Pregenerated sensors for LINC01802 (Homo sapiens)
Ensembl gene IDs: ENSG00000225064Ensembl transcript IDs: ENST00000438824.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCAGATGCTTTGGGAATCAGGAAGTGACCTGCTCCTCCTTGAAATaGCTCTGGGCTGGGGCAATGGTGACACTGCCACCTCATGGGATC | + |
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Preference number: 5 (lower is better) Translates to: GRCFGNQEVTCSSLK*LWAGAMVTLPPHGI Trigger: GATCCCATGAGGTGGCAGTGTCACCATTGCCCCAGCCCAGAGTCATTTCAAGGAGGAGCAGGTCACTTCCTGATTCCCAAAGCATCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS GCA 90 bp | GGGTGCCAGCATGGTAAGTTCTTGATGATGATTGTCTTCCTGATTTaGAGATGGCAGTCTTCTTCCTGTGTGCTCATATGGCCTTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: GCQHGKFLMMIVFLI*RWQSSSCVLIWPFL Trigger: GAGGAAAGGCCATATGAGCACACAGGAAGAAGACTGCCATCTGCAAATCAGGAAGACAATCATCATCAAGAACTTACCATGCTGGCACCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS GCA 90 bp | AATATCAGACTGGGTGGCTTAAACAACAGAAGCCCAAGTTCGGGGTaGCAGCATGGTAAGTTCTTGATGATGATTGTCTTCCTGATTTGC | + |
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Preference number: 5 (lower is better) Translates to: NIRLGGLNNRSPSSG*QHGKFLMMIVFLIC Trigger: GCAAATCAGGAAGACAATCATCATCAAGAACTTACCATGCTGGCACCCCGAACTTGGGCTTCTGTTGTTTAAGCCACCCAGTCTGATATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS TCA 90 bp | TTCTGCTCCATTTCTGAGAATGGACAGCATCGCTTTTTAGACCACTaGGCAGGAATAAGTTTTCAATGGTACAGGCAGATGCTTTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: FCSISENGQHRFLDH*AGISFQWYRQMLWE Trigger: TTCCCAAAGCATCTGCCTGTACCATTGAAAACTTATTCCTGCTCAGTGGTCTAAAAAGCGATGCTGTCCATTCTCAGAAATGGAGCAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS TCA 90 bp | ATTCAAAATATCAGCTTCCTTTCTCTTGCCTTTCTGCTCCATTTCTaGGAATGGACAGCATCGCTTTTTAGACCACTGAGCAGGAATAAG | + |
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Preference number: 5 (lower is better) Translates to: IQNISFLSLAFLLHF*EWTASLFRPLSRNK Trigger: CTTATTCCTGCTCAGTGGTCTAAAAAGCGATGCTGTCCATTCTCAGAAATGGAGCAGAAAGGCAAGAGAAAGGAAGCTGATATTTTGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS CCA 72 bp | ATTTGCAGATGGCAGTCTTCTTCCTGTGTGCTCATATaGCCTTTCCTCAGTGTGTGGGCTCCGTTCCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: ICRWQSSSCVLI*PFLSVWAPFLH Trigger: ATGAAGGAACGGAGCCCACACACTGAGGAAAGGCCATATGAGCACACAGGAAGAAGACTGCCATCTGCAAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS GCA 72 bp | CTGGGTGGCTTAAACAACAGAAGCCCAAGTTCGGGGTaGCAGCATGGTAAGTTCTTGATGATGATTGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: LGGLNNRSPSSG*QHGKFLMMIVF Trigger: GAAGACAATCATCATCAAGAACTTACCATGCTGGCACCCCGAACTTGGGCTTCTGTTGTTTAAGCCACCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS CCA 72 bp | TCAGCTTGGGCTGCTATAAGAAAATATCAGACTGGGTaGCTTAAACAACAGAAGCCCAAGTTCGGGGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: SAWAAIRKYQTG*LKQQKPKFGVP Trigger: TGGCACCCCGAACTTGGGCTTCTGTTGTTTAAGCCACCCAGTCTGATATTTTCTTATAGCAGCCCAAGCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS TCA 72 bp | ATCAGCTTCCTTTCTCTTGCCTTTCTGCTCCATTTCTaGGAATGGACAGCATCGCTTTTTAGACCACTGAGC | + |
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Preference number: 6 (lower is better) Translates to: ISFLSLAFLLHF*EWTASLFRPLS Trigger: GCTCAGTGGTCTAAAAAGCGATGCTGTCCATTCTCAGAAATGGAGCAGAAAGGCAAGAGAAAGGAAGCTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS CCA 72 bp | AAGTTCTTGATGATGATTGTCTTCCTGATTTGCAGATaGCAGTCTTCTTCCTGTGTGCTCATATGGCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: KFLMMIVFLICR*QSSSCVLIWPF Trigger: GAAAGGCCATATGAGCACACAGGAAGAAGACTGCCATCTGCAAATCAGGAAGACAATCATCATCAAGAACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS CAA 72 bp | TTGAGAAAATGTATATGCAAGTGGCTGGTCCAGTACTaGCCAGGTAGTGGACATTCAAAATATCAGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: LRKCICKWLVQY*PGSGHSKYQLP Trigger: AGGAAGCTGATATTTTGAATGTCCACTACCTGGCAAGTACTGGACCAGCCACTTGCATATACATTTTCTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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| CDS GCA 72 bp | ACATTCAAAATATCAGCTTCCTTTCTCTTGCCTTTCTaGTCCATTTCTGAGAATGGACAGCATCGCTTTTTA | + |
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Preference number: 6 (lower is better) Translates to: TFKISASFLLPF*SISENGQHRFL Trigger: TAAAAAGCGATGCTGTCCATTCTCAGAAATGGAGCAGAAAGGCAAGAGAAAGGAAGCTGATATTTTGAATGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000438824.1 |
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