Pregenerated sensors for LINC01822 (Homo sapiens)
Ensembl gene IDs: ENSG00000229621Ensembl transcript IDs: ENST00000435682.1, ENST00000663972.1, ENST00000664721.1, ENST00000668104.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCAGGCTGCAGAGCCAGTCTCTTTCTGGTCAGCTGTCACCTCTTCTaGTCTTCTGGCTCCCCTGGTGCCTTTCATCACTTTCAGTTAAAC | + |
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Preference number: 5 (lower is better) Translates to: PGCRASLFLVSCHLF*SSGSPGAFHHFQLN Trigger: GTTTAACTGAAAGTGATGAAAGGCACCAGGGGAGCCAGAAGAGCAGAAGAGGTGACAGCTGACCAGAAAGAGACTGGCTCTGCAGCCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS GCA 90 bp | CCAGGCTGCAGAGCCAGTCTCTTTCTGGTCAGCTGTCACCTCTTCTaGTCTTCTGGCTCCCCTGGTGCCGCCAATATCAAACATATGATT | + |
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Preference number: 5 (lower is better) Translates to: PGCRASLFLVSCHLF*SSGSPGAANIKHMI Trigger: AATCATATGTTTGATATTGGCGGCACCAGGGGAGCCAGAAGAGCAGAAGAGGTGACAGCTGACCAGAAAGAGACTGGCTCTGCAGCCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663972.1 ENST00000664721.1 |
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| CDS TCA 90 bp | AACTTCTTTCCCAAACATGTTCATGAGAGTAATTCTGGACAGCTCTaGGGCCTGCAGCTGCAGTACCTTTCCATGACAGGTTGCCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: NFFPKHVHESNSGQL*GLQLQYLSMTGCPG Trigger: GCCTGGGCAACCTGTCATGGAAAGGTACTGCAGCTGCAGGCCTCAGAGCTGTCCAGAATTACTCTCATGAACATGTTTGGGAAAGAAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS GCA 90 bp | TGCTGGGTGAGAGCACTGCAGATGCATCAACATTCATGCATGCCATaGAGACAACCCACAAGTGCAGACACACACAGTGATTGGAATGAC | + |
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Preference number: 5 (lower is better) Translates to: CWVRALQMHQHSCMP*RQPTSADTHSDWND Trigger: GTCATTCCAATCACTGTGTGTGTCTGCACTTGTGGGTTGTCTGCATGGCATGCATGAATGTTGATGCATCTGCAGTGCTCTCACCCAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS GCA 90 bp | ATGCTTCTCTGCTGGGTGAGAGCACTGCAGATGCATCAACATTCATaGATGCCATGCAGACAACCCACAAGTGCAGACACACACAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: MLLCWVRALQMHQHS*MPCRQPTSADTHSD Trigger: ATCACTGTGTGTGTCTGCACTTGTGGGTTGTCTGCATGGCATGCATGAATGTTGATGCATCTGCAGTGCTCTCACCCAGCAGAGAAGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS TCA 90 bp | GGCAAATCGTGTATCTGTACAGGTGTCATCTCATTCTTAGTCACATaGTGGATAATCTCCAGGCTGGAAGGCTCAGGCAATGGGATTAAG | + |
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Preference number: 5 (lower is better) Translates to: GKSCICTGVISFLVT*WIISRLEGSGNGIK Trigger: CTTAATCCCATTGCCTGAGCCTTCCAGCCTGGAGATTATCCATCATGTGACTAAGAATGAGATGACACCTGTACAGATACACGATTTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS TCA 90 bp | ACACACAGTGATTGGAATGACATCAGATGTGGTTTAAGACAAGCCTaGCTTCATCATAACTATTCTCTCCCTCACACCAACTCCCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: THSDWNDIRCGLRQA*LHHNYSLPHTNSPA Trigger: AGCAGGGGAGTTGGTGTGAGGGAGAGAATAGTTATGATGAAGTCAGGCTTGTCTTAAACCACATCTGATGTCATTCCAATCACTGTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS TCA 90 bp | CTAATATTGGAATCTCTCTCTAAGACCTACAGGAATGAACACCCCTaGATATTGCCAGATATAGAGGCTTCCAATAGACCATCAGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: LILESLSKTYRNEHP*ILPDIEASNRPSGN Trigger: GTTGCCTGATGGTCTATTGGAAGCCTCTATATCTGGCAATATTCAGGGGTGTTCATTCCTGTAGGTCTTAGAGAGAGATTCCAATATTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS GCA 90 bp | AATCCTATTGCTCCCCTAAAAAGACTCCTACCTGTAACACACTCTTaGCTCTACTTCATAACTTCTTTCCCAAACATGTTCATGAGAGTA | + |
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Preference number: 5 (lower is better) Translates to: NPIAPLKRLLPVTHS*LYFITSFPNMFMRV Trigger: TACTCTCATGAACATGTTTGGGAAAGAAGTTATGAAGTAGAGGCAAGAGTGTGTTACAGGTAGGAGTCTTTTTAGGGGAGCAATAGGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000435682.1 |
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| CDS TCA 72 bp | GACAGCTCTGAGGCCTGCAGCTGCAGTACCTTTCCATaGCAGGTTGCCCAGGCTGCAGAGCCAGTCTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: DSSEACSCSTFP*QVAQAAEPVSF Trigger: GAAAGAGACTGGCTCTGCAGCCTGGGCAACCTGTCATGGAAAGGTACTGCAGCTGCAGGCCTCAGAGCTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS GCA 72 bp | CAGCTGCAGTACCTTTCCATGACAGGTTGCCCAGGCTaGAGAGCCAGTCTCTTTCTGGTCAGCTGTCACCTC | + |
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Preference number: 6 (lower is better) Translates to: QLQYLSMTGCPG*RASLFLVSCHL Trigger: GAGGTGACAGCTGACCAGAAAGAGACTGGCTCTGCAGCCTGGGCAACCTGTCATGGAAAGGTACTGCAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS GCA 72 bp | TGCTGGGTGAGAGCACTGCAGATGCATCAACATTCATaGATGCCATGCAGACAACCCACAAGTGCAGACACA | + |
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Preference number: 6 (lower is better) Translates to: CWVRALQMHQHS*MPCRQPTSADT Trigger: TGTGTCTGCACTTGTGGGTTGTCTGCATGGCATGCATGAATGTTGATGCATCTGCAGTGCTCTCACCCAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS TCA 72 bp | CCCAAACATGTTCATGAGAGTAATTCTGGACAGCTCTaGGGCCTGCAGCTGCAGTACCTTTCCATGACAGGT | + |
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Preference number: 6 (lower is better) Translates to: PKHVHESNSGQL*GLQLQYLSMTG Trigger: ACCTGTCATGGAAAGGTACTGCAGCTGCAGGCCTCAGAGCTGTCCAGAATTACTCTCATGAACATGTTTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS CAA 90 bp | GAAGCCCATATTCAAATTCCAGTACTAAGCCCGCTGGCAGGACGTTaGATGAGATGTTCCCAGAAGCACAAACTTGACCAGAGAACAGTC | + |
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Preference number: 6 (lower is better) Translates to: EAHIQIPVLSPLAGR*MRCSQKHKLDQRTV Trigger: GACTGTTCTCTGGTCAAGTTTGTGCTTCTGGGAACATCTCATCAAACGTCCTGCCAGCGGGCTTAGTACTGGAATTTGAATATGGGCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS CAA 72 bp | ATTCAAATTCCAGTACTAAGCCCGCTGGCAGGACGTTaGATGAGATGTTCCCAGAAGCACAAACTTGACCAG | + |
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Preference number: 6 (lower is better) Translates to: IQIPVLSPLAGR*MRCSQKHKLDQ Trigger: CTGGTCAAGTTTGTGCTTCTGGGAACATCTCATCAAACGTCCTGCCAGCGGGCTTAGTACTGGAATTTGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS TCA 72 bp | TTAAACACTCCAAAGTGTCCAGCCCGAGATAAAAGCTaGCAGCAACACAGCTGGTTGATGAAAAGAGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: LNTPKCPARDKS*QQHSWLMKREA Trigger: GGCTTCTCTTTTCATCAACCAGCTGTGTTGCTGTCAGCTTTTATCTCGGGCTGGACACTTTGGAGTGTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS CAA 72 bp | GGCTATGCAGGGGAAGACACAACAGCATCCCTAATATaGGAATCTCTCTCTAAGACCTACAGGAATGAACAC | + |
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Preference number: 6 (lower is better) Translates to: GYAGEDTTASLI*ESLSKTYRNEH Trigger: GTGTTCATTCCTGTAGGTCTTAGAGAGAGATTCCAATATTAGGGATGCTGTTGTGTCTTCCCCTGCATAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS TCA 72 bp | TGTATCTGTACAGGTGTCATCTCATTCTTAGTCACATaGTGGATAATCTCCAGGCTGGAAGGCTCAGGCAAT | + |
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Preference number: 6 (lower is better) Translates to: CICTGVISFLVT*WIISRLEGSGN Trigger: ATTGCCTGAGCCTTCCAGCCTGGAGATTATCCATCATGTGACTAAGAATGAGATGACACCTGTACAGATACA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS CAA 90 bp | ACATGGGCTATAACCAAGATTCCTAGTTCACATAAGGAAGGGTGTTaGACCAGGCCCCCATCTTATTGTCTTGAGCTTATATTCCATCTC | + |
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Preference number: 6 (lower is better) Translates to: TWAITKIPSSHKEGC*TRPPSYCLELIFHL Trigger: GAGATGGAATATAAGCTCAAGACAATAAGATGGGGGCCTGGTCAAACACCCTTCCTTATGTGAACTAGGAATCTTGGTTATAGCCCATGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS TCA 72 bp | GAATCTCTCTCTAAGACCTACAGGAATGAACACCCCTaGATATTGCCAGATATAGAGGCTTCCAATAGACCA | + |
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Preference number: 6 (lower is better) Translates to: ESLSKTYRNEHP*ILPDIEASNRP Trigger: TGGTCTATTGGAAGCCTCTATATCTGGCAATATTCAGGGGTGTTCATTCCTGTAGGTCTTAGAGAGAGATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS TCA 72 bp | GATTGGAATGACATCAGATGTGGTTTAAGACAAGCCTaGCTTCATCATAACTATTCTCTCCCTCACACCAAC | + |
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Preference number: 6 (lower is better) Translates to: DWNDIRCGLRQA*LHHNYSLPHTN Trigger: GTTGGTGTGAGGGAGAGAATAGTTATGATGAAGTCAGGCTTGTCTTAAACCACATCTGATGTCATTCCAATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS CCA 72 bp | TGTTTCACTGAAAAAGAAACTGGGATTCAGAGGAGTTaGACTGCTAGTCATGTCGCAGAGCAAATAGAAAGT | + |
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Preference number: 6 (lower is better) Translates to: CFTEKETGIQRS*TASHVAEQIES Trigger: ACTTTCTATTTGCTCTGCGACATGACTAGCAGTCCAACTCCTCTGAATCCCAGTTTCTTTTTCAGTGAAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS CAA 72 bp | ATAACCAAGATTCCTAGTTCACATAAGGAAGGGTGTTaGACCAGGCCCCCATCTTATTGTCTTGAGCTTATA | + |
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Preference number: 6 (lower is better) Translates to: ITKIPSSHKEGC*TRPPSYCLELI Trigger: TATAAGCTCAAGACAATAAGATGGGGGCCTGGTCAAACACCCTTCCTTATGTGAACTAGGAATCTTGGTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS CAA 90 bp | CAATCCTATTGCTCCCCTAAAAAGACTCCTACCTGTAACACACTCTaGCCTCTACTTCATAACTTCTTTCCCAAACATGTTCATGAGAGT | + |
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Preference number: 6 (lower is better) Translates to: QSYCSPKKTPTCNTL*PLLHNFFPKHVHES Trigger: ACTCTCATGAACATGTTTGGGAAAGAAGTTATGAAGTAGAGGCAAGAGTGTGTTACAGGTAGGAGTCTTTTTAGGGGAGCAATAGGATTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000435682.1 |
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| CDS TCA 72 bp | AAACATTGGCTATATATCAGAGAAGCTCAAGCAAGTTaGTGTGTGCTACACACACCCTTGGTAAAATATGTC | + |
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Preference number: 6 (lower is better) Translates to: KHWLYIREAQAS*CVLHTPLVKYV Trigger: GACATATTTTACCAAGGGTGTGTGTAGCACACATCAACTTGCTTGAGCTTCTCTGATATATAGCCAATGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS CAA 90 bp | TGTAAGGGACTGAGGACTCTTTACCTGAAATATAACTCTTTAGGATaGACTACCATCTCCCCAACTAAGATGCAGAAATCATACAAACTT | + |
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Preference number: 6 (lower is better) Translates to: CKGLRTLYLKYNSLG*TTISPTKMQKSYKL Trigger: AAGTTTGTATGATTTCTGCATCTTAGTTGGGGAGATGGTAGTCAATCCTAAAGAGTTATATTTCAGGTAAAGAGTCCTCAGTCCCTTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000435682.1 ENST00000668104.1 |
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| CDS CAA 72 bp | AAAACATTGGCTATATATCAGAGAAGCTCAAGCAAGTaGATGTGTGCTACACACACCCTTGGTAAAATATGT | + |
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Preference number: 6 (lower is better) Translates to: KTLAIYQRSSSK*MCATHTLGKIC Trigger: ACATATTTTACCAAGGGTGTGTGTAGCACACATCAACTTGCTTGAGCTTCTCTGATATATAGCCAATGTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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| CDS CAA 90 bp | GGGAACATTAAAACATTGGCTATATATCAGAGAAGCTCAAGCAAGTaGATGTGTGCTACACACACCCTTGGTAAAATATGTCTGAAATAT | + |
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Preference number: 6 (lower is better) Translates to: GNIKTLAIYQRSSSK*MCATHTLGKICLKY Trigger: ATATTTCAGACATATTTTACCAAGGGTGTGTGTAGCACACATCAACTTGCTTGAGCTTCTCTGATATATAGCCAATGTTTTAATGTTCCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000435682.1 ENST00000663972.1 ENST00000664721.1 ENST00000668104.1 |
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