Pregenerated sensors for LINC01807 (Homo sapiens)
Ensembl gene IDs: ENSG00000232023Ensembl transcript IDs: ENST00000432481.2, ENST00000656071.1, ENST00000665053.1, ENST00000667233.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGGAGTGCCAGACAGCGGGCGCAGGTCAGTGGGTGCGCGCACCGTaGGCGAGCCAAAGCAGGGCGAGGCATTGCCTCACTTTGGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: RECQTAGAGQWVRAP*ASQSRARHCLTLGS Trigger: GCTTCCCAAAGTGAGGCAATGCCTCGCCCTGCTTTGGCTCGCGCACGGTGCGCGCACCCACTGACCTGCGCCCGCTGTCTGGCACTCCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS CCA 90 bp | GCGCACCGTGCGCGAGCCAAAGCAGGGCGAGGCATTGCCTCACTTTaGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAA | + |
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Preference number: 5 (lower is better) Translates to: AHRARAKAGRGIASL*EAQGVREFPFRVKE Trigger: TTCTTTGACTCGGAAAGGGAACTCCCTGACCCCTTGCGCTTCCCAAAGTGAGGCAATGCCTCGCCCTGCTTTGGCTCGCGCACGGTGCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS TCA 90 bp | CAGCTCCGGTCTGCAGCTCCCAGCATGAGCGACGCAGAAGACGGGTaGTTTCTGCATTTCCATCTGAGGTACAGGGTTCATCTCACTAGG | + |
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Preference number: 5 (lower is better) Translates to: QLRSAAPSMSDAEDG*FLHFHLRYRVHLTR Trigger: CCTAGTGAGATGAACCCTGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCATGCTGGGAGCTGCAGACCGGAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS TCA 90 bp | AGGCTCCAGGGAGGAAGTGTGCACTCATACCGAAGAGACATTAGATaGAGTCTTCATTGGATTGGGAGGATGAAGTTGAAGGTAGATCTG | + |
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Preference number: 5 (lower is better) Translates to: RLQGGSVHSYRRDIR*SLHWIGRMKLKVDL Trigger: CAGATCTACCTTCAACTTCATCCTCCCAATCCAATGAAGACTTCATCTAATGTCTCTTCGGTATGAGTGCACACTTCCTCCCTGGAGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432481.2 |
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| CDS TCA 90 bp | CATTGGATTGGGAGGATGAAGTTGAAGGTAGATCTGTGTGTTTGGTaGCAGGAAGATCTGCCTGTTAGCTTATCTTTTCCCTGGGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: HWIGRMKLKVDLCVW*QEDLPVSLSFPWVW Trigger: CCAAACCCAGGGAAAAGATAAGCTAACAGGCAGATCTTCCTGTCACCAAACACACAGATCTACCTTCAACTTCATCCTCCCAATCCAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432481.2 |
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| CDS GCA 72 bp | CTAGGGAGTGCCAGACAGCGGGCGCAGGTCAGTGGGTaGGCGCACCGTGCGCGAGCCAAAGCAGGGCGAGGC | + |
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Preference number: 6 (lower is better) Translates to: LGSARQRAQVSG*AHRARAKAGRG Trigger: GCCTCGCCCTGCTTTGGCTCGCGCACGGTGCGCGCACCCACTGACCTGCGCCCGCTGTCTGGCACTCCCTAG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS CCA 72 bp | CTCACTAGGGAGTGCCAGACAGCGGGCGCAGGTCAGTaGGTGCGCGCACCGTGCGCGAGCCAAAGCAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: LTRECQTAGAGQ*VRAPCASQSRA Trigger: CGCCCTGCTTTGGCTCGCGCACGGTGCGCGCACCCACTGACCTGCGCCCGCTGTCTGGCACTCCCTAGTGAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS GCA 72 bp | CAGACAGCGGGCGCAGGTCAGTGGGTGCGCGCACCGTaGGCGAGCCAAAGCAGGGCGAGGCATTGCCTCACT | + |
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Preference number: 6 (lower is better) Translates to: QTAGAGQWVRAP*ASQSRARHCLT Trigger: AGTGAGGCAATGCCTCGCCCTGCTTTGGCTCGCGCACGGTGCGCGCACCCACTGACCTGCGCCCGCTGTCTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS CAA 72 bp | GCGCGCACCGTGCGCGAGCCAAAGCAGGGCGAGGCATaGCCTCACTTTGGGAAGCGCAAGGGGTCAGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: ARTVREPKQGEA*PHFGKRKGSGS Trigger: ACTCCCTGACCCCTTGCGCTTCCCAAAGTGAGGCAATGCCTCGCCCTGCTTTGGCTCGCGCACGGTGCGCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS GCA 72 bp | CGCGCACCGTGCGCGAGCCAAAGCAGGGCGAGGCATTaGCTCACTTTGGGAAGCGCAAGGGGTCAGGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: RAPCASQSRARH*LTLGSARGQGV Trigger: AACTCCCTGACCCCTTGCGCTTCCCAAAGTGAGGCAATGCCTCGCCCTGCTTTGGCTCGCGCACGGTGCGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS CAA 90 bp | CGCGCACCGTGCGCGAGCCAAAGCAGGGCGAGGCATTGCCTCACTTaGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: RAPCASQSRARHCLT*GSARGQGVPFPSQR Trigger: TCTTTGACTCGGAAAGGGAACTCCCTGACCCCTTGCGCTTCCCAAAGTGAGGCAATGCCTCGCCCTGCTTTGGCTCGCGCACGGTGCGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS CCA 72 bp | GCGCGAGCCAAAGCAGGGCGAGGCATTGCCTCACTTTaGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGA | + |
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Preference number: 6 (lower is better) Translates to: ARAKAGRGIASL*EAQGVREFPFR Trigger: TCGGAAAGGGAACTCCCTGACCCCTTGCGCTTCCCAAAGTGAGGCAATGCCTCGCCCTGCTTTGGCTCGCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS CAA 72 bp | TGCGCGAGCCAAAGCAGGGCGAGGCATTGCCTCACTTaGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCG | + |
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Preference number: 6 (lower is better) Translates to: CASQSRARHCLT*GSARGQGVPFP Trigger: CGGAAAGGGAACTCCCTGACCCCTTGCGCTTCCCAAAGTGAGGCAATGCCTCGCCCTGCTTTGGCTCGCGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS TCA 72 bp | GGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTaGCGGACAGCACCTGGAAAATCGGGTCACTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: GQGVPFPSQRKG*RTAPGKSGHSH Trigger: GTGGGAGTGACCCGATTTTCCAGGTGCTGTCCGTCACCCCTTTCTTTGACTCGGAAAGGGAACTCCCTGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS TCA 72 bp | TCTGCAGCTCCCAGCATGAGCGACGCAGAAGACGGGTaGTTTCTGCATTTCCATCTGAGGTACAGGGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: SAAPSMSDAEDG*FLHFHLRYRVH Trigger: ATGAACCCTGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCATGCTGGGAGCTGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656071.1 |
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| CDS TCA 72 bp | GGAGGAAGTGTGCACTCATACCGAAGAGACATTAGATaGAGTCTTCATTGGATTGGGAGGATGAAGTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: GGSVHSYRRDIR*SLHWIGRMKLK Trigger: CTTCAACTTCATCCTCCCAATCCAATGAAGACTTCATCTAATGTCTCTTCGGTATGAGTGCACACTTCCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432481.2 |
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| CDS CAA 72 bp | GGTCATTCCATGGAAGAATATCTGTACTTGTTTGAGTaGCAGGCTGAGCTAACTCTTCTTCCATGGAACATG | + |
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Preference number: 6 (lower is better) Translates to: GHSMEEYLYLFE*QAELTLLPWNM Trigger: CATGTTCCATGGAAGAAGAGTTAGCTCAGCCTGCAACTCAAACAAGTACAGATATTCTTCCATGGAATGACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000432481.2 ENST00000656071.1 ENST00000665053.1 ENST00000667233.1 |
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| CDS GCA 72 bp | TTTGGGTGTCAGAAAGTAGAGAAAAGGCATTTCCCATaGTCTCGTCCAATTATACTCATATTACCTCAAACT | + |
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Preference number: 6 (lower is better) Translates to: FGCQKVEKRHFP*SRPIILILPQT Trigger: AGTTTGAGGTAATATGAGTATAATTGGACGAGAGCATGGGAAATGCCTTTTCTCTACTTTCTGACACCCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665053.1 |
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| CDS CCA 72 bp | CATTTTTATTACAATCCAAGTATGATGGTCATTCCATaGAAGAATATCTGTACTTGTTTGAGTTGCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: HFYYNPSMMVIP*KNICTCLSCRL Trigger: CAGCCTGCAACTCAAACAAGTACAGATATTCTTCCATGGAATGACCATCATACTTGGATTGTAATAAAAATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000432481.2 ENST00000656071.1 ENST00000665053.1 ENST00000667233.1 |
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