Pregenerated sensors for LINC01810 (Homo sapiens)
Ensembl gene IDs: ENSG00000237266Ensembl transcript IDs: ENST00000450397.1, ENST00000662285.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAGTGTCCCAAATGCATTGTCCCCAGTGGCAAAAGGTCCCTCCCGTaGGGTGTGACACACTCTCCTCTCAGCACTGCCAGGCTCCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: KCPKCIVPSGKRSLP*GVTHSPLSTARLLG Trigger: CCCCAGGAGCCTGGCAGTGCTGAGAGGAGAGTGTGTCACACCCCACGGGAGGGACCTTTTGCCACTGGGGACAATGCATTTGGGACACTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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| CDS CCA 90 bp | ACACGGATTCACATCCCAATCTTTCACTTACACACTGTGTGTCCCTaGGCAAGTCCCTTGACATTCAGTGAATTCTATTTTCTCCATCTC | + |
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Preference number: 5 (lower is better) Translates to: TRIHIPIFHLHTVCP*ASPLTFSEFYFLHL Trigger: GAGATGGAGAAAATAGAATTCACTGAATGTCAAGGGACTTGCCCAGGGACACACAGTGTGTAAGTGAAAGATTGGGATGTGAATCCGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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| CDS TCA 90 bp | TACTATTTTGGTAAGATAATGTGCCCTAATAACTCAATCAGGACTTaGATTAGTATACCTCTGCTTGCCAGACACTACACCAGGAGTTTT | + |
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Preference number: 5 (lower is better) Translates to: YYFGKIMCPNNSIRT*ISIPLLARHYTRSF Trigger: AAAACTCCTGGTGTAGTGTCTGGCAAGCAGAGGTATACTAATTCAAGTCCTGATTGAGTTATTAGGGCACATTATCTTACCAAAATAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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| CDS CCA 72 bp | AAATGCATTGTCCCCAGTGGCAAAAGGTCCCTCCCGTaGGGTGTGACACACTCTCCTCTCAGCACTGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: KCIVPSGKRSLP*GVTHSPLSTAR Trigger: CCTGGCAGTGCTGAGAGGAGAGTGTGTCACACCCCACGGGAGGGACCTTTTGCCACTGGGGACAATGCATTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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| CDS CAA 90 bp | TCCACTTCACTCCTGAAGGGGACCCTGGAGAAGCTAAAAGGGACCTaGGAAGGCACCCTGGAGAAGCTGGAAGGGACCCTGGATAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: STSLLKGTLEKLKGT*EGTLEKLEGTLDKE Trigger: CTCCTTATCCAGGGTCCCTTCCAGCTTCTCCAGGGTGCCTTCCAAGGTCCCTTTTAGCTTCTCCAGGGTCCCCTTCAGGAGTGAAGTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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| CDS GCA 72 bp | TATCTTAACTTCCTGCTGATAGATAAGTGTCCCAAATaGATTGTCCCCAGTGGCAAAAGGTCCCTCCCGTGG | + |
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Preference number: 6 (lower is better) Translates to: YLNFLLIDKCPK*IVPSGKRSLPW Trigger: CCACGGGAGGGACCTTTTGCCACTGGGGACAATGCATTTGGGACACTTATCTATCAGCAGGAAGTTAAGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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| CDS CAA 90 bp | GGAGGAGGCATCCTTCCCAGGTTACCCCAGCTTGATCTTTTTGTTTaGGTGTTGCTGCTAGTTCTGAATCTTCAGCAACAGGCAATGTTG | + |
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Preference number: 6 (lower is better) Translates to: GGGILPRLPQLDLFV*VLLLVLNLQQQAML Trigger: CAACATTGCCTGTTGCTGAAGATTCAGAACTAGCAGCAACACCAAAACAAAAAGATCAAGCTGGGGTAACCTGGGAAGGATGCCTCCTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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| CDS CAA 90 bp | ATCCCAATCTTTCACTTACACACTGTGTGTCCCTGGGCAAGTCCCTaGACATTCAGTGAATTCTATTTTCTCCATCTCACAGCCTTTGGT | + |
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Preference number: 6 (lower is better) Translates to: IPIFHLHTVCPWASP*TFSEFYFLHLTAFG Trigger: ACCAAAGGCTGTGAGATGGAGAAAATAGAATTCACTGAATGTCAAGGGACTTGCCCAGGGACACACAGTGTGTAAGTGAAAGATTGGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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| CDS CAA 72 bp | ATCCTTCCCAGGTTACCCCAGCTTGATCTTTTTGTTTaGGTGTTGCTGCTAGTTCTGAATCTTCAGCAACAG | + |
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Preference number: 6 (lower is better) Translates to: ILPRLPQLDLFV*VLLLVLNLQQQ Trigger: CTGTTGCTGAAGATTCAGAACTAGCAGCAACACCAAAACAAAAAGATCAAGCTGGGGTAACCTGGGAAGGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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| CDS CAA 72 bp | CTCGTTACAATGTCACCCCAGCTTGATCTTTTTGTTTaGGTGTTGCTGCTAGTTCTGAATCTTCAGCAACAG | + |
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Preference number: 6 (lower is better) Translates to: LVTMSPQLDLFV*VLLLVLNLQQQ Trigger: CTGTTGCTGAAGATTCAGAACTAGCAGCAACACCAAAACAAAAAGATCAAGCTGGGGTGACATTGTAACGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000450397.1 |
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| CDS TCA 72 bp | GGTAAGATAATGTGCCCTAATAACTCAATCAGGACTTaGATTAGTATACCTCTGCTTGCCAGACACTACACC | + |
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Preference number: 6 (lower is better) Translates to: GKIMCPNNSIRT*ISIPLLARHYT Trigger: GGTGTAGTGTCTGGCAAGCAGAGGTATACTAATTCAAGTCCTGATTGAGTTATTAGGGCACATTATCTTACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662285.1 |
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