Pregenerated sensors for LINC01820 (Homo sapiens)
Ensembl gene IDs: ENSG00000228100Ensembl transcript IDs: ENST00000418415.2, ENST00000654557.1, ENST00000665509.1, ENST00000669411.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGGCAGGGTGCTGACCTCTTCTGTAGCTGGAAGGGAGATCCAGCATaGTCCCCAGGCATGGGCAGAGCTTTCTGGCCCTCCTCTTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: GQGADLFCSWKGDPA*SPGMGRAFWPSSCP Trigger: AGGACAAGAGGAGGGCCAGAAAGCTCTGCCCATGCCTGGGGAGCATGCTGGATCTCCCTTCCAGCTACAGAAGAGGTCAGCACCCTGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS CCA 90 bp | ACCTCTTCTGTAGCTGGAAGGGAGATCCAGCATGCTCCCCAGGCATaGGCAGAGCTTTCTGGCCCTCCTCTTGTCCTGCAGCACCTAGGG | + |
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Preference number: 5 (lower is better) Translates to: TSSVAGREIQHAPQA*AELSGPPLVLQHLG Trigger: CCCTAGGTGCTGCAGGACAAGAGGAGGGCCAGAAAGCTCTGCCCATGCCTGGGGAGCATGCTGGATCTCCCTTCCAGCTACAGAAGAGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418415.2 ENST00000669411.1 |
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| CDS TCA 90 bp | AGGGAAGCGGATGTGCAGAACTCTCCCAGGACAAGGGCCACGTGGTaGCTGATGACCTGGAAGGCTTGGTCTGCAGTGGTGACCGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: READVQNSPRTRATW*LMTWKAWSAVVTEE Trigger: TTCCTCGGTCACCACTGCAGACCAAGCCTTCCAGGTCATCAGTCACCACGTGGCCCTTGTCCTGGGAGAGTTCTGCACATCCGCTTCCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS CCA 90 bp | TGGAAGGGAGATCCAGCATGCTCCCCAGGCATGGGCAGAGCTTTCTaGCCCTCCTCTTGTCCTGCAGCACCTAGGGACCAACATACATGC | + |
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Preference number: 5 (lower is better) Translates to: WKGDPACSPGMGRAF*PSSCPAAPRDQHTC Trigger: GCATGTATGTTGGTCCCTAGGTGCTGCAGGACAAGAGGAGGGCCAGAAAGCTCTGCCCATGCCTGGGGAGCATGCTGGATCTCCCTTCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418415.2 ENST00000669411.1 |
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| CDS CCA 90 bp | ACCTCTTCTGTAGCTGGAAGGGAGATCCAGCATGCTCCCCAGGCATaGGCAGAGCTTTCTGGCCCTCCTCTTGTCCTGCAGCACATGGGT | + |
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Preference number: 5 (lower is better) Translates to: TSSVAGREIQHAPQA*AELSGPPLVLQHMG Trigger: ACCCATGTGCTGCAGGACAAGAGGAGGGCCAGAAAGCTCTGCCCATGCCTGGGGAGCATGCTGGATCTCCCTTCCAGCTACAGAAGAGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665509.1 |
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| CDS GCA 90 bp | ATGCTCCCCAGGCATGGGCAGAGCTTTCTGGCCCTCCTCTTGTCCTaGAGCACATGGGTGAAGGATGAAATTCCAGGCATCACAGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: MLPRHGQSFLALLLS*STWVKDEIPGITAG Trigger: GCCTGCTGTGATGCCTGGAATTTCATCCTTCACCCATGTGCTGCAGGACAAGAGGAGGGCCAGAAAGCTCTGCCCATGCCTGGGGAGCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665509.1 |
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| CDS TCA 90 bp | CAGAGAACAGCTCATTGCTTGCCAGAAGGCAGGGGTGAGGAGAGATaGGGGCGTTCTCTGGAGTATTGGAACTGTTGCTTGTACTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: QRTAHCLPEGRGEER*GRSLEYWNCCLYCL Trigger: CAGACAGTACAAGCAACAGTTCCAATACTCCAGAGAACGCCCTCATCTCTCCTCACCCCTGCCTTCTGGCAAGCAATGAGCTGTTCTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000418415.2 ENST00000654557.1 ENST00000665509.1 ENST00000669411.1 |
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| CDS CCA 90 bp | AGCTCCCTCCATCTCTGTCCTGATCTTGGCTTTAAACTATGTGGGTaGGCCCAGCAATGGGTGAAGGATGAAATTCCAGGCATCACAGCA | + |
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Preference number: 5 (lower is better) Translates to: SSLHLCPDLGFKLCG*AQQWVKDEIPGITA Trigger: TGCTGTGATGCCTGGAATTTCATCCTTCACCCATTGCTGGGCCCACCCACATAGTTTAAAGCCAAGATCAGGACAGAGATGGAGGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000418415.2 ENST00000654557.1 ENST00000669411.1 |
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| CDS CCA 90 bp | GTGGGTTTGTGTTTGTTTGTTGATTTCCAACAGCAGGTATCAGGGTaGCCAGGGGACAGCTCCCTCCATCTCTGTCCTGATCTTGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: VGLCLFVDFQQQVSG*PGDSSLHLCPDLGF Trigger: AAAGCCAAGATCAGGACAGAGATGGAGGGAGCTGTCCCCTGGCCACCCTGATACCTGCTGTTGGAAATCAACAAACAAACACAAACCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000418415.2 ENST00000654557.1 ENST00000669411.1 |
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| CDS CCA 90 bp | CAGCACCTAGGGACCAACATACATGCACACTCACAGAACGCAAAGTaGGTTTGTGTTTGTTTGTTGATTTCCAACAGCAGGTATCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: QHLGTNIHAHSQNAK*VCVCLLISNSRYQG Trigger: ACCCTGATACCTGCTGTTGGAAATCAACAAACAAACACAAACCCACTTTGCGTTCTGTGAGTGTGCATGTATGTTGGTCCCTAGGTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418415.2 ENST00000669411.1 |
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| CDS GCA 72 bp | GCTGACCTCTTCTGTAGCTGGAAGGGAGATCCAGCATaGTCCCCAGGCATGGGCAGAGCTTTCTGGCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: ADLFCSWKGDPA*SPGMGRAFWPS Trigger: GGAGGGCCAGAAAGCTCTGCCCATGCCTGGGGAGCATGCTGGATCTCCCTTCCAGCTACAGAAGAGGTCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS CCA 72 bp | GATCCAGCATGCTCCCCAGGCATGGGCAGAGCTTTCTaGCCCTCCTCTTGTCCTGCAGCACCTAGGGACCAA | + |
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Preference number: 6 (lower is better) Translates to: DPACSPGMGRAF*PSSCPAAPRDQ Trigger: TTGGTCCCTAGGTGCTGCAGGACAAGAGGAGGGCCAGAAAGCTCTGCCCATGCCTGGGGAGCATGCTGGATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418415.2 ENST00000669411.1 |
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| CDS CCA 72 bp | GTAGCTGGAAGGGAGATCCAGCATGCTCCCCAGGCATaGGCAGAGCTTTCTGGCCCTCCTCTTGTCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: VAGREIQHAPQA*AELSGPPLVLQ Trigger: CTGCAGGACAAGAGGAGGGCCAGAAAGCTCTGCCCATGCCTGGGGAGCATGCTGGATCTCCCTTCCAGCTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000418415.2 ENST00000665509.1 ENST00000669411.1 |
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| CDS GCA 72 bp | GAGGGAGAAATGAGTAACCCCTCTACGTCCAGGCCCTaGCTGACACCTGCCTGTAGGCGACAGAAACCAGCC | + |
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Preference number: 6 (lower is better) Translates to: EGEMSNPSTSRP*LTPACRRQKPA Trigger: GGCTGGTTTCTGTCGCCTACAGGCAGGTGTCAGGCAGGGCCTGGACGTAGAGGGGTTACTCATTTCTCCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS TCA 72 bp | GATGTGCAGAACTCTCCCAGGACAAGGGCCACGTGGTaGCTGATGACCTGGAAGGCTTGGTCTGCAGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: DVQNSPRTRATW*LMTWKAWSAVV Trigger: CACCACTGCAGACCAAGCCTTCCAGGTCATCAGTCACCACGTGGCCCTTGTCCTGGGAGAGTTCTGCACATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS GCA 72 bp | ATAGACCTCTTCTGTAGCTGGAAGGGAGATCCAGCATaGTCCCCAGGCATGGGCAGAGCTTTCTGGCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: IDLFCSWKGDPA*SPGMGRAFWPS Trigger: GGAGGGCCAGAAAGCTCTGCCCATGCCTGGGGAGCATGCTGGATCTCCCTTCCAGCTACAGAAGAGGTCTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418415.2 ENST00000665509.1 |
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| CDS TCA 72 bp | GGCCCTCCTCTTGTCCTGCAGCACATGGGTGAAGGATaGAATTCCAGGCATCACAGCAGGCTAGCAAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: GPPLVLQHMGEG*NSRHHSRLAKG Trigger: GCCTTTTGCTAGCCTGCTGTGATGCCTGGAATTTCATCCTTCACCCATGTGCTGCAGGACAAGAGGAGGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665509.1 |
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| CDS GCA 72 bp | AGGCATGGGCAGAGCTTTCTGGCCCTCCTCTTGTCCTaGAGCACATGGGTGAAGGATGAAATTCCAGGCATC | + |
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Preference number: 6 (lower is better) Translates to: RHGQSFLALLLS*STWVKDEIPGI Trigger: GATGCCTGGAATTTCATCCTTCACCCATGTGCTGCAGGACAAGAGGAGGGCCAGAAAGCTCTGCCCATGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665509.1 |
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| CDS GCA 72 bp | GGTGACCGAGGAAGACAATTAGGAGGGACAGCATGTTaGCAAGAGGTCTCTCAGAGGTTCGAGCAAGACCGC | + |
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Preference number: 6 (lower is better) Translates to: GDRGRQLGGTAC*QEVSQRFEQDR Trigger: GCGGTCTTGCTCGAACCTCTGAGAGACCTCTTGGCAACATGCTGTCCCTCCTAATTGTCTTCCTCGGTCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS CCA 72 bp | AGTTGGGGAGCCAGGATGTTGTCAGAGTGGTCCAGGTaGGTGTCAGCGTCCGTGAAAGTAAAGGTGGATGGA | + |
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Preference number: 6 (lower is better) Translates to: SWGARMLSEWSR*VSASVKVKVDG Trigger: TCCATCCACCTTTACTTTCACGGACGCTGACACCCACCTGGACCACTCTGACAACATCCTGGCTCCCCAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS CAA 72 bp | GACAAGGGCCACGTGGTGACTGATGACCTGGAAGGCTaGGTCTGCAGTGGTGACCGAGGAAGACAATTAGGA | + |
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Preference number: 6 (lower is better) Translates to: DKGHVVTDDLEG*VCSGDRGRQLG Trigger: TCCTAATTGTCTTCCTCGGTCACCACTGCAGACCAAGCCTTCCAGGTCATCAGTCACCACGTGGCCCTTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS CCA 72 bp | GCATATTCTAAGCAGGAGGAGGTGGACGGGGTCTTCTaGGTATTCCTCAAGTCACTCCAGGTAGACCCATCC | + |
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Preference number: 6 (lower is better) Translates to: AYSKQEEVDGVF*VFLKSLQVDPS Trigger: GGATGGGTCTACCTGGAGTGACTTGAGGAATACCCAGAAGACCCCGTCCACCTCCTCCTGCTTAGAATATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000418415.2 ENST00000654557.1 ENST00000665509.1 ENST00000669411.1 |
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| CDS CAA 90 bp | ATCTCAGAGGTGGCTGAAATCAAAGAAGGCAAGGGTCTGATGAAGTaGGGGAGCCAGGATGTTGTCAGAGTGGTCCAGGTGGGTGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: ISEVAEIKEGKGLMK*GSQDVVRVVQVGVS Trigger: GCTGACACCCACCTGGACCACTCTGACAACATCCTGGCTCCCCAACTTCATCAGACCCTTGCCTTCTTTGATTTCAGCCACCTCTGAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS CAA 72 bp | GTGGCTGAAATCAAAGAAGGCAAGGGTCTGATGAAGTaGGGGAGCCAGGATGTTGTCAGAGTGGTCCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: VAEIKEGKGLMK*GSQDVVRVVQV Trigger: CACCTGGACCACTCTGACAACATCCTGGCTCCCCAACTTCATCAGACCCTTGCCTTCTTTGATTTCAGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669411.1 |
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| CDS CCA 72 bp | TGTTTGTTTGTTGATTTCCAACAGCAGGTATCAGGGTaGCCAGGGGACAGCTCCCTCCATCTCTGTCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: CLFVDFQQQVSG*PGDSSLHLCPD Trigger: ATCAGGACAGAGATGGAGGGAGCTGTCCCCTGGCCACCCTGATACCTGCTGTTGGAAATCAACAAACAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000418415.2 ENST00000654557.1 ENST00000669411.1 |
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| CDS CCA 72 bp | CATCTCTGTCCTGATCTTGGCTTTAAACTATGTGGGTaGGCCCAGCAATGGGTGAAGGATGAAATTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: HLCPDLGFKLCG*AQQWVKDEIPG Trigger: GCCTGGAATTTCATCCTTCACCCATTGCTGGGCCCACCCACATAGTTTAAAGCCAAGATCAGGACAGAGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000418415.2 ENST00000654557.1 ENST00000669411.1 |
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| CDS CAA 72 bp | CACTCACAGAACGCAAAGTGGGTTTGTGTTTGTTTGTaGATTTCCAACAGCAGGTATCAGGGTGGCCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: HSQNAKWVCVCL*ISNSRYQGGQG Trigger: CCCCTGGCCACCCTGATACCTGCTGTTGGAAATCAACAAACAAACACAAACCCACTTTGCGTTCTGTGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418415.2 ENST00000669411.1 |
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| CDS CAA 90 bp | GACCAACATACATGCACACTCACAGAACGCAAAGTGGGTTTGTGTTaGTTTGTTGATTTCCAACAGCAGGTATCAGGGTGGCCAGGGGAC | + |
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Preference number: 6 (lower is better) Translates to: DQHTCTLTERKVGLC*FVDFQQQVSGWPGD Trigger: GTCCCCTGGCCACCCTGATACCTGCTGTTGGAAATCAACAAACAAACACAAACCCACTTTGCGTTCTGTGAGTGTGCATGTATGTTGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418415.2 ENST00000669411.1 |
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| CDS CAA 72 bp | CATAGACAGAACGCAAAGTGGGTTTGTGTTTGTTTGTaGATTTCCAACAGCAGGTATCAGGGTGGCCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: HRQNAKWVCVCL*ISNSRYQGGQG Trigger: CCCCTGGCCACCCTGATACCTGCTGTTGGAAATCAACAAACAAACACAAACCCACTTTGCGTTCTGTCTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654557.1 |
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| CDS CAA 72 bp | ACATGCACACTCACAGAACGCAAAGTGGGTTTGTGTTaGTTTGTTGATTTCCAACAGCAGGTATCAGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: TCTLTERKVGLC*FVDFQQQVSGW Trigger: CCACCCTGATACCTGCTGTTGGAAATCAACAAACAAACACAAACCCACTTTGCGTTCTGTGAGTGTGCATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418415.2 ENST00000669411.1 |
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