Pregenerated sensors for LINC01815 (Homo sapiens)
Ensembl gene IDs: ENSG00000235519Ensembl transcript IDs: ENST00000446580.3, ENST00000641468.1, ENST00000654231.1, ENST00000656933.1, ENST00000657869.1, ENST00000657999.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACAGCAGAATGGCTGCCAGGGCAGGAGGTACGCTGGAATTCTTCATaGAGCCTTTTCTTCCCTTTAGCAGCCAGTGGCAGTCCTGGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: TAEWLPGQEVRWNSS*SLFFPLAASGSPGL Trigger: CAAACCAGGACTGCCACTGGCTGCTAAAGGGAAGAAAAGGCTCCATGAAGAATTCCAGCGTACCTCCTGCCCTGGCAGCCATTCTGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS CCA 90 bp | ATAGCATGCTGCTATCTGGTGAATGTTTCCATAGAAACAGCAGAATaGCTGCCAGGGCAGGAGGTACGCTGGAATTCTTCATGGAGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: IACCYLVNVSIETAE*LPGQEVRWNSSWSL Trigger: AAGGCTCCATGAAGAATTCCAGCGTACCTCCTGCCCTGGCAGCCATTCTGCTGTTTCTATGGAAACATTCACCAGATAGCAGCATGCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS CCA 90 bp | CATGGTTCTAAAGGCTGGGAAGTCCAAGAAAATGTCACTGGCATCTaGCCCCTAGGCTTCATGCTGAGACCATGTGCCAATTCAACCTTT | + |
|
Preference number: 5 (lower is better) Translates to: HGSKGWEVQENVTGI*PLGFMLRPCANSTF Trigger: AAAGGTTGAATTGGCACATGGTCTCAGCATGAAGCCTAGGGGCCAGATGCCAGTGACATTTTCTTGGACTTCCCAGCCTTTAGAACCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000446580.3 ENST00000641468.1 |
||
| CDS TCA 90 bp | GAGCCTTTTCTTCCCTTTAGCAGCCAGTGGCAGTCCTGGTTTGGTTaGACTTATGAGCAGACAGACATTGATTTGAAGCTGCATGTTCAA | + |
|
Preference number: 5 (lower is better) Translates to: EPFLPFSSQWQSWFG*TYEQTDIDLKLHVQ Trigger: TTGAACATGCAGCTTCAAATCAATGTCTGTCTGCTCATAAGTTCAACCAAACCAGGACTGCCACTGGCTGCTAAAGGGAAGAAAAGGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS GCA 90 bp | GTGATGAAAGGAAGATGCCTTCTTCTTCACTTGCACAGTATAGCATaGTGCTATCTGGTGAATGTTTCCATAGAAACAGCAGAATGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: VMKGRCLLLHLHSIA*CYLVNVSIETAEWL Trigger: CAGCCATTCTGCTGTTTCTATGGAAACATTCACCAGATAGCAGCATGCTATACTGTGCAAGTGAAGAAGAAGGCATCTTCCTTTCATCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS CCA 90 bp | CATGGTTCTAAAGGCTGGGAAGTCCAAGAAAATGTCACTGGCATCTaGCCCCTTTCTCTTGAACGATTTATCTGTCAGAATAAAGAACTG | + |
|
Preference number: 5 (lower is better) Translates to: HGSKGWEVQENVTGI*PLSLERFICQNKEL Trigger: CAGTTCTTTATTCTGACAGATAAATCGTTCAAGAGAAAGGGGCCAGATGCCAGTGACATTTTCTTGGACTTCCCAGCCTTTAGAACCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS TCA 72 bp | TTCCTGGACCCTCCACACCCTAGCGGCTCTGTCACGTaGCACTCAAGTGGCCGCCATTATTATGGCCCGACA | + |
|
Preference number: 6 (lower is better) Translates to: FLDPPHPSGSVT*HSSGRHYYGPT Trigger: TGTCGGGCCATAATAATGGCGGCCACTTGAGTGTCACGTGACAGAGCCGCTAGGGTGTGGAGGGTCCAGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657999.1 |
||
| CDS CCA 72 bp | TGGCTGCCAGGGCAGGAGGTACGCTGGAATTCTTCATaGAGCCTTTTCTTCCCTTTAGCAGCCAGTGGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: WLPGQEVRWNSS*SLFFPLAASGS Trigger: ACTGCCACTGGCTGCTAAAGGGAAGAAAAGGCTCCATGAAGAATTCCAGCGTACCTCCTGCCCTGGCAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS CCA 72 bp | TGCTATCTGGTGAATGTTTCCATAGAAACAGCAGAATaGCTGCCAGGGCAGGAGGTACGCTGGAATTCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: CYLVNVSIETAE*LPGQEVRWNSS Trigger: TGAAGAATTCCAGCGTACCTCCTGCCCTGGCAGCCATTCTGCTGTTTCTATGGAAACATTCACCAGATAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS TCA 72 bp | CTTCCCTTTAGCAGCCAGTGGCAGTCCTGGTTTGGTTaGACTTATGAGCAGACAGACATTGATTTGAAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: LPFSSQWQSWFG*TYEQTDIDLKL Trigger: CAGCTTCAAATCAATGTCTGTCTGCTCATAAGTTCAACCAAACCAGGACTGCCACTGGCTGCTAAAGGGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS GCA 72 bp | GGAAGATGCCTTCTTCTTCACTTGCACAGTATAGCATaGTGCTATCTGGTGAATGTTTCCATAGAAACAGCA | + |
|
Preference number: 6 (lower is better) Translates to: GRCLLLHLHSIA*CYLVNVSIETA Trigger: TGCTGTTTCTATGGAAACATTCACCAGATAGCAGCATGCTATACTGTGCAAGTGAAGAAGAAGGCATCTTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS CCA 72 bp | ACAATACAAGTTTATTTGGATCATGGTTCTAAAGGCTaGGAAGTCCAAGAAAATGTCACTGGCATCTGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: TIQVYLDHGSKG*EVQENVTGIWP Trigger: GGGCCAGATGCCAGTGACATTTTCTTGGACTTCCCAGCCTTTAGAACCATGATCCAAATAAACTTGTATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||
| CDS TCA 72 bp | GGTTTGGTTGAACTTATGAGCAGACAGACATTGATTTaGAGCTGCATGTTCAAGAAGAACCAAGCTCAAAGC | + |
|
Preference number: 6 (lower is better) Translates to: GLVELMSRQTLI*SCMFKKNQAQS Trigger: GCTTTGAGCTTGGTTCTTCTTGAACATGCAGCTTCAAATCAATGTCTGTCTGCTCATAAGTTCAACCAAACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000446580.3 ENST00000641468.1 ENST00000654231.1 ENST00000656933.1 ENST00000657869.1 ENST00000657999.1 |
||