Pregenerated sensors for LINC01816 (Homo sapiens)

Ensembl gene IDs: ENSG00000231327

Ensembl transcript IDs: ENST00000414141.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TGGAGGGGACTGCTGGAGGGTCCCATCTGGGAAAGCAGGCACGGATaGGGGGACATTTCCGCCCGTCACCCTGGCAAAGCGCTCGCAGGG	+
Preference number: 5 (lower is better) Translates to: WRGLLEGPIWESRHG*GDISARHPGKALAG Trigger: CCCTGCGAGCGCTTTGCCAGGGTGACGGGCGGAAATGTCCCCGCATCCGTGCCTGCTTTCCCAGATGGGACCCTCCAGCAGTCCCCTCCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000414141.1
CDS CCA 72 bp	TCGCGCTGCGGGGGAGGAAGCGCCTTCCGCGGTCGCTaGGGGGAAGTGGTTAGGAGGAAGCACGGGCAGTGG	+
Preference number: 6 (lower is better) Translates to: SRCGGGSAFRGR*GEVVRRKHGQW Trigger: CCACTGCCCGTGCTTCCTCCTAACCACTTCCCCCCAGCGACCGCGGAAGGCGCTTCCTCCCCCGCAGCGCGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000414141.1
CDS CCA 72 bp	CAGGCACGGATGCGGGGACATTTCCGCCCGTCACCCTaGCAAAGCGCTCGCAGGGCTGGAGGGACAGAGTTC	+
Preference number: 6 (lower is better) Translates to: QARMRGHFRPSP*QSARRAGGTEF Trigger: GAACTCTGTCCCTCCAGCCCTGCGAGCGCTTTGCCAGGGTGACGGGCGGAAATGTCCCCGCATCCGTGCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414141.1
CDS GCA 72 bp	CTGCTGGAGGGTCCCATCTGGGAAAGCAGGCACGGATaGGGGGACATTTCCGCCCGTCACCCTGGCAAAGCG	+
Preference number: 6 (lower is better) Translates to: LLEGPIWESRHG*GDISARHPGKA Trigger: CGCTTTGCCAGGGTGACGGGCGGAAATGTCCCCGCATCCGTGCCTGCTTTCCCAGATGGGACCCTCCAGCAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414141.1
CDS CCA 72 bp	TGGTTAGGAGGAAGCACGGGCAGTGGAGGGGACTGCTaGAGGGTCCCATCTGGGAAAGCAGGCACGGATGCG	+
Preference number: 6 (lower is better) Translates to: WLGGSTGSGGDC*RVPSGKAGTDA Trigger: CGCATCCGTGCCTGCTTTCCCAGATGGGACCCTCCAGCAGTCCCCTCCACTGCCCGTGCTTCCTCCTAACCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414141.1
CDS GCA 72 bp	CGTGGGACGCCCCAGGGGCCCTGCTCGCAGCCACTCTaGTCAGGGTCATTTATAGTCTCTCCGTTCTTTGTT	+
Preference number: 6 (lower is better) Translates to: RGTPQGPCSQPL*SGSFIVSPFFV Trigger: AACAAAGAACGGAGAGACTATAAATGACCCTGAGCAGAGTGGCTGCGAGCAGGGCCCCTGGGGCGTCCCACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414141.1
CDS TCA 72 bp	AGGATGTGGAGAGTGGGCGCCTTGGGAAGACGAAATTaGGTATGTGCGGGGGAGGGGTCATATGAAACAAGG	+
Preference number: 6 (lower is better) Translates to: RMWRVGALGRRN*VCAGEGSYETR Trigger: CCTTGTTTCATATGACCCCTCCCCCGCACATACTCAATTTCGTCTTCCCAAGGCGCCCACTCTCCACATCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000414141.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu