Pregenerated sensors for LINC01806 (Homo sapiens)
Ensembl gene IDs: ENSG00000227403Ensembl transcript IDs: ENST00000436506.2, ENST00000439050.1, ENST00000655684.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCAAAGCACTGGGGAAAGCCTGCTATGAAAATGCCAGGCCTTTCTTaGGGCTTAGACCGTCAACCTAATCCTAGCCAGAACTATCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: SKHWGKPAMKMPGLS*GLDRQPNPSQNYRR Trigger: CCTGCGATAGTTCTGGCTAGGATTAGGTTGACGGTCTAAGCCCCAAGAAAGGCCTGGCATTTTCATAGCAGGCTTTCCCCAGTGCTTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS GCA 90 bp | CTGGGCAACATAAACCATAAACCTTGCTGGATTTCTGCAAACTGCTaGGTGGAGGATACAAACGACATTCCTGTCAATGGGAGGAATAGA | + |
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Preference number: 5 (lower is better) Translates to: LGNINHKPCWISANC*VEDTNDIPVNGRNR Trigger: TCTATTCCTCCCATTGACAGGAATGTCGTTTGTATCCTCCACGCAGCAGTTTGCAGAAATCCAGCAAGGTTTATGGTTTATGTTGCCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS GCA 90 bp | AGAGCGTTGTGTTTATACATGCTGGGCAACATAAACCATAAACCTTaGTGGATTTCTGCAAACTGCTGCGTGGAGGATACAAACGACATT | + |
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Preference number: 5 (lower is better) Translates to: RALCLYMLGNINHKP*WISANCCVEDTNDI Trigger: AATGTCGTTTGTATCCTCCACGCAGCAGTTTGCAGAAATCCAGCAAGGTTTATGGTTTATGTTGCCCAGCATGTATAAACACAACGCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS TCA 90 bp | GGAGATGATGACACCCAGAACAAAATGTCTTTTTCACGAGGATGCTaGAGCTCTTGCTTTGTGATCTCTGTTTACAGAAGGAATGATCCA | + |
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Preference number: 5 (lower is better) Translates to: GDDDTQNKMSFSRGC*SSCFVISVYRRNDP Trigger: TGGATCATTCCTTCTGTAAACAGAGATCACAAAGCAAGAGCTTCAGCATCCTCGTGAAAAAGACATTTTGTTCTGGGTGTCATCATCTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS CCA 72 bp | TGGGGAAAGCCTGCTATGAAAATGCCAGGCCTTTCTTaGGGCTTAGACCGTCAACCTAATCCTAGCCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: WGKPAMKMPGLS*GLDRQPNPSQN Trigger: GTTCTGGCTAGGATTAGGTTGACGGTCTAAGCCCCAAGAAAGGCCTGGCATTTTCATAGCAGGCTTTCCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS TCA 72 bp | GAAATCAAGACAGAGATAGGCAGCACCCCCAGGATGTaGAGCTTGTTCCAATTGCAAGCTGTAGTGGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: EIKTEIGSTPRM*SLFQLQAVVEG Trigger: TCCTTCCACTACAGCTTGCAATTGGAACAAGCTTCACATCCTGGGGGTGCTGCCTATCTCTGTCTTGATTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS GCA 72 bp | ATAAACCATAAACCTTGCTGGATTTCTGCAAACTGCTaGGTGGAGGATACAAACGACATTCCTGTCAATGGG | + |
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Preference number: 6 (lower is better) Translates to: INHKPCWISANC*VEDTNDIPVNG Trigger: CCCATTGACAGGAATGTCGTTTGTATCCTCCACGCAGCAGTTTGCAGAAATCCAGCAAGGTTTATGGTTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS CAA 72 bp | AACTATCGCAGGACTATAATAGGGCAACAGAGTACTTaGTGTTTGAGAATTGGGGTAGGAGGACCAGGATGT | + |
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Preference number: 6 (lower is better) Translates to: NYRRTIIGQQST*CLRIGVGGPGC Trigger: ACATCCTGGTCCTCCTACCCCAATTCTCAAACACAAAGTACTCTGTTGCCCTATTATAGTCCTGCGATAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS TCA 72 bp | GACACCCAGAACAAAATGTCTTTTTCACGAGGATGCTaGAGCTCTTGCTTTGTGATCTCTGTTTACAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: DTQNKMSFSRGC*SSCFVISVYRR Trigger: CCTTCTGTAAACAGAGATCACAAAGCAAGAGCTTCAGCATCCTCGTGAAAAAGACATTTTGTTCTGGGTGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS GCA 72 bp | TGTTTATACATGCTGGGCAACATAAACCATAAACCTTaGTGGATTTCTGCAAACTGCTGCGTGGAGGATACA | + |
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Preference number: 6 (lower is better) Translates to: CLYMLGNINHKP*WISANCCVEDT Trigger: TGTATCCTCCACGCAGCAGTTTGCAGAAATCCAGCAAGGTTTATGGTTTATGTTGCCCAGCATGTATAAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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| CDS CCA 72 bp | TGCTTTGTGATCTCTGTTTACAGAAGGAATGATCCATaGAAAGGACTTAATTTCTCCATTTTCTCAGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: CFVISVYRRNDP*KGLNFSIFSGS Trigger: GCTGCCTGAGAAAATGGAGAAATTAAGTCCTTTCCATGGATCATTCCTTCTGTAAACAGAGATCACAAAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655684.1 |
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| CDS CCA 72 bp | TGCTTTGTGATCTCTGTTTACAGAAGGAATGATCCATaGAAAGGACTTAATTTCTCCATTTTCTGGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: CFVISVYRRNDP*KGLNFSIFWLS Trigger: AGAAAGCCAGAAAATGGAGAAATTAAGTCCTTTCCATGGATCATTCCTTCTGTAAACAGAGATCACAAAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439050.1 |
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| CDS CCA 72 bp | TTAGTAATTTATTTTCCAGGTGGAAACCAGGCTTCTTaGAAGACTTCAAACTATGCCAAATGGTCTGATTTC | + |
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Preference number: 6 (lower is better) Translates to: LVIYFPGGNQAS*KTSNYAKWSDF Trigger: GAAATCAGACCATTTGGCATAGTTTGAAGTCTTCCAAGAAGCCTGGTTTCCACCTGGAAAATAAATTACTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439050.1 ENST00000655684.1 |
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| CDS CCA 72 bp | CAGCTCTGCATTTATGGTATAGGTTACAGCCAAGACTaGATACAATCTCATCTCATAATATCCAAAAGAATA | + |
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Preference number: 6 (lower is better) Translates to: QLCIYGIGYSQD*IQSHLIISKRI Trigger: TATTCTTTTGGATATTATGAGATGAGATTGTATCCAGTCTTGGCTGTAACCTATACCATAAATGCAGAGCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000436506.2 ENST00000439050.1 ENST00000655684.1 |
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