Pregenerated sensors for LINC01817 (Homo sapiens)

Ensembl gene IDs: ENSG00000231420

Ensembl transcript IDs: ENST00000429317.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTGACTAATGTGTTGTTCCTTTGGTCTCAAGTTCCCCAGCAATTCTaGCTTGTCTCTACCTTTTGGAGTCTTCTTATGCTTGTTTCATAT	+
Preference number: 5 (lower is better) Translates to: LTNVLFLWSQVPQQF*LVSTFWSLLMLVSY Trigger: ATATGAAACAAGCATAAGAAGACTCCAAAAGGTAGAGACAAGGCAGAATTGCTGGGGAACTTGAGACCAAAGGAACAACACATTAGTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429317.1
CDS TCA 72 bp	TCAACCATGAGAATCCCTCTTTCCCCCAAGGCTCTTTaGTTATTCTTCCACCTGGAGAACTGGGTGGTGGAT	+
Preference number: 6 (lower is better) Translates to: STMRIPLSPKAL*LFFHLENWVVD Trigger: ATCCACCACCCAGTTCTCCAGGTGGAAGAATAATCAAAGAGCCTTGGGGGAAAGAGGGATTCTCATGGTTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000429317.1
CDS CAA 90 bp	TTCCACCTGGAGAACTGGGTGGTGGATATCAGACTGACTAATGTGTaGTTCCTTTGGTCTCAAGTTCCCCAGCAATTCTGCCTTGTCTCT	+
Preference number: 6 (lower is better) Translates to: FHLENWVVDIRLTNV*FLWSQVPQQFCLVS Trigger: AGAGACAAGGCAGAATTGCTGGGGAACTTGAGACCAAAGGAACAACACATTAGTCAGTCTGATATCCACCACCCAGTTCTCCAGGTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429317.1
CDS CAA 72 bp	GAGAACTGGGTGGTGGATATCAGACTGACTAATGTGTaGTTCCTTTGGTCTCAAGTTCCCCAGCAATTCTGC	+
Preference number: 6 (lower is better) Translates to: ENWVVDIRLTNV*FLWSQVPQQFC Trigger: GCAGAATTGCTGGGGAACTTGAGACCAAAGGAACAACACATTAGTCAGTCTGATATCCACCACCCAGTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429317.1
CDS GCA 72 bp	GTGTTGTTCCTTTGGTCTCAAGTTCCCCAGCAATTCTaGCTTGTCTCTACCTTTTGGAGTCTTCTTATGCTT	+
Preference number: 6 (lower is better) Translates to: VLFLWSQVPQQF*LVSTFWSLLML Trigger: AAGCATAAGAAGACTCCAAAAGGTAGAGACAAGGCAGAATTGCTGGGGAACTTGAGACCAAAGGAACAACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429317.1
CDS CAA 72 bp	ATGTTTTTCTCTGATGGAGCACTCACACAGTCGGGTTaGTGTTGTAAAACGGAGGAAATTATCCAACGGCTG	+
Preference number: 6 (lower is better) Translates to: MFFSDGALTQSG*CCKTEEIIQRL Trigger: CAGCCGTTGGATAATTTCCTCCGTTTTACAACACAAACCCGACTGTGTGAGTGCTCCATCAGAGAAAAACAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000429317.1
CDS CAA 72 bp	TGTTCCTTTGGTCTCAAGTTCCCCAGCAATTCTGCCTaGTCTCTACCTTTTGGAGTCTTCTTATGCTTGTTT	+
Preference number: 6 (lower is better) Translates to: CSFGLKFPSNSA*SLPFGVFLCLF Trigger: AAACAAGCATAAGAAGACTCCAAAAGGTAGAGACAAGGCAGAATTGCTGGGGAACTTGAGACCAAAGGAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429317.1
CDS CCA 72 bp	ACAAACACTGAAACCAGGAATTTAATCACAGCTGGATaGATTGTGCACAGATGTCTCACGCAAGTTAGCATA	+
Preference number: 6 (lower is better) Translates to: TNTETRNLITAG*IVHRCLTQVSI Trigger: TATGCTAACTTGCGTGAGACATCTGTGCACAATCCATCCAGCTGTGATTAAATTCCTGGTTTCAGTGTTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429317.1
CDS CAA 90 bp	CTAATGTGTTGTTCCTTTGGTCTCAAGTTCCCCAGCAATTCTGCCTaGTCTCTACCTTTTGGAGTCTTCTTATGCTTGTTTCATATAAAA	+
Preference number: 6 (lower is better) Translates to: LMCCSFGLKFPSNSA*SLPFGVFLCLFHIK Trigger: TTTTATATGAAACAAGCATAAGAAGACTCCAAAAGGTAGAGACAAGGCAGAATTGCTGGGGAACTTGAGACCAAAGGAACAACACATTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429317.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu