Pregenerated sensors for LINC01818 (Homo sapiens)
Ensembl gene IDs: ENSG00000230645Ensembl transcript IDs: ENST00000437118.1, ENST00000659082.1, ENST00000665690.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGCTTGGGCTCCAAGGTGGGTATCTTGGCTCTCCTCCAGACTTTCTaGCTCAGTAGGTCTGCAGCAGAGGGCCACAGCATTTGCTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: SLGSKVGILALLQTF*LSRSAAEGHSICFS Trigger: TGAAAAGCAAATGCTGTGGCCCTCTGCTGCAGACCTACTGAGTCAGAAAGTCTGGAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS CCA 90 bp | ACACATCGAAAATACCCCTCAGCTTGGGCTCCAAGGTGGGTATCTTaGCTCTCCTCCAGACTTTCTGACTCAGTAGGTCTGCAGCAGAGG | + |
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Preference number: 5 (lower is better) Translates to: THRKYPSAWAPRWVS*LSSRLSDSVGLQQR Trigger: CCTCTGCTGCAGACCTACTGAGTCAGAAAGTCTGGAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTTTCGATGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS CCA 90 bp | GCAGGACTGGTTCCACAAGATACACATCGAAAATACCCCTCAGCTTaGGCTCCAAGGTGGGTATCTTGGCTCTCCTCCAGACTTTCTGAC | + |
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Preference number: 5 (lower is better) Translates to: AGLVPQDTHRKYPSA*APRWVSWLSSRLSD Trigger: GTCAGAAAGTCTGGAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTTTCGATGTGTATCTTGTGGAACCAGTCCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS CCA 90 bp | CCACAAGATACACATCGAAAATACCCCTCAGCTTGGGCTCCAAGGTaGGTATCTTGGCTCTCCTCCAGACTTTCTGACTCAGTAGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: PQDTHRKYPSAWAPR*VSWLSSRLSDSVGL Trigger: CAGACCTACTGAGTCAGAAAGTCTGGAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTTTCGATGTGTATCTTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS CCA 90 bp | GCAGGACTGGTTCCACAAGATACACATCGAAAATACCCCTCAGCTTaGGCTCCAAGGTGGGTATCTTGGCTCTCCTTCATTAACTGTTAT | + |
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Preference number: 5 (lower is better) Translates to: AGLVPQDTHRKYPSA*APRWVSWLSFINCY Trigger: ATAACAGTTAATGAAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTTTCGATGTGTATCTTGTGGAACCAGTCCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000665690.1 |
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| CDS TCA 90 bp | ACTAATGATGAATTTGCTAAATTCTTTCTTTCTCTAGCCAAGGAGTaGGAAAGAAGCAGGACTGGTATACACCTAGGGCCATTTCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: TNDEFAKFFLSLAKE*ERSRTGIHLGPFPW Trigger: CCAAGGAAATGGCCCTAGGTGTATACCAGTCCTGCTTCTTTCTCACTCCTTGGCTAGAGAAAGAAAGAATTTAGCAAATTCATCATTAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659082.1 ENST00000665690.1 |
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| CDS GCA 90 bp | AGACAGTTTGAGAACCTCTGTCCTCGAATATCACACTGCTTCTCATaGAACTGTGAAGTGAATAAAACTTCATTAACTGTTATGGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: RQFENLCPRISHCFS*NCEVNKTSLTVMEP Trigger: GGGCTCCATAACAGTTAATGAAGTTTTATTCACTTCACAGTTGCATGAGAAGCAGTGTGATATTCGAGGACAGAGGTTCTCAAACTGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS GCA 90 bp | AGTCTGGGAAGACAGTTTGAGAACCTCTGTCCTCGAATATCACACTaGTTCTCATGCAACTGTGAAGTGAATAAAACTTCATTAACTGTT | + |
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Preference number: 5 (lower is better) Translates to: SLGRQFENLCPRISH*FSCNCEVNKTSLTV Trigger: AACAGTTAATGAAGTTTTATTCACTTCACAGTTGCATGAGAAGCAGTGTGATATTCGAGGACAGAGGTTCTCAAACTGTCTTCCCAGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS TCA 90 bp | AAGACACAGGATGCTCACAATAATCTCTTCAGTTTAACATTGCTCTaGGGACCTTCATTAACTGTTATGGAGCCCTTCATAAAGCAATGT | + |
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Preference number: 5 (lower is better) Translates to: KTQDAHNNLFSLTLL*GPSLTVMEPFIKQC Trigger: ACATTGCTTTATGAAGGGCTCCATAACAGTTAATGAAGGTCCTCAGAGCAATGTTAAACTGAAGAGATTATTGTGAGCATCCTGTGTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437118.1 |
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| CDS TCA 72 bp | CGGTGCCTCAGCCTCGGCGCCCATTCTGGCGGCGCCTaGGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: RCLSLGAHSGGA*GALQPAAALWE Trigger: CTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAGGCGCCGCCAGAATGGGCGCCGAGGCTGAGGCACCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437118.1 |
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| CDS GCA 72 bp | TTCTGGCGGCGCCTGAGGAGCCCTTCAGCCCGCCGCTaGACTGTGGGAGCCCTTTTCTGGGCTGGTCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: FWRRLRSPSARR*TVGALFWAGQG Trigger: GCCTTGACCAGCCCAGAAAAGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAGGCGCCGCCAGAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437118.1 |
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| CDS CCA 72 bp | AAATACCCCTCAGCTTGGGCTCCAAGGTGGGTATCTTaGCTCTCCTCCAGACTTTCTGACTCAGTAGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: KYPSAWAPRWVS*LSSRLSDSVGL Trigger: CAGACCTACTGAGTCAGAAAGTCTGGAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS CAA 72 bp | GGTTCCACAAGATACACATCGAAAATACCCCTCAGCTaGGGCTCCAAGGTGGGTATCTTGGCTCTCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: GSTRYTSKIPLS*GSKVGILALLQ Trigger: CTGGAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTTTCGATGTGTATCTTGTGGAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS CCA 72 bp | ACACATCGAAAATACCCCTCAGCTTGGGCTCCAAGGTaGGTATCTTGGCTCTCCTCCAGACTTTCTGACTCA | + |
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Preference number: 6 (lower is better) Translates to: THRKYPSAWAPR*VSWLSSRLSDS Trigger: TGAGTCAGAAAGTCTGGAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTTTCGATGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS CCA 72 bp | GTTCCACAAGATACACATCGAAAATACCCCTCAGCTTaGGCTCCAAGGTGGGTATCTTGGCTCTCCTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: VPQDTHRKYPSA*APRWVSWLSSR Trigger: TCTGGAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTTTCGATGTGTATCTTGTGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS CAA 72 bp | GGTTCCACAAGATACACATCGAAAATACCCCTCAGCTaGGGCTCCAAGGTGGGTATCTTGGCTCTCCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: GSTRYTSKIPLS*GSKVGILALLH Trigger: ATGAAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTTTCGATGTGTATCTTGTGGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000665690.1 |
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| CDS CCA 72 bp | GTTCCACAAGATACACATCGAAAATACCCCTCAGCTTaGGCTCCAAGGTGGGTATCTTGGCTCTCCTTCATT | + |
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Preference number: 6 (lower is better) Translates to: VPQDTHRKYPSA*APRWVSWLSFI Trigger: AATGAAGGAGAGCCAAGATACCCACCTTGGAGCCCAAGCTGAGGGGTATTTTCGATGTGTATCTTGTGGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000665690.1 |
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| CDS CAA 72 bp | TTTGGGGCAGGGGTAGTGACTGCTTGTCAGAGTGATTaGAACCAGAGCACCTCCATCTTGAATAGGTGTTGT | + |
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Preference number: 6 (lower is better) Translates to: FGAGVVTACQSD*NQSTSILNRCC Trigger: ACAACACCTATTCAAGATGGAGGTGCTCTGGTTCAAATCACTCTGACAAGCAGTCACTACCCCTGCCCCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000659082.1 ENST00000665690.1 |
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| CDS CAA 72 bp | CTGATGCTGCTGATGCTGCTAGTCTGGGAAGACAGTTaGAGAACCTCTGTCCTCGAATATCACACTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: LMLLMLLVWEDS*RTSVLEYHTAS Trigger: AGAAGCAGTGTGATATTCGAGGACAGAGGTTCTCAAACTGTCTTCCCAGACTAGCAGCATCAGCAGCATCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS TCA 72 bp | ATGACAGTCTCCCTCATTCCCTACTCATTGTCTCACTaGTTCAACAAACAACCACCCCACTCATTTTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: MTVSLIPYSLSH*FNKQPPHSFSN Trigger: GTTTGAAAATGAGTGGGGTGGTTGTTTGTTGAATCAGTGAGACAATGAGTAGGGAATGAGGGAGACTGTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000659082.1 ENST00000665690.1 |
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| CDS TCA 72 bp | GAATTTGCTAAATTCTTTCTTTCTCTAGCCAAGGAGTaGGAAAGAAGCAGGACTGGTATACACCTAGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: EFAKFFLSLAKE*ERSRTGIHLGP Trigger: TGGCCCTAGGTGTATACCAGTCCTGCTTCTTTCTCACTCCTTGGCTAGAGAAAGAAAGAATTTAGCAAATTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659082.1 ENST00000665690.1 |
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| CDS CAA 72 bp | AAGAAGCAGGACTGGTATACACCTAGGGCCATTTCCTaGGCCCATGTATTCAAAGTTAATGTGGAGAAGATA | + |
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Preference number: 6 (lower is better) Translates to: KKQDWYTPRAIS*AHVFKVNVEKI Trigger: TATCTTCTCCACATTAACTTTGAATACATGGGCCAAGGAAATGGCCCTAGGTGTATACCAGTCCTGCTTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659082.1 ENST00000665690.1 |
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| CDS CAA 90 bp | GGAGTGAGAAAGAAGCAGGACTGGTATACACCTAGGGCCATTTCCTaGGCCCATGTATTCAAAGTTAATGTGGAGAAGATAATTTCCATT | + |
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Preference number: 6 (lower is better) Translates to: GVRKKQDWYTPRAIS*AHVFKVNVEKIISI Trigger: AATGGAAATTATCTTCTCCACATTAACTTTGAATACATGGGCCAAGGAAATGGCCCTAGGTGTATACCAGTCCTGCTTCTTTCTCACTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659082.1 ENST00000665690.1 |
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| CDS GCA 72 bp | AGACAGTTTGAGAACCTCTGTCCTCGAATATCACACTaGTTCTCATGCAACTGTGAAGTGAATAAAACTTCA | + |
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Preference number: 6 (lower is better) Translates to: RQFENLCPRISH*FSCNCEVNKTS Trigger: TGAAGTTTTATTCACTTCACAGTTGCATGAGAAGCAGTGTGATATTCGAGGACAGAGGTTCTCAAACTGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS TCA 72 bp | GATGCTCACAATAATCTCTTCAGTTTAACATTGCTCTaGGGACCTTCATTAACTGTTATGGAGCCCTTCATA | + |
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Preference number: 6 (lower is better) Translates to: DAHNNLFSLTLL*GPSLTVMEPFI Trigger: TATGAAGGGCTCCATAACAGTTAATGAAGGTCCTCAGAGCAATGTTAAACTGAAGAGATTATTGTGAGCATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437118.1 |
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| CDS GCA 72 bp | GAGAACCTCTGTCCTCGAATATCACACTGCTTCTCATaGAACTGTGAAGTGAATAAAACTTCATTAACTGTT | + |
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Preference number: 6 (lower is better) Translates to: ENLCPRISHCFS*NCEVNKTSLTV Trigger: AACAGTTAATGAAGTTTTATTCACTTCACAGTTGCATGAGAAGCAGTGTGATATTCGAGGACAGAGGTTCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659082.1 |
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| CDS CAA 72 bp | CCCACTCATTTTCAAACATCACTTCAGATCAACTCTTaGTTACCAGATAAGATTCCCTACAATGCTTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: PTHFQTSLQINS*LPDKIPYNAWL Trigger: AAGCCAAGCATTGTAGGGAATCTTATCTGGTAACAAAGAGTTGATCTGAAGTGATGTTTGAAAATGAGTGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659082.1 ENST00000665690.1 |
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