Pregenerated sensors for LINC01831 (Homo sapiens)
Ensembl gene IDs: ENSG00000225765Ensembl transcript IDs: ENST00000449772.1, ENST00000658461.1, ENST00000661379.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAAGTTGAAGTCCAAAGATCTCTGGCCAATCAAAGGGTTCGTTTCTaGCCCCTGGTGGATGGAGAGGCATTTCCACACGCCCATTATGTT | + |
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Preference number: 5 (lower is better) Translates to: KVEVQRSLANQRVRF*PLVDGEAFPHAHYV Trigger: AACATAATGGGCGTGTGGAAATGCCTCTCCATCCACCAGGGGGCAGAAACGAACCCTTTGATTGGCCAGAGATCTTTGGACTTCAACTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS CCA 90 bp | AAGTCCAAAGATCTCTGGCCAATCAAAGGGTTCGTTTCTGCCCCCTaGTGGATGGAGAGGCATTTCCACACGCCCATTATGTTAGTTGTA | + |
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Preference number: 5 (lower is better) Translates to: KSKDLWPIKGFVSAP*WMERHFHTPIMLVV Trigger: TACAACTAACATAATGGGCGTGTGGAAATGCCTCTCCATCCACCAGGGGGCAGAAACGAACCCTTTGATTGGCCAGAGATCTTTGGACTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS CCA 90 bp | TCCAAAGATCTCTGGCCAATCAAAGGGTTCGTTTCTGCCCCCTGGTaGATGGAGAGGCATTTCCACACGCCCATTATGTTAGTTGTAAAA | + |
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Preference number: 5 (lower is better) Translates to: SKDLWPIKGFVSAPW*MERHFHTPIMLVVK Trigger: TTTTACAACTAACATAATGGGCGTGTGGAAATGCCTCTCCATCCACCAGGGGGCAGAAACGAACCCTTTGATTGGCCAGAGATCTTTGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS GCA 90 bp | AGAGTAGGTTTGTTTCCAGGAAGAAATACCAGACGGAGTTCCGTATaGTTGCCTTCCACAGAGAGCTCACACTTCAAAATGTCCAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: RVGLFPGRNTRRSSV*LPSTESSHFKMSSD Trigger: ATCACTGGACATTTTGAAGTGTGAGCTCTCTGTGGAAGGCAAGCATACGGAACTCCGTCTGGTATTTCTTCCTGGAAACAAACCTACTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661379.1 |
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| CDS CCA 90 bp | GCAAATTACAACTATTCCAAATCAAAGTTGAAGTCCAAAGATCTCTaGCCAATCAAAGGGTTCGTTTCTGCCCCCTGGTGGATGGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: ANYNYSKSKLKSKDL*PIKGFVSAPWWMER Trigger: CCTCTCCATCCACCAGGGGGCAGAAACGAACCCTTTGATTGGCCAGAGATCTTTGGACTTCAACTTTGATTTGGAATAGTTGTAATTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS TCA 90 bp | AAAGGTCAGGCACTCCATGCCTCAAAAGACAAATCCACGAAAATATaGAGACCACCATATGTAAGACCCAGCATTCCCATCACATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: KGQALHASKDKSTKI*RPPYVRPSIPITSL Trigger: GAGAGATGTGATGGGAATGCTGGGTCTTACATATGGTGGTCTTCATATTTTCGTGGATTTGTCTTTTGAGGCATGGAGTGCCTGACCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS TCA 90 bp | CGTATGCTTGCCTTCCACAGAGAGCTCACACTTCAAAATGTCCAGTaGTCTCCGAAAACTGAGCAGACCAAGAGTGTCAGCTTAATTATT | + |
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Preference number: 5 (lower is better) Translates to: RMLAFHRELTLQNVQ*SPKTEQTKSVSLII Trigger: AATAATTAAGCTGACACTCTTGGTCTGCTCAGTTTTCGGAGATCACTGGACATTTTGAAGTGTGAGCTCTCTGTGGAAGGCAAGCATACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000661379.1 |
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| CDS CCA 90 bp | ATTTTTGTGATTTCTTCTATTAGAAGGGCACAGGAGCACAGACTTTaGATTGCTACCGCATTCATCTATTTGTTTCCAGGAAGAAATACC | + |
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Preference number: 5 (lower is better) Translates to: IFVISSIRRAQEHRL*IATAFIYLFPGRNT Trigger: GGTATTTCTTCCTGGAAACAAATAGATGAATGCGGTAGCAATCCAAAGTCTGTGCTCCTGTGCCCTTCTAATAGAAGAAATCACAAAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658461.1 |
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| CDS TCA 90 bp | GGTAGAGTGAAGTTTAGAGTTTCACACAGAATTAAGAGGTTTCTTTaGAAAGTCTATATGGTTATGTTCCTAGTGACAGAAAGAGTGATG | + |
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Preference number: 5 (lower is better) Translates to: GRVKFRVSHRIKRFL*KVYMVMFLVTERVM Trigger: CATCACTCTTTCTGTCACTAGGAACATAACCATATAGACTTTTCAAAGAAACCTCTTAATTCTGTGTGAAACTCTAAACTTCACTCTACC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS GCA 72 bp | GTCCAAAGATCTCTGGCCAATCAAAGGGTTCGTTTCTaGCCCCTGGTGGATGGAGAGGCATTTCCACACGCC | + |
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Preference number: 6 (lower is better) Translates to: VQRSLANQRVRF*PLVDGEAFPHA Trigger: GGCGTGTGGAAATGCCTCTCCATCCACCAGGGGGCAGAAACGAACCCTTTGATTGGCCAGAGATCTTTGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS CCA 72 bp | CTCTGGCCAATCAAAGGGTTCGTTTCTGCCCCCTGGTaGATGGAGAGGCATTTCCACACGCCCATTATGTTA | + |
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Preference number: 6 (lower is better) Translates to: LWPIKGFVSAPW*MERHFHTPIML Trigger: TAACATAATGGGCGTGTGGAAATGCCTCTCCATCCACCAGGGGGCAGAAACGAACCCTTTGATTGGCCAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS CAA 90 bp | GTAGGTTTGTTTCCAGGAAGAAATACCAGACGGAGTTCCGTATGCTaGCCTTCCACAGAGAGCTCACACTTCAAAATGTCCAGTGATCTC | + |
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Preference number: 6 (lower is better) Translates to: VGLFPGRNTRRSSVC*PSTESSHFKMSSDL Trigger: GAGATCACTGGACATTTTGAAGTGTGAGCTCTCTGTGGAAGGCAAGCATACGGAACTCCGTCTGGTATTTCTTCCTGGAAACAAACCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661379.1 |
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| CDS GCA 72 bp | TTCCAGGAAGAAATACCAGACGGAGTTCCGTATGCTTaGCTTCCACAGAGAGCTCACACTTCAAAATGTCCA | + |
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Preference number: 6 (lower is better) Translates to: FQEEIPDGVPYA*LPQRAHTSKCP Trigger: TGGACATTTTGAAGTGTGAGCTCTCTGTGGAAGGCAAGCATACGGAACTCCGTCTGGTATTTCTTCCTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661379.1 |
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| CDS GCA 72 bp | TTGTTTCCAGGAAGAAATACCAGACGGAGTTCCGTATaGTTGCCTTCCACAGAGAGCTCACACTTCAAAATG | + |
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Preference number: 6 (lower is better) Translates to: LFPGRNTRRSSV*LPSTESSHFKM Trigger: CATTTTGAAGTGTGAGCTCTCTGTGGAAGGCAAGCATACGGAACTCCGTCTGGTATTTCTTCCTGGAAACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000658461.1 ENST00000661379.1 |
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| CDS CCA 72 bp | AACTATTCCAAATCAAAGTTGAAGTCCAAAGATCTCTaGCCAATCAAAGGGTTCGTTTCTGCCCCCTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: NYSKSKLKSKDL*PIKGFVSAPWW Trigger: CCACCAGGGGGCAGAAACGAACCCTTTGATTGGCCAGAGATCTTTGGACTTCAACTTTGATTTGGAATAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS TCA 72 bp | GCACTCCATGCCTCAAAAGACAAATCCACGAAAATATaGAGACCACCATATGTAAGACCCAGCATTCCCATC | + |
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Preference number: 6 (lower is better) Translates to: ALHASKDKSTKI*RPPYVRPSIPI Trigger: GATGGGAATGCTGGGTCTTACATATGGTGGTCTTCATATTTTCGTGGATTTGTCTTTTGAGGCATGGAGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000449772.1 ENST00000658461.1 ENST00000661379.1 |
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| CDS CAA 72 bp | CTTCTATTAGAAGGGCACAGGAGCACAGACTTTGGATaGCTACCGCATTCATCTATTTGTTTCCAGGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: LLLEGHRSTDFG*LPHSSICFQEE Trigger: TTCTTCCTGGAAACAAATAGATGAATGCGGTAGCAATCCAAAGTCTGTGCTCCTGTGCCCTTCTAATAGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658461.1 |
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| CDS CAA 72 bp | AGCATTAAAATTATTAATAGCCCTGTTTCTGTGTTCTaGGGAGACAGTGACAGAGTTTACATGCTAGCGAAT | + |
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Preference number: 6 (lower is better) Translates to: SIKIINSPVSVF*GDSDRVYMLAN Trigger: ATTCGCTAGCATGTAAACTCTGTCACTGTCTCCCAAGAACACAGAAACAGGGCTATTAATAATTTTAATGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000658461.1 ENST00000661379.1 |
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| CDS CAA 90 bp | AAAACAGTAAGCATTAAAATTATTAATAGCCCTGTTTCTGTGTTCTaGGGAGACAGTGACAGAGTTTACATGCTAGCGAATCTTGCATAC | + |
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Preference number: 6 (lower is better) Translates to: KTVSIKIINSPVSVF*GDSDRVYMLANLAY Trigger: GTATGCAAGATTCGCTAGCATGTAAACTCTGTCACTGTCTCCCAAGAACACAGAAACAGGGCTATTAATAATTTTAATGCTTACTGTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000658461.1 ENST00000661379.1 |
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