTCGCGCTGGGGTCGCTATTTATACTCATCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LPLRWVGVRELL*SRWGRYLYSSS Trigger: GGAGGATGAGTATAAATAGCGACCCCAGCGCGATCAGAGAAGCTCCCTTACCCCCACCCATCGCAGTGGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CCA 72 bp | CTCAGTCTTCCTGCGCAGGGATCTAGGCAGTATGGATaGGACCGACCTCACAGAGGAGACTGCCTACCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LSLPAQGSRQYG*DRPHRGDCLPQ Trigger: CTGAGGTAGGCAGTCTCCTCTGTGAGGTCGGTCCCATCCATACTGCCTAGATCCCTGCGCAGGAAGACTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CCA 72 bp | CAGCAGACAGCACCGGCTTCATGTGAGAGTCCTGCCTaGACATTGAGGATGGATCCGAGAGAGAAGCGCAGA | + |
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Preference number: 6 (lower is better) Translates to: QQTAPASCESPA*TLRMDPREKRR Trigger: TCTGCGCTTCTCTCTCGGATCCATCCTCAATGTCCAGGCAGGACTCTCACATGAAGCCGGTGCTGTCTGCTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CCA 72 bp | CCTCAGATAGCAATAGAGGAGAGTCGGTTTGGGCCCTaGATGACAGATCGTAACTGTCCTGAGTGGCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: PQIAIEESRFGP*MTDRNCPEWLD Trigger: GTCCAGCCACTCAGGACAGTTACGATCTGTCATCCAGGGCCCAAACCGACTCTCCTCTATTGCTATCTGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS GCA 72 bp | TATTTATACTCATCCTCCACCTTCGCTATCCCTGGCTaGTGTCTCCTAGGGTCCTCATCTCAGTCTTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: YLYSSSTFAIPG*CLLGSSSQSSC Trigger: GCAGGAAGACTGAGATGAGGACCCTAGGAGACAGCAGCCAGGGATAGCGAAGGTGGAGGATGAGTATAAATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CCA 72 bp | TCGCTATTTATACTCATCCTCCACCTTCGCTATCCCTaGCTGCTGTCTCCTAGGGTCCTCATCTCAGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SLFILILHLRYP*LLSPRVLISVF Trigger: GAAGACTGAGATGAGGACCCTAGGAGACAGCAGCCAGGGATAGCGAAGGTGGAGGATGAGTATAAATAGCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CCA 72 bp | GGCATTGAAGAGAGTGGTTTCCTGTTGATGCCTGTCTaGAACCCTAGATTTCAGGTGATAGGTGTTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: GIEESGFLLMPV*NPRFQVIGVSW Trigger: CCAAGAAACACCTATCACCTGAAATCTAGGGTTCCAGACAGGCATCAACAGGAAACCACTCTCTTCAATGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CAA 90 bp | AAGGGATTGGTATCCATGCAGTTTATACCAAAGTACAAAGTAGGCTaGAGGTTGAGTCTGCAGATTACTGGCTGTGATAGTGAAAATGCT | + |
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Preference number: 6 (lower is better) Translates to: KGLVSMQFIPKYKVG*RLSLQITGCDSENA Trigger: AGCATTTTCACTATCACAGCCAGTAATCTGCAGACTCAACCTCAAGCCTACTTTGTACTTTGGTATAAACTGCATGGATACCAATCCCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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| CDS CAA 72 bp | ATGGGAGACCAGGAGATGAAAACCTGTGAAAAGGGATaGGTATCCATGCAGTTTATACCAAAGTACAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: MGDQEMKTCEKG*VSMQFIPKYKV Trigger: TACTTTGTACTTTGGTATAAACTGCATGGATACCAATCCCTTTTCACAGGTTTTCATCTCCTGGTCTCCCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000595783.1 |
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