Pregenerated sensors for LINC01824 (Homo sapiens)
Ensembl gene IDs: ENSG00000226488Ensembl transcript IDs: ENST00000436082.2, ENST00000660485.1, ENST00000661143.1, ENST00000663983.1, ENST00000668317.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGTATGTTGGGCTGTAGGTCTCCAGCCTTGTTCATCCTTCATATTTaGTACTTTCTATCCCCTGACCTACCCCGCCAGTTTCCTTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: GMLGCRSPALFILHI*YFLSPDLPRQFPSP Trigger: GGGAGAAGGAAACTGGCGGGGTAGGTCAGGGGATAGAAAGTAGCAAATATGAAGGATGAACAAGGCTGGAGACCTACAGCCCAACATACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS TCA 90 bp | GTCTCCAGCCTTGTTCATCCTTCATATTTGCTACTTTCTATCCCCTaGCCTACCCCGCCAGTTTCCTTCTCCCACTCCCAAACATCATCA | + |
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Preference number: 5 (lower is better) Translates to: VSSLVHPSYLLLSIP*PTPPVSFSHSQTSS Trigger: TGATGATGTTTGGGAGTGGGAGAAGGAAACTGGCGGGGTAGGTCAGGGGATAGAAAGTAGCAAATATGAAGGATGAACAAGGCTGGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS GCA 90 bp | ATTCCGCTTCTCATCAGGTATCAGCCTAACCTTTTGAGGCTGCAGTaGTTGAGGTGGTATGATGTCTGTGAGAGAAAGATGATGTGTGTA | + |
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Preference number: 5 (lower is better) Translates to: IPLLIRYQPNLLRLQ*LRWYDVCERKMMCV Trigger: TACACACATCATCTTTCTCTCACAGACATCATACCACCTCAAGCACTGCAGCCTCAAAAGGTTAGGCTGATACCTGATGAGAAGCGGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS CCA 90 bp | GAGAAGTCACACATTAGTAAATTCTCAAACCTAACATCCGGATTCTaGGAGGACAGATGCTTTCCTGCAAGGGTGGTCTTCACTAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: EKSHISKFSNLTSGF*EDRCFPARVVFTRR Trigger: TCTTCTAGTGAAGACCACCCTTGCAGGAAAGCATCTGTCCTCCCAGAATCCGGATGTTAGGTTTGAGAATTTACTAATGTGTGACTTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000436082.2 ENST00000661143.1 ENST00000663983.1 |
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| CDS CCA 90 bp | ATGAATCCCAAATACAGCTCGAGTTTATTACTTGTAGTGGTATGTTaGGCTGTAGGTCTCCAGCCTTGTTCATCCTTCATATTTGCTACT | + |
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Preference number: 5 (lower is better) Translates to: MNPKYSSSLLLVVVC*AVGLQPCSSFIFAT Trigger: AGTAGCAAATATGAAGGATGAACAAGGCTGGAGACCTACAGCCCAACATACCACTACAAGTAATAAACTCGAGCTGTATTTGGGATTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS TCA 90 bp | ATATTTTTAACCCATACACATAATGTACTTGGCAATGATCATTGCTaGAGTTGCATAATTCCGCTTCTCATCAGGTATCAGCCTAACCTT | + |
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Preference number: 5 (lower is better) Translates to: IFLTHTHNVLGNDHC*SCIIPLLIRYQPNL Trigger: AAGGTTAGGCTGATACCTGATGAGAAGCGGAATTATGCAACTTCAGCAATGATCATTGCCAAGTACATTATGTGTATGGGTTAAAAATAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS CCA 72 bp | CCGGATTCTGGGAGGACAGATGCTTTCCTGCAAGGGTaGTCTTCACTAGAAGAGTATCAGCTCCTAGATGGG | + |
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Preference number: 6 (lower is better) Translates to: PDSGRTDAFLQG*SSLEEYQLLDG Trigger: CCCATCTAGGAGCTGATACTCTTCTAGTGAAGACCACCCTTGCAGGAAAGCATCTGTCCTCCCAGAATCCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000436082.2 ENST00000661143.1 ENST00000663983.1 |
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| CDS GCA 72 bp | GGCTGTAGGTCTCCAGCCTTGTTCATCCTTCATATTTaGTACTTTCTATCCCCTGACCTACCCCGCCAGTTT | + |
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Preference number: 6 (lower is better) Translates to: GCRSPALFILHI*YFLSPDLPRQF Trigger: AAACTGGCGGGGTAGGTCAGGGGATAGAAAGTAGCAAATATGAAGGATGAACAAGGCTGGAGACCTACAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS TCA 72 bp | CTTGTTCATCCTTCATATTTGCTACTTTCTATCCCCTaGCCTACCCCGCCAGTTTCCTTCTCCCACTCCCAA | + |
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Preference number: 6 (lower is better) Translates to: LVHPSYLLLSIP*PTPPVSFSHSQ Trigger: TTGGGAGTGGGAGAAGGAAACTGGCGGGGTAGGTCAGGGGATAGAAAGTAGCAAATATGAAGGATGAACAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS CAA 90 bp | CCGCTTCTCATCAGGTATCAGCCTAACCTTTTGAGGCTGCAGTGCTaGAGGTGGTATGATGTCTGTGAGAGAAAGATGATGTGTGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: PLLIRYQPNLLRLQC*RWYDVCERKMMCVE Trigger: CTCTACACACATCATCTTTCTCTCACAGACATCATACCACCTCAAGCACTGCAGCCTCAAAAGGTTAGGCTGATACCTGATGAGAAGCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS GCA 72 bp | TCCATTATGTGCACATTATCCAGATGGCCTGAAGAATaGTGTCCATGCATGGGTTTAGTCCTGGTTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SIMCTLSRWPEE*CPCMGLVLVPE Trigger: CTCAGGAACCAGGACTAAACCCATGCATGGACAGCATTCTTCAGGCCATCTGGATAATGTGCACATAATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660485.1 |
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| CDS GCA 72 bp | CTCATCAGGTATCAGCCTAACCTTTTGAGGCTGCAGTaGTTGAGGTGGTATGATGTCTGTGAGAGAAAGATG | + |
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Preference number: 6 (lower is better) Translates to: LIRYQPNLLRLQ*LRWYDVCERKM Trigger: CATCTTTCTCTCACAGACATCATACCACCTCAAGCACTGCAGCCTCAAAAGGTTAGGCTGATACCTGATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS GCA 72 bp | AGAATCACTCAGGAATTTCCCCTTTTGAGGCTGCAGTaGTTGAGGTGGTATGATGTCTGTGAGAGAAAGATG | + |
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Preference number: 6 (lower is better) Translates to: RITQEFPLLRLQ*LRWYDVCERKM Trigger: CATCTTTCTCTCACAGACATCATACCACCTCAAGCACTGCAGCCTCAAAAGGGGAAATTCCTGAGTGATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000436082.2 ENST00000661143.1 ENST00000663983.1 |
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| CDS CCA 72 bp | CACATTAGTAAATTCTCAAACCTAACATCCGGATTCTaGGAGGACAGATGCTTTCCTGCAAGGGTGGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: HISKFSNLTSGF*EDRCFPARVVF Trigger: GAAGACCACCCTTGCAGGAAAGCATCTGTCCTCCCAGAATCCGGATGTTAGGTTTGAGAATTTACTAATGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000436082.2 ENST00000661143.1 ENST00000663983.1 |
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| CDS CAA 72 bp | ATCAGGTATCAGCCTAACCTTTTGAGGCTGCAGTGCTaGAGGTGGTATGATGTCTGTGAGAGAAAGATGATG | + |
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Preference number: 6 (lower is better) Translates to: IRYQPNLLRLQC*RWYDVCERKMM Trigger: CATCATCTTTCTCTCACAGACATCATACCACCTCAAGCACTGCAGCCTCAAAAGGTTAGGCTGATACCTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS CAA 72 bp | ATAATTCCGCTTCTCATCAGGTATCAGCCTAACCTTTaGAGGCTGCAGTGCTTGAGGTGGTATGATGTCTGT | + |
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Preference number: 6 (lower is better) Translates to: IIPLLIRYQPNL*RLQCLRWYDVC Trigger: ACAGACATCATACCACCTCAAGCACTGCAGCCTCAAAAGGTTAGGCTGATACCTGATGAGAAGCGGAATTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS CAA 72 bp | ACTTGTAGTGGTATGTTGGGCTGTAGGTCTCCAGCCTaGTTCATCCTTCATATTTGCTACTTTCTATCCCCT | + |
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Preference number: 6 (lower is better) Translates to: TCSGMLGCRSPA*FILHICYFLSP Trigger: AGGGGATAGAAAGTAGCAAATATGAAGGATGAACAAGGCTGGAGACCTACAGCCCAACATACCACTACAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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| CDS TCA 72 bp | GTTGTATTTCTCTGCGACTCTCTTGTGGATTTTCCATaGTCCATTATGTGCACATTATCCAGATGGCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: VVFLCDSLVDFP*SIMCTLSRWPE Trigger: TTCAGGCCATCTGGATAATGTGCACATAATGGATCATGGAAAATCCACAAGAGAGTCGCAGAGAAATACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660485.1 |
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| CDS CCA 72 bp | AAACATAAGCAACTGATTGTCCCAAATAATCGGAAGTaGAGGGGTAAGATAACTACAGCAGTTGGCTCAACT | + |
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Preference number: 6 (lower is better) Translates to: KHKQLIVPNNRK*RGKITTAVGST Trigger: AGTTGAGCCAACTGCTGTAGTTATCTTACCCCTCCACTTCCGATTATTTGGGACAATCAGTTGCTTATGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660485.1 |
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| CDS TCA 72 bp | CAGGGAATTCAGTTTAACAGCTTAAACATAAGCAACTaGTTGTCCCAAATAATCGGAAGTGGAGGGGTAAGA | + |
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Preference number: 6 (lower is better) Translates to: QGIQFNSLNISN*LSQIIGSGGVR Trigger: TCTTACCCCTCCACTTCCGATTATTTGGGACAATCAGTTGCTTATGTTTAAGCTGTTAAACTGAATTCCCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660485.1 |
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| CDS TCA 72 bp | ACCCATACACATAATGTACTTGGCAATGATCATTGCTaGAGTTGCATAATTCCGCTTCTCATCAGGTATCAG | + |
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Preference number: 6 (lower is better) Translates to: THTHNVLGNDHC*SCIIPLLIRYQ Trigger: CTGATACCTGATGAGAAGCGGAATTATGCAACTTCAGCAATGATCATTGCCAAGTACATTATGTGTATGGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668317.1 |
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