Pregenerated sensors for LINC01821 (Homo sapiens)
Ensembl gene IDs: ENSG00000225539Ensembl transcript IDs: ENST00000419786.2, ENST00000438505.5, ENST00000450848.5, ENST00000650872.1, ENST00000653542.1, ENST00000653550.1, ENST00000654688.1, ENST00000655549.1, ENST00000656546.1, ENST00000659259.1, ENST00000659759.1, ENST00000660800.1, ENST00000661930.1, ENST00000668090.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCCACAATAGGCCATCTGTGGGCTGAGGAGCAAGGAGAGCCAGTCTaGGTTCCAAAACTGAAGAACTTGGAGTCTGCCCTCAAAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: PTIGHLWAEEQGEPV*VPKLKNLESALKGR Trigger: TCTTCCTTTGAGGGCAGACTCCAAGTTCTTCAGTTTTGGAACTCAGACTGGCTCTCCTTGCTCCTCAGCCCACAGATGGCCTATTGTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659259.1 |
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| CDS CCA 90 bp | CTCACTTCACAGTTCTGGAGGCTGAGAATTCCAAGATCTAGGTGCTaGCAGTTGGTGTCTGATGAGGGCTTTCTTGCAGTGTCCTCACAC | + |
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Preference number: 5 (lower is better) Translates to: LTSQFWRLRIPRSRC*QLVSDEGFLAVSSH Trigger: GTGTGAGGACACTGCAAGAAAGCCCTCATCAGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGTGAAGTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655549.1 |
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| CDS GCA 90 bp | CTTCTCACTTCACAGTTCTGGAGGCTGAGAATTCCAAGATCTAGGTaGTGGCAGTTGGTGTCTGATGAGGGCTTTCTTGCAGTGTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: LLTSQFWRLRIPRSR*WQLVSDEGFLAVSS Trigger: TGAGGACACTGCAAGAAAGCCCTCATCAGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGTGAAGTGAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655549.1 |
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| CDS CCA 90 bp | GTGTCTGATGAGGGCTTTCTTGCAGTGTCCTCACACAGTGGAAGGTaGAAGGCAGAACAGCAAAAAGGGAATGAATTCCTTCCAGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: VSDEGFLAVSSHSGR*KAEQQKGNEFLPAA Trigger: AGCTGCTGGAAGGAATTCATTCCCTTTTTGCTGTTCTGCCTTCCACCTTCCACTGTGTGAGGACACTGCAAGAAAGCCCTCATCAGACAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 12 transcripts: ENST00000419786.2 ENST00000650872.1 ENST00000653542.1 ENST00000653550.1 ENST00000654688.1 ENST00000655549.1 ENST00000656546.1 ENST00000659259.1 ENST00000659759.1 ENST00000660800.1 ENST00000661930.1 ENST00000668090.1 |
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| CDS TCA 90 bp | TCTACTCTACACCTTCTGGACTTCTCACTTCACAGTTCTGGAGGCTaGGAATTCCAAGATCTAGGTGCTGGCAGTTGGTGTCTGATGAGG | + |
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Preference number: 5 (lower is better) Translates to: STLHLLDFSLHSSGG*EFQDLGAGSWCLMR Trigger: CCTCATCAGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGTGAAGTGAGAAGTCCAGAAGGTGTAGAGTAGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655549.1 |
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| CDS TCA 90 bp | ATCTGTGGGCTGAGGAGCAAGGAGAGCCAGTCTGAGTTCCAAAACTaGAGAACTTGGAGTCTGCCCTCAAAGGAAGATTTCTTCTGTCTC | + |
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Preference number: 5 (lower is better) Translates to: ICGLRSKESQSEFQN*RTWSLPSKEDFFCL Trigger: GAGACAGAAGAAATCTTCCTTTGAGGGCAGACTCCAAGTTCTTCAGTTTTGGAACTCAGACTGGCTCTCCTTGCTCCTCAGCCCACAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659259.1 |
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| CDS TCA 90 bp | AGTGTATCAACGATCACAAGGTCCCACAATAGGCCATCTGTGGGCTaGGGAGCAAGGAGAGCCAGTCTGAGTTCCAAAACTGAAGAACTT | + |
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Preference number: 5 (lower is better) Translates to: SVSTITRSHNRPSVG*GARRASLSSKTEEL Trigger: AAGTTCTTCAGTTTTGGAACTCAGACTGGCTCTCCTTGCTCCTCAGCCCACAGATGGCCTATTGTGGGACCTTGTGATCGTTGATACACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659259.1 |
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| CDS CCA 90 bp | AGTGAGGTGACAGGCTACTGGATGAAAACACTGCAACCAGATGAATaGAAAAGTTGTGTTGCCAGGGAAACCTCTTCCAGGAGTTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: SEVTGYWMKTLQPDE*KSCVARETSSRSCV Trigger: CACACAACTCCTGGAAGAGGTTTCCCTGGCAACACAACTTTTCCATTCATCTGGTTGCAGTGTTTTCATCCAGTAGCCTGTCACCTCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000419786.2 ENST00000653550.1 ENST00000656546.1 ENST00000659259.1 ENST00000659759.1 ENST00000660800.1 ENST00000661930.1 |
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| CDS CCA 90 bp | TCTGTCTTCTACTCTACACCTTCTGGACTTCTCACTTCACAGTTCTaGAGGCTGAGAATTCCAAGATCTAGGTGCTGGCAGTTGGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: SVFYSTPSGLLTSQF*RLRIPRSRCWQLVS Trigger: AGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGTGAAGTGAGAAGTCCAGAAGGTGTAGAGTAGAAGACAGA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655549.1 |
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| CDS CCA 90 bp | TGTGGCTGGTACCAGTTTTTCTTTCCATATTTAGTGCTTCAGTTCTaGAGGCTGAGAATTCCAAGATCTAGGTGCTGGCAGTTGGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: CGWYQFFFPYLVLQF*RLRIPRSRCWQLVS Trigger: AGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGAAGCACTAAATATGGAAAGAAAAACTGGTACCAGCCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS CCA 90 bp | TTGGGGTATTCCAGGATTGTCTGTGGCTCTAGCAGTTTGAAGAGGTaGGAATTAAGTATGATGGTTCTTTGCACATACTCCCCTCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: LGYSRIVCGSSSLKR*ELSMMVLCTYSPPS Trigger: TGAAGGAGGGGAGTATGTGCAAAGAACCATCATACTTAATTCCCACCTCTTCAAACTGCTAGAGCCACAGACAATCCTGGAATACCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650872.1 |
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| CDS TCA 90 bp | GGAATGTATGTGATCTTCTTCAGTTATCCTTTGGGAAAAAGGACTTaGTGGACAAGATCAAGGACCACCACACAACCTGCCCTCAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: GMYVIFFSYPLGKRT*WTRSRTTTQPALKG Trigger: TCCTTTGAGGGCAGGTTGTGTGGTGGTCCTTGATCTTGTCCATCAAGTCCTTTTTCCCAAAGGATAACTGAAGAAGATCACATACATTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000661930.1 |
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| CDS CCA 90 bp | AACCGAATTGTCAGTGATTCTGGAGAGACATTTCGTAGATACAGCTaGAAACACTTCTTATTGATTGGTGTGAAGCATGGCGGAGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: NRIVSDSGETFRRYS*KHFLLIGVKHGGAA Trigger: TGCTGCTCCGCCATGCTTCACACCAATCAATAAGAAGTGTTTCCAGCTGTATCTACGAAATGTCTCTCCAGAATCACTGACAATTCGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659759.1 |
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| CDS TCA 90 bp | TATTTTATAGAAAAACAGAAACGTGTTTCTCACAGTTCTGGAGGCTaGGAATTCCAAGATCTAGGTGCTGGCAGTTGGTGTCTGATGAGG | + |
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Preference number: 5 (lower is better) Translates to: YFIEKQKRVSHSSGG*EFQDLGAGSWCLMR Trigger: CCTCATCAGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGTGAGAAACACGTTTCTGTTTTTCTATAAAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000419786.2 ENST00000653542.1 ENST00000653550.1 ENST00000656546.1 ENST00000659259.1 ENST00000660800.1 ENST00000661930.1 ENST00000668090.1 |
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| CDS TCA 90 bp | TTTTCTTTCCATTTGCTTGGCCAATATTTCTCCATCCCTTTATTTTaGGCCAATGTGTGTCTTTGCACATTAGATGGGTCTTCTGAACAC | + |
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Preference number: 5 (lower is better) Translates to: FSFHLLGQYFSIPLF*ANVCLCTLDGSSEH Trigger: GTGTTCAGAAGACCCATCTAATGTGCAAAGACACACATTGGCTCAAAATAAAGGGATGGAGAAATATTGGCCAAGCAAATGGAAAGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS CCA 90 bp | TTGAAGAGGAGCTCATCAGATGAATACCTATCAGACTCAATAAGTTaGAATGTATGTGATCTTCTTCAGTTATCCTTTGGGAAAAAGGAC | + |
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Preference number: 5 (lower is better) Translates to: LKRSSSDEYLSDSIS*NVCDLLQLSFGKKD Trigger: GTCCTTTTTCCCAAAGGATAACTGAAGAAGATCACATACATTCCAACTTATTGAGTCTGATAGGTATTCATCTGATGAGCTCCTCTTCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 10 transcripts: ENST00000419786.2 ENST00000438505.5 ENST00000450848.5 ENST00000650872.1 ENST00000653542.1 ENST00000653550.1 ENST00000654688.1 ENST00000655549.1 ENST00000659259.1 ENST00000661930.1 |
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| CDS GCA 90 bp | ATTATTGTGTGGGAGTCTAAGTCTATTTGTAGGTCTCTAAGAACTTaGTTTATAAATCTGGGTGCTCCTGTATTGGGCGCATATATATTT | + |
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Preference number: 5 (lower is better) Translates to: IIVWESKSICRSLRT*FINLGAPVLGAYIF Trigger: AAATATATATGCGCCCAATACAGGAGCACCCAGATTTATAAAGCAAGTTCTTAGAGACCTACAAATAGACTTAGACTCCCACACAATAAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS CCA 90 bp | TCTAATATTGACAGTGGGGTGTTAAAGTCTCCCACTATTATTGTGTaGGAGTCTAAGTCTATTTGTAGGTCTCTAAGAACTTGCTTTATA | + |
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Preference number: 5 (lower is better) Translates to: SNIDSGVLKSPTIIV*ESKSICRSLRTCFI Trigger: TATAAAGCAAGTTCTTAGAGACCTACAAATAGACTTAGACTCCCACACAATAATAGTGGGAGACTTTAACACCCCACTGTCAATATTAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS TCA 90 bp | AAGTTTGCAGATAGGTATACACTGAGTTGTTTCTCCTGTACTAAATaGTGGCACATCAACAGGAAAGTCAATATTCTGTACAAAGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: KFADRYTLSCFSCTK*WHINRKVNILYKVL Trigger: AAGAACTTTGTACAGAATATTGACTTTCCTGTTGATGTGCCATCATTTAGTACAGGAGAAACAACTCAGTGTATACCTATCTGCAAACTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659759.1 |
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| CDS TCA 72 bp | GGCCATCTGTGGGCTGAGGAGCAAGGAGAGCCAGTCTaGGTTCCAAAACTGAAGAACTTGGAGTCTGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: GHLWAEEQGEPV*VPKLKNLESAL Trigger: GAGGGCAGACTCCAAGTTCTTCAGTTTTGGAACTCAGACTGGCTCTCCTTGCTCCTCAGCCCACAGATGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659259.1 |
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| CDS CCA 72 bp | CAGTTCTGGAGGCTGAGAATTCCAAGATCTAGGTGCTaGCAGTTGGTGTCTGATGAGGGCTTTCTTGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: QFWRLRIPRSRC*QLVSDEGFLAV Trigger: CACTGCAAGAAAGCCCTCATCAGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 10 transcripts: ENST00000419786.2 ENST00000653542.1 ENST00000653550.1 ENST00000654688.1 ENST00000655549.1 ENST00000656546.1 ENST00000659259.1 ENST00000660800.1 ENST00000661930.1 ENST00000668090.1 |
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| CDS CCA 72 bp | GAGTTCTGGAGGCTGAGAATTCCAAGATCTAGGTGCTaGCAGTTGGTGTCTGATGAGGGCTTTCTTGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: EFWRLRIPRSRC*QLVSDEGFLAV Trigger: CACTGCAAGAAAGCCCTCATCAGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650872.1 |
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| CDS TCA 72 bp | CACCTTCTGGACTTCTCACTTCACAGTTCTGGAGGCTaGGAATTCCAAGATCTAGGTGCTGGCAGTTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: HLLDFSLHSSGG*EFQDLGAGSWC Trigger: ACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGTGAAGTGAGAAGTCCAGAAGGTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655549.1 |
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| CDS TCA 72 bp | AGACAGTTGCATGTGGCTGGAGAGTCCTCACAATCATaGTGGAAGGCAAGGCAGAGCAAGTCACGTCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: RQLHVAGESSQS*WKARQSKSRLF Trigger: AAACAGACGTGACTTGCTCTGCCTTGCCTTCCATCATGATTGTGAGGACTCTCCAGCCACATGCAACTGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650872.1 |
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| CDS TCA 72 bp | AGACAGTTGCATGTGGCTGGAGAGTCCTCACAATCATaGTGGAAGGCAAGGCAGAGCAAGTCACGTAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: RQLHVAGESSQS*WKARQSKSRSS Trigger: AGAACTACGTGACTTGCTCTGCCTTGCCTTCCATCATGATTGTGAGGACTCTCCAGCCACATGCAACTGTCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659759.1 |
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| CDS GCA 72 bp | TCACAGTTCTGGAGGCTGAGAATTCCAAGATCTAGGTaGTGGCAGTTGGTGTCTGATGAGGGCTTTCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: SQFWRLRIPRSR*WQLVSDEGFLA Trigger: TGCAAGAAAGCCCTCATCAGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000419786.2 ENST00000653542.1 ENST00000653550.1 ENST00000655549.1 ENST00000656546.1 ENST00000659259.1 ENST00000660800.1 ENST00000661930.1 ENST00000668090.1 |
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| CDS GCA 72 bp | CTTCAGTTCTGGAGGCTGAGAATTCCAAGATCTAGGTaGTGGCAGTTGGTGTCTGATGAGGGCTTTCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: LQFWRLRIPRSR*WQLVSDEGFLA Trigger: TGCAAGAAAGCCCTCATCAGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS GCA 72 bp | AAAGAGTTCTGGAGGCTGAGAATTCCAAGATCTAGGTaGTGGCAGTTGGTGTCTGATGAGGGCTTTCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: KEFWRLRIPRSR*WQLVSDEGFLA Trigger: TGCAAGAAAGCCCTCATCAGACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650872.1 |
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| CDS CCA 72 bp | GAGGGCTTTCTTGCAGTGTCCTCACACAGTGGAAGGTaGAAGGCAGAACAGCAAAAAGGGAATGAATTCCTT | + |
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Preference number: 6 (lower is better) Translates to: EGFLAVSSHSGR*KAEQQKGNEFL Trigger: AAGGAATTCATTCCCTTTTTGCTGTTCTGCCTTCCACCTTCCACTGTGTGAGGACACTGCAAGAAAGCCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 12 transcripts: ENST00000419786.2 ENST00000650872.1 ENST00000653542.1 ENST00000653550.1 ENST00000654688.1 ENST00000655549.1 ENST00000656546.1 ENST00000659259.1 ENST00000659759.1 ENST00000660800.1 ENST00000661930.1 ENST00000668090.1 |
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| CDS CCA 72 bp | TACTCTACACCTTCTGGACTTCTCACTTCACAGTTCTaGAGGCTGAGAATTCCAAGATCTAGGTGCTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: YSTPSGLLTSQF*RLRIPRSRCWQ Trigger: CTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGTGAAGTGAGAAGTCCAGAAGGTGTAGAGTA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655549.1 |
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| CDS TCA 72 bp | AGCCAATGTGTGTCTTTGCACATTAGATGGGTCTTCTaGACACAGCACACTGGTGGGAGTTGCCTCTTTATC | + |
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Preference number: 6 (lower is better) Translates to: SQCVSLHIRWVF*TQHTGGSCLFI Trigger: GATAAAGAGGCAACTCCCACCAGTGTGCTGTGTTCAGAAGACCCATCTAATGTGCAAAGACACACATTGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS CCA 72 bp | CCATTTCATTTTGAAAATGTACCGGCTGGACTACCGTaGCTGGTAGCCATCTCTGTCTTCTACTCTACACCT | + |
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Preference number: 6 (lower is better) Translates to: PFHFENVPAGLP*LVAISVFYSTP Trigger: AGGTGTAGAGTAGAAGACAGAGATGGCTACCAGCCACGGTAGTCCAGCCGGTACATTTTCAAAATGAAATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655549.1 |
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| CDS TCA 72 bp | GAAAAACAGAAACGTGTTTCTCACAGTTCTGGAGGCTaGGAATTCCAAGATCTAGGTGCTGGCAGTTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: EKQKRVSHSSGG*EFQDLGAGSWC Trigger: ACACCAACTGCCAGCACCTAGATCTTGGAATTCTCAGCCTCCAGAACTGTGAGAAACACGTTTCTGTTTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 8 transcripts: ENST00000419786.2 ENST00000653542.1 ENST00000653550.1 ENST00000656546.1 ENST00000659259.1 ENST00000660800.1 ENST00000661930.1 ENST00000668090.1 |
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| CDS CAA 90 bp | TGGAATGTATGTGATCTTCTTCAGTTATCCTTTGGGAAAAAGGACTaGATGGACAAGATCAAGGACCACCACACAACCTGCCCTCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: WNVCDLLQLSFGKKD*MDKIKDHHTTCPQR Trigger: CCTTTGAGGGCAGGTTGTGTGGTGGTCCTTGATCTTGTCCATCAAGTCCTTTTTCCCAAAGGATAACTGAAGAAGATCACATACATTCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000661930.1 |
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| CDS CAA 90 bp | GATTCTGGAGAGACATTTCGTAGATACAGCTGGAAACACTTCTTATaGATTGGTGTGAAGCATGGCGGAGCAGCAGCATGGAATCCTTAT | + |
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Preference number: 6 (lower is better) Translates to: DSGETFRRYSWKHFL*IGVKHGGAAAWNPY Trigger: ATAAGGATTCCATGCTGCTGCTCCGCCATGCTTCACACCAATCAATAAGAAGTGTTTCCAGCTGTATCTACGAAATGTCTCTCCAGAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659759.1 |
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| CDS CCA 72 bp | GTCAGTGATTCTGGAGAGACATTTCGTAGATACAGCTaGAAACACTTCTTATTGATTGGTGTGAAGCATGGC | + |
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Preference number: 6 (lower is better) Translates to: VSDSGETFRRYS*KHFLLIGVKHG Trigger: GCCATGCTTCACACCAATCAATAAGAAGTGTTTCCAGCTGTATCTACGAAATGTCTCTCCAGAATCACTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659759.1 |
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| CDS CCA 72 bp | GACAGTGGGGTGTTAAAGTCTCCCACTATTATTGTGTaGGAGTCTAAGTCTATTTGTAGGTCTCTAAGAACT | + |
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Preference number: 6 (lower is better) Translates to: DSGVLKSPTIIV*ESKSICRSLRT Trigger: AGTTCTTAGAGACCTACAAATAGACTTAGACTCCCACACAATAATAGTGGGAGACTTTAACACCCCACTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS CAA 72 bp | CATAAATACTTCTGGTTTGTATATACCTCCTCTCTTTaGGGGTATTCCAGGATTGTCTGTGGCTCTAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: HKYFWFVYTSSL*GYSRIVCGSSS Trigger: ACTGCTAGAGCCACAGACAATCCTGGAATACCCCAAAAGAGAGGAGGTATATACAAACCAGAAGTATTTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650872.1 |
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| CDS CAA 90 bp | ACCATAAATCATAAATACTTCTGGTTTGTATATACCTCCTCTCTTTaGGGGTATTCCAGGATTGTCTGTGGCTCTAGCAGTTTGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: TINHKYFWFVYTSSL*GYSRIVCGSSSLKR Trigger: CCTCTTCAAACTGCTAGAGCCACAGACAATCCTGGAATACCCCAAAAGAGAGGAGGTATATACAAACCAGAAGTATTTATGATTTATGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650872.1 |
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| CDS TCA 72 bp | CATTTGCTTGGCCAATATTTCTCCATCCCTTTATTTTaGGCCAATGTGTGTCTTTGCACATTAGATGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: HLLGQYFSIPLF*ANVCLCTLDGS Trigger: AGACCCATCTAATGTGCAAAGACACACATTGGCTCAAAATAAAGGGATGGAGAAATATTGGCCAAGCAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS TCA 72 bp | ATTAGGTCTGCTTGGTCCAGAGCTGAGTTCAAGCCCTaGATATCCTTGTTAATTTTCTGTCTCATTGATCTA | + |
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Preference number: 6 (lower is better) Translates to: IRSAWSRAEFKP*ISLLIFCLIDL Trigger: TAGATCAATGAGACAGAAAATTAACAAGGATATTCAGGGCTTGAACTCAGCTCTGGACCAAGCAGACCTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS TCA 72 bp | GCATTTCAATCCTCAGTTGAAGAGGAGCTCATCAGATaGATACCTATCAGACTCAATAAGTTGGAATGTATG | + |
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Preference number: 6 (lower is better) Translates to: AFQSSVEEELIR*IPIRLNKLECM Trigger: CATACATTCCAACTTATTGAGTCTGATAGGTATTCATCTGATGAGCTCCTCTTCAACTGAGGATTGAAATGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 10 transcripts: ENST00000419786.2 ENST00000438505.5 ENST00000450848.5 ENST00000650872.1 ENST00000653542.1 ENST00000653550.1 ENST00000654688.1 ENST00000655549.1 ENST00000659259.1 ENST00000661930.1 |
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| CDS CAA 90 bp | TGTAGGTCTCTAAGAACTTGCTTTATAAATCTGGGTGCTCCTGTATaGGGCGCATATATATTTATGATAGTAGGCTCATCTTGTTGCATT | + |
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Preference number: 6 (lower is better) Translates to: CRSLRTCFINLGAPV*GAYIFMIVGSSCCI Trigger: AATGCAACAAGATGAGCCTACTATCATAAATATATATGCGCCCAATACAGGAGCACCCAGATTTATAAAGCAAGTTCTTAGAGACCTACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS TCA 72 bp | GATAGGTATACACTGAGTTGTTTCTCCTGTACTAAATaGTGGCACATCAACAGGAAAGTCAATATTCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: DRYTLSCFSCTK*WHINRKVNILY Trigger: GTACAGAATATTGACTTTCCTGTTGATGTGCCATCATTTAGTACAGGAGAAACAACTCAGTGTATACCTATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659759.1 |
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| CDS CCA 72 bp | AGCTCATCAGATGAATACCTATCAGACTCAATAAGTTaGAATGTATGTGATCTTCTTCAGTTATCCTTTGGG | + |
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Preference number: 6 (lower is better) Translates to: SSSDEYLSDSIS*NVCDLLQLSFG Trigger: CCCAAAGGATAACTGAAGAAGATCACATACATTCCAACTTATTGAGTCTGATAGGTATTCATCTGATGAGCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 10 transcripts: ENST00000419786.2 ENST00000438505.5 ENST00000450848.5 ENST00000650872.1 ENST00000653542.1 ENST00000653550.1 ENST00000654688.1 ENST00000655549.1 ENST00000659259.1 ENST00000661930.1 |
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| CDS CCA 72 bp | CAAAGTTCTTCAATTTATTCTTTAAGTCTGGAGGGATaGCAAATGTACAGGAACAATTATAAAGGAGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: QSSSIYSLSLEG*QMYRNNYKGGS Trigger: GGAGCCTCCTTTATAATTGTTCCTGTACATTTGCCATCCCTCCAGACTTAAAGAATAAATTGAAGAACTTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659759.1 |
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| CDS CAA 72 bp | CTAAGAACTTGCTTTATAAATCTGGGTGCTCCTGTATaGGGCGCATATATATTTATGATAGTAGGCTCATCT | + |
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Preference number: 6 (lower is better) Translates to: LRTCFINLGAPV*GAYIFMIVGSS Trigger: AGATGAGCCTACTATCATAAATATATATGCGCCCAATACAGGAGCACCCAGATTTATAAAGCAAGTTCTTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654688.1 |
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| CDS CAA 90 bp | CACAACCTAGTTGACAACCAATATCCTCATTTTATATTGATAAGTTaGCCATCACTAAGTTCCTCTGGCATCATGGTGTCAAAGTCAATA | + |
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Preference number: 6 (lower is better) Translates to: HNLVDNQYPHFILIS*PSLSSSGIMVSKSI Trigger: TATTGACTTTGACACCATGATGCCAGAGGAACTTAGTGATGGCAAACTTATCAATATAAAATGAGGATATTGGTTGTCAACTAGGTTGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENST00000419786.2 ENST00000438505.5 ENST00000450848.5 ENST00000650872.1 ENST00000653542.1 ENST00000653550.1 ENST00000654688.1 ENST00000655549.1 ENST00000659259.1 |
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| CDS CAA 90 bp | TCAATCCTAGTTGACAACCAATATCCTCATTTTATATTGATAAGTTaGCCATCACTAAGTTCCTCTGGCATCATGGTGTCAAAGTCAATA | + |
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Preference number: 6 (lower is better) Translates to: SILVDNQYPHFILIS*PSLSSSGIMVSKSI Trigger: TATTGACTTTGACACCATGATGCCAGAGGAACTTAGTGATGGCAAACTTATCAATATAAAATGAGGATATTGGTTGTCAACTAGGATTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656546.1 ENST00000659759.1 ENST00000668090.1 |
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