Pregenerated sensors for LINC01829 (Homo sapiens)
Ensembl gene IDs: ENSG00000236780Ensembl transcript IDs: ENST00000414404.1, ENST00000433133.5, ENST00000447453.1, ENST00000652561.2, ENST00000657304.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAAAAACCCTCTAATCATTGTGTTGCTTGTTCAGATTCTGCCAAATaGACTCTCACAGATTTGGAGCTGGAGCTCTGTTTGCGGGAGGGC | + |
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Preference number: 5 (lower is better) Translates to: QKPSNHCVACSDSAK*TLTDLELELCLREG Trigger: GCCCTCCCGCAAACAGAGCTCCAGCTCCAAATCTGTGAGAGTGCATTTGGCAGAATCTGAACAAGCAACACAATGATTAGAGGGTTTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000652561.2 |
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| CDS CCA 90 bp | CTGCATATCACAGCTGGGCCAGGGATCTCTGAATCCTGGGAAACTTaGAACTCTGGAACTCAGCTTGATCAAAGAGAAGGTTCTTTAGCT | + |
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Preference number: 5 (lower is better) Translates to: LHITAGPGISESWET*NSGTQLDQREGSLA Trigger: AGCTAAAGAACCTTCTCTTTGATCAAGCTGAGTTCCAGAGTTCCAAGTTTCCCAGGATTCAGAGATCCCTGGCCCAGCTGTGATATGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000433133.5 ENST00000447453.1 |
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| CDS CCA 90 bp | GTTTTGAGACTGCATATCACAGCTGGGCCAGGGATCTCTGAATCCTaGGAAACTTGGAACTCTGGAACTCAGCTTGATCAAAGAGAAGGT | + |
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Preference number: 5 (lower is better) Translates to: VLRLHITAGPGISES*ETWNSGTQLDQREG Trigger: ACCTTCTCTTTGATCAAGCTGAGTTCCAGAGTTCCAAGTTTCCCAGGATTCAGAGATCCCTGGCCCAGCTGTGATATGCAGTCTCAAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000433133.5 ENST00000447453.1 |
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| CDS TCA 90 bp | ATTTTAGAGAGTAAATGGTCTCAGGAAGGTGCTAAAAGTGTTGAATaGCTTGGAGTCTGTATTTCCACAACCACCGAGCATGTGAACAGG | + |
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Preference number: 5 (lower is better) Translates to: ILESKWSQEGAKSVE*LGVCISTTTEHVNR Trigger: CCTGTTCACATGCTCGGTGGTTGTGGAAATACAGACTCCAAGTCATTCAACACTTTTAGCACCTTCCTGAGACCATTTACTCTCTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000433133.5 ENST00000447453.1 |
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| CDS TCA 72 bp | TCACCACCATTCTGGTCAGCCTGGCTGGATGACATCTaGGGGCTCGGAGGTCCCTGCTGCTCAGTGTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: SPPFWSAWLDDI*GLGGPCCSVCQ Trigger: CTGGCACACTGAGCAGCAGGGACCTCCGAGCCCTCAGATGTCATCCAGCCAGGCTGACCAGAATGGTGGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652561.2 |
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| CDS CAA 90 bp | CATGGACTGGTGTGGAGAGCATCAGACACCAAATCTGCTGGCGCCTaGATCTTAAACTTCCCAGCTTCTGAAACTTGCCTCCAGGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: HGLVWRASDTKSAGA*ILNFPASETCLQGA Trigger: AGCGCCCTGGAGGCAAGTTTCAGAAGCTGGGAAGTTTAAGATCAAGGCGCCAGCAGATTTGGTGTCTGATGCTCTCCACACCAGTCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433133.5 |
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| CDS CCA 72 bp | AAAAACAGTCCTGAATCATTGACACCACGGCAGCCATaGACTGGTGTGGAGAGCATCAGACACCAAATCTGC | + |
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Preference number: 6 (lower is better) Translates to: KNSPESLTPRQP*TGVESIRHQIC Trigger: GCAGATTTGGTGTCTGATGCTCTCCACACCAGTCCATGGCTGCCGTGGTGTCAATGATTCAGGACTGTTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000433133.5 |
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| CDS CCA 72 bp | ACAGCTGGGCCAGGGATCTCTGAATCCTGGGAAACTTaGAACTCTGGAACTCAGCTTGATCAAAGAGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: TAGPGISESWET*NSGTQLDQREG Trigger: ACCTTCTCTTTGATCAAGCTGAGTTCCAGAGTTCCAAGTTTCCCAGGATTCAGAGATCCCTGGCCCAGCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000433133.5 ENST00000447453.1 |
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| CDS CCA 72 bp | CTGCATATCACAGCTGGGCCAGGGATCTCTGAATCCTaGGAAACTTGGAACTCTGGAACTCAGCTTGATCAA | + |
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Preference number: 6 (lower is better) Translates to: LHITAGPGISES*ETWNSGTQLDQ Trigger: TTGATCAAGCTGAGTTCCAGAGTTCCAAGTTTCCCAGGATTCAGAGATCCCTGGCCCAGCTGTGATATGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000433133.5 ENST00000447453.1 |
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| CDS CAA 72 bp | GTGTGGAGAGCATCAGACACCAAATCTGCTGGCGCCTaGATCTTAAACTTCCCAGCTTCTGAAACTTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: VWRASDTKSAGA*ILNFPASETCL Trigger: GAGGCAAGTTTCAGAAGCTGGGAAGTTTAAGATCAAGGCGCCAGCAGATTTGGTGTCTGATGCTCTCCACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433133.5 |
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| CDS TCA 72 bp | AGTCATGGAACTAACCAAGAAGATATCAGGGTCCATTaGGGTCTGTGTTGCACAGGGTCAGCTCTGTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: SHGTNQEDIRVH*GLCCTGSALSR Trigger: TCTGGACAGAGCTGACCCTGTGCAACACAGACCTCAATGGACCCTGATATCTTCTTGGTTAGTTCCATGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433133.5 |
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| CDS CAA 90 bp | GGGAAAGATGAACTGTTCATATCATCTCTCCAGATGTTTTGTGTTTaGAGACTGCATATCACAGCTGGGCCAGGGATCTCTGAATCCTGG | + |
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Preference number: 6 (lower is better) Translates to: GKDELFISSLQMFCV*RLHITAGPGISESW Trigger: CCAGGATTCAGAGATCCCTGGCCCAGCTGTGATATGCAGTCTCAAAACACAAAACATCTGGAGAGATGATATGAACAGTTCATCTTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000433133.5 ENST00000447453.1 |
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| CDS CAA 90 bp | AGGGGCACGAGGAAACTTCTGGGGGTGATGAATAGGTTCATTATCTaGATCGTAGTGAAGATTCCAGGGAGTATATTTGGTACCAGGTAC | + |
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Preference number: 6 (lower is better) Translates to: RGTRKLLGVMNRFII*IVVKIPGSIFGTRY Trigger: GTACCTGGTACCAAATATACTCCCTGGAATCTTCACTACGATCAAGATAATGAACCTATTCATCACCCCCAGAAGTTTCCTCGTGCCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000652561.2 |
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| CDS CAA 72 bp | TCACTCCAGCAGAGCCAGTCTTATGTCCCCTTTCTGTaGGAGTATGGTTCACCAACCTTTTTAAGTGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: SLQQSQSYVPFL*EYGSPTFLSES Trigger: GCTTTCACTTAAAAAGGTTGGTGAACCATACTCCAACAGAAAGGGGACATAAGACTGGCTCTGCTGGAGTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000652561.2 |
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| CDS CAA 90 bp | ACAGGGTCAGCTCTGTCCAGACACCACAGGATGTGTTGTTCTGTCTaGATTTTTCCTGGTTTTAACTTCATGTCTCTGGAAGAGGAATTG | + |
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Preference number: 6 (lower is better) Translates to: TGSALSRHHRMCCSV*IFPGFNFMSLEEEL Trigger: CAATTCCTCTTCCAGAGACATGAAGTTAAAACCAGGAAAAATCAAGACAGAACAACACATCCTGTGGTGTCTGGACAGAGCTGACCCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433133.5 |
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| CDS TCA 72 bp | CCGATCAAGGGTATGTTATCAAAACAATTGCCACTCTaGGTCAGTGGAATTCAATCAGAGGGAACTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: PIKGMLSKQLPL*VSGIQSEGTLG Trigger: TCCCAGAGTTCCCTCTGATTGAATTCCACTGACTCAGAGTGGCAATTGTTTTGATAACATACCCTTGATCGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447453.1 |
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| CDS TCA 72 bp | AGTAAATGGTCTCAGGAAGGTGCTAAAAGTGTTGAATaGCTTGGAGTCTGTATTTCCACAACCACCGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: SKWSQEGAKSVE*LGVCISTTTEH Trigger: ATGCTCGGTGGTTGTGGAAATACAGACTCCAAGTCATTCAACACTTTTAGCACCTTCCTGAGACCATTTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000433133.5 ENST00000447453.1 |
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| CDS TCA 72 bp | GAAGTTACTGTGGTTTGGTTTCCCCAGCAGCAGACCTaGGGACAAGAATTGAGTGTAAGTAGTTTATTTTGG | + |
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Preference number: 6 (lower is better) Translates to: EVTVVWFPQQQT*GQELSVSSLFW Trigger: CCAAAATAAACTACTTACACTCAATTCTTGTCCTCAGGTCTGCTGCTGGGGAAACCAAACCACAGTAACTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447453.1 |
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| CDS GCA 72 bp | GAAGGAAGCCGATCAAGGGTATGTTATCAAAACAATTaGCACTCTGAGTCAGTGGAATTCAATCAGAGGGAA | + |
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Preference number: 6 (lower is better) Translates to: EGSRSRVCYQNN*HSESVEFNQRE Trigger: TTCCCTCTGATTGAATTCCACTGACTCAGAGTGGCAATTGTTTTGATAACATACCCTTGATCGGCTTCCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447453.1 |
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| CDS CCA 72 bp | ATGACATATTCCAAGTATATATTTCTGAAGTTACTGTaGTTTGGTTTCCCCAGCAGCAGACCTTGCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: MTYSKYIFLKLL*FGFPSSRPCLQ Trigger: CTGGAGGCAAGGTCTGCTGCTGGGGAAACCAAACCACAGTAACTTCAGAAATATATACTTGGAATATGTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000414404.1 ENST00000652561.2 ENST00000657304.1 |
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| CDS CCA 72 bp | ATGACATATTCCAAGTATATATTTCTGAAGTTACTGTaGTTTGGTTTCCCCAGCAGCAGACCTGAGGACAAG | + |
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Preference number: 6 (lower is better) Translates to: MTYSKYIFLKLL*FGFPSSRPEDK Trigger: CTTGTCCTCAGGTCTGCTGCTGGGGAAACCAAACCACAGTAACTTCAGAAATATATACTTGGAATATGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447453.1 |
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| CDS TCA 72 bp | ACTAACCTTCTTCTCTTCTTAATATTCTCCCATAGGTaGTTTCCTTCATATCCACGGTGTCTTTACCCATTA | + |
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Preference number: 6 (lower is better) Translates to: TNLLLFLIFSHR*FPSYPRCLYPL Trigger: TAATGGGTAAAGACACCGTGGATATGAAGGAAATCACCTATGGGAGAATATTAAGAAGAGAAGAAGGTTAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447453.1 |
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| CDS GCA 72 bp | CTTATAGAAGTTGAATCTATATTTAAGAATAGTCACTaGCCTCCTGTAAATTCAAGAAACTCACGAGGGGAC | + |
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Preference number: 6 (lower is better) Translates to: LIEVESIFKNSH*PPVNSRNSRGD Trigger: GTCCCCTCGTGAGTTTCTTGAATTTACAGGAGGGCAGTGACTATTCTTAAATATAGATTCAACTTCTATAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657304.1 |
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| CDS CAA 90 bp | CAGGAGTCAAAAATGAATCTAATCCCATTTGATAGAATAACGCCATaGCTAAATAGATACACACACACACACACACACATACACACACAT | + |
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Preference number: 6 (lower is better) Translates to: QESKMNLIPFDRITP*LNRYTHTHTHIHTH Trigger: ATGTGTGTGTATGTGTGTGTGTGTGTGTGTGTATCTATTTAGCAATGGCGTTATTCTATCAAATGGGATTAGATTCATTTTTGACTCCTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000652561.2 |
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