Pregenerated sensors for LINC01805 (Homo sapiens)
Ensembl gene IDs: ENSG00000223863Ensembl transcript IDs: ENST00000436433.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGTTCCTGGGTTTCCCTTGGAGCAACTCGCCACAGGGCCTCTGTTTaGCCTGGGCCTTTCCAGGATGCGTTACTTAGTCTTGGTTCTCAG | + |
|
Preference number: 5 (lower is better) Translates to: RSWVSLGATRHRASV*PGPFQDALLSLGSQ Trigger: CTGAGAACCAAGACTAAGTAACGCATCCTGGAAAGGCCCAGGCCAAACAGAGGCCCTGTGGCGAGTTGCTCCAAGGGAAACCCAGGAACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS TCA 90 bp | GGCCTTTCCAGGATGCGTTACTTAGTCTTGGTTCTCAGGATCAGGTaGGGGCAACTCTCCTCTATGCTTAGCAGCCTGCCCAGCTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: GLSRMRYLVLVLRIR*GQLSSMLSSLPSCC Trigger: GCAGCAGCTGGGCAGGCTGCTAAGCATAGAGGAGAGTTGCCCTCACCTGATCCTGAGAACCAAGACTAAGTAACGCATCCTGGAAAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 90 bp | GGCAACTCTCCTCTATGCTTAGCAGCCTGCCCAGCTGCTGCCATTTaGAGAAAGCTTGAACCCAAGGAGAAGCCCTTTACGATCTGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: GNSPLCLAACPAAAI*RKLEPKEKPFTIWK Trigger: CTTCCAGATCGTAAAGGGCTTCTCCTTGGGTTCAAGCTTTCTGCAAATGGCAGCAGCTGGGCAGGCTGCTAAGCATAGAGGAGAGTTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS TCA 90 bp | TCTATGCTTAGCAGCCTGCCCAGCTGCTGCCATTTGCAGAAAGCTTaGACCCAAGGAGAAGCCCTTTACGATCTGGAAGAAGGTGCCATC | + |
|
Preference number: 5 (lower is better) Translates to: SMLSSLPSCCHLQKA*TQGEALYDLEEGAI Trigger: GATGGCACCTTCTTCCAGATCGTAAAGGGCTTCTCCTTGGGTTCAAGCTTTCTGCAAATGGCAGCAGCTGGGCAGGCTGCTAAGCATAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CCA 90 bp | CCAAGGAGAAGCCCTTTACGATCTGGAAGAAGGTGCCATCAACATTaGTACCTTTGCTTCTCGCATCAGCACCTGACATGTCTCCTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: PRRSPLRSGRRCHQH*YLCFSHQHLTCLLL Trigger: CAGGAGGAGACATGTCAGGTGCTGATGCGAGAAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCGTAAAGGGCTTCTCCTTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 90 bp | AGCCCTTTACGATCTGGAAGAAGGTGCCATCAACATTGGTACCTTTaGTTCTCGCATCAGCACCTGACATGTCTCCTCCTGAAACTTTTT | + |
|
Preference number: 5 (lower is better) Translates to: SPLRSGRRCHQHWYL*FSHQHLTCLLLKLF Trigger: AAAAAGTTTCAGGAGGAGACATGTCAGGTGCTGATGCGAGAAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCGTAAAGGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 72 bp | GATCAGGTGTTCAGAACCGCTGCTCGAGTGGTCCACTaGCCAGTGGGAGGAAGTGCTCTGAGGTGTAGATCT | + |
|
Preference number: 6 (lower is better) Translates to: DQVFRTAARVVH*PVGGSALRCRS Trigger: AGATCTACACCTCAGAGCACTTCCTCCCACTGGGCAGTGGACCACTCGAGCAGCGGTTCTGAACACCTGATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CCA 72 bp | TCTGCTTCCCAAACTTCCTCCTTCCTTCTCCGTTCCTaGGTTTCCCTTGGAGCAACTCGCCACAGGGCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: SASQTSSFLLRS*VSLGATRHRAS Trigger: AGAGGCCCTGTGGCGAGTTGCTCCAAGGGAAACCCAGGAACGGAGAAGGAAGGAGGAAGTTTGGGAAGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 72 bp | TCAGGTGAGGGCAACTCTCCTCTATGCTTAGCAGCCTaGCCAGCTGCTGCCATTTGCAGAAAGCTTGAACCC | + |
|
Preference number: 6 (lower is better) Translates to: SGEGNSPLCLAA*PAAAICRKLEP Trigger: GGGTTCAAGCTTTCTGCAAATGGCAGCAGCTGGGCAGGCTGCTAAGCATAGAGGAGAGTTGCCCTCACCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 72 bp | TGGTTCTCAGGATCAGGTGAGGGCAACTCTCCTCTATaGTTAGCAGCCTGCCCAGCTGCTGCCATTTGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: WFSGSGEGNSPL*LAACPAAAICR Trigger: TCTGCAAATGGCAGCAGCTGGGCAGGCTGCTAAGCATAGAGGAGAGTTGCCCTCACCTGATCCTGAGAACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CCA 72 bp | GTTTCCCTTGGAGCAACTCGCCACAGGGCCTCTGTTTaGCCTGGGCCTTTCCAGGATGCGTTACTTAGTCTT | + |
|
Preference number: 6 (lower is better) Translates to: VSLGATRHRASV*PGPFQDALLSL Trigger: AAGACTAAGTAACGCATCCTGGAAAGGCCCAGGCCAAACAGAGGCCCTGTGGCGAGTTGCTCCAAGGGAAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 72 bp | CCTCTATGCTTAGCAGCCTGCCCAGCTGCTGCCATTTaGAGAAAGCTTGAACCCAAGGAGAAGCCCTTTACG | + |
|
Preference number: 6 (lower is better) Translates to: PLCLAACPAAAI*RKLEPKEKPFT Trigger: CGTAAAGGGCTTCTCCTTGGGTTCAAGCTTTCTGCAAATGGCAGCAGCTGGGCAGGCTGCTAAGCATAGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS TCA 72 bp | AGCAGCCTGCCCAGCTGCTGCCATTTGCAGAAAGCTTaGACCCAAGGAGAAGCCCTTTACGATCTGGAAGAA | + |
|
Preference number: 6 (lower is better) Translates to: SSLPSCCHLQKA*TQGEALYDLEE Trigger: TTCTTCCAGATCGTAAAGGGCTTCTCCTTGGGTTCAAGCTTTCTGCAAATGGCAGCAGCTGGGCAGGCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 72 bp | GTCTCTCCACAAAAACCTGTTCCTAGATGCTGCTGCTaGGATGAGTCTGGGGATCAGGTGTTCAGAACCGCT | + |
|
Preference number: 6 (lower is better) Translates to: VSPQKPVPRCCC*DESGDQVFRTA Trigger: AGCGGTTCTGAACACCTGATCCCCAGACTCATCGCAGCAGCAGCATCTAGGAACAGGTTTTTGTGGAGAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CAA 90 bp | CCCAAGGAGAAGCCCTTTACGATCTGGAAGAAGGTGCCATCAACATaGGTACCTTTGCTTCTCGCATCAGCACCTGACATGTCTCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: PKEKPFTIWKKVPST*VPLLLASAPDMSPP Trigger: AGGAGGAGACATGTCAGGTGCTGATGCGAGAAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCGTAAAGGGCTTCTCCTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 72 bp | TCAGTCTCTCCACAAAAACCTGTTCCTAGATGCTGCTaGTGCGATGAGTCTGGGGATCAGGTGTTCAGAACC | + |
|
Preference number: 6 (lower is better) Translates to: SVSPQKPVPRCC*CDESGDQVFRT Trigger: GGTTCTGAACACCTGATCCCCAGACTCATCGCAGCAGCAGCATCTAGGAACAGGTTTTTGTGGAGAGACTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 72 bp | CGATCTGGAAGAAGGTGCCATCAACATTGGTACCTTTaGTTCTCGCATCAGCACCTGACATGTCTCCTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: RSGRRCHQHWYL*FSHQHLTCLLL Trigger: CAGGAGGAGACATGTCAGGTGCTGATGCGAGAAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 72 bp | TTCTCAGTCTCTCCACAAAAACCTGTTCCTAGATGCTaGTGCTGCGATGAGTCTGGGGATCAGGTGTTCAGA | + |
|
Preference number: 6 (lower is better) Translates to: FSVSPQKPVPRC*CCDESGDQVFR Trigger: TCTGAACACCTGATCCCCAGACTCATCGCAGCAGCAGCATCTAGGAACAGGTTTTTGTGGAGAGACTGAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CAA 72 bp | ACGATCTGGAAGAAGGTGCCATCAACATTGGTACCTTaGCTTCTCGCATCAGCACCTGACATGTCTCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: TIWKKVPSTLVP*LLASAPDMSPP Trigger: AGGAGGAGACATGTCAGGTGCTGATGCGAGAAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCGT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS GCA 72 bp | AACCCAAGGAGAAGCCCTTTACGATCTGGAAGAAGGTaGCATCAACATTGGTACCTTTGCTTCTCGCATCAG | + |
|
Preference number: 6 (lower is better) Translates to: NPRRSPLRSGRR*HQHWYLCFSHQ Trigger: CTGATGCGAGAAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCGTAAAGGGCTTCTCCTTGGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CCA 72 bp | AGCCCTTTACGATCTGGAAGAAGGTGCCATCAACATTaGTACCTTTGCTTCTCGCATCAGCACCTGACATGT | + |
|
Preference number: 6 (lower is better) Translates to: SPLRSGRRCHQH*YLCFSHQHLTC Trigger: ACATGTCAGGTGCTGATGCGAGAAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCGTAAAGGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CAA 72 bp | AAGCCCTTTACGATCTGGAAGAAGGTGCCATCAACATaGGTACCTTTGCTTCTCGCATCAGCACCTGACATG | + |
|
Preference number: 6 (lower is better) Translates to: KPFTIWKKVPST*VPLLLASAPDM Trigger: CATGTCAGGTGCTGATGCGAGAAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCGTAAAGGGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CAA 90 bp | AAGCCCTTTACGATCTGGAAGAAGGTGCCATCAACATTGGTACCTTaGCTTCTCGCATCAGCACCTGACATGTCTCCTCCTGAAACTTTT | + |
|
Preference number: 6 (lower is better) Translates to: KPFTIWKKVPSTLVP*LLASAPDMSPPETF Trigger: AAAAGTTTCAGGAGGAGACATGTCAGGTGCTGATGCGAGAAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCGTAAAGGGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CCA 72 bp | AGAAAGCTTGAACCCAAGGAGAAGCCCTTTACGATCTaGAAGAAGGTGCCATCAACATTGGTACCTTTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: RKLEPKEKPFTI*KKVPSTLVPLL Trigger: AAGCAAAGGTACCAATGTTGATGGCACCTTCTTCCAGATCGTAAAGGGCTTCTCCTTGGGTTCAAGCTTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||
| CDS CAA 72 bp | TTTTTCCTGCCTGTCTCTAGAGAACCATCTCCTTTTTaGCCAGGGCTTTCAGCCTTCATTTCTCCAGGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: FFLPVSREPSPF*PGLSAFISPGS Trigger: ACTTCCTGGAGAAATGAAGGCTGAAAGCCCTGGCAAAAAAGGAGATGGTTCTCTAGAGACAGGCAGGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000436433.1 |
||