Pregenerated sensors for LINC01800 (Homo sapiens)
Ensembl gene IDs: ENSG00000234572Ensembl transcript IDs: ENST00000445865.1
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGTTGGGCTCTGGGGAAAGAGAGATTTCTAGGGATGGTGGAAGATaGGGCCTCCCTGCCCTCTGGGACCCTGGGAGGCGTCACCATGGT | + |
|
Preference number: 5 (lower is better) Translates to: ELGSGEREISRDGGR*GLPALWDPGRRHHG Trigger: ACCATGGTGACGCCTCCCAGGGTCCCAGAGGGCAGGGAGGCCTCATCTTCCACCATCCCTAGAAATCTCTCTTTCCCCAGAGCCCAACTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS GCA 90 bp | TGCATGACCCTGGGGCTGGCACAGCTGCTCATCAGGCATCCAGGCTaGTTCTTTCATTTTACTGTACCATCCTCAGCGCAGGCCTTTAGT | + |
|
Preference number: 5 (lower is better) Translates to: CMTLGLAQLLIRHPG*FFHFTVPSSAQAFS Trigger: ACTAAAGGCCTGCGCTGAGGATGGTACAGTAAAATGAAAGAAGCAGCCTGGATGCCTGATGAGCAGCTGTGCCAGCCCCAGGGTCATGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CCA 90 bp | CCCAAGGCCCCTCTATTCTTCTTGCTCACATTGCTCCAACCACGTTaGCCTTCACGGTGTTTCTTAAGCATAAGGAGCACATTTCTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: PKAPLFFLLTLLQPR*PSRCFLSIRSTFLP Trigger: AGGCAGAAATGTGCTCCTTATGCTTAAGAAACACCGTGAAGGCCAACGTGGTTGGAGCAATGTGAGCAAGAAGAATAGAGGGGCCTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS GCA 90 bp | GTAGGGAGCACATTTAGTAACCCTAACAGAGTGTTGGAAAAGGCTTaGCTGGAAAGGGTTAACCACAGAGCTTTAGAAGGAGTTGGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: VGSTFSNPNRVLEKA*LERVNHRALEGVGL Trigger: GAGCCCAACTCCTTCTAAAGCTCTGTGGTTAACCCTTTCCAGGCAAGCCTTTTCCAACACTCTGTTAGGGTTACTAAATGTGCTCCCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CCA 90 bp | GATAGCTGCACTCCAGTGTGGAGAGCCTTAAACTGGATTTTACTGTaGGCTGCAGACACAGTTTGCCATAACCTTTGGTGTAACAGACAC | + |
|
Preference number: 5 (lower is better) Translates to: DSCTPVWRALNWILL*AADTVCHNLWCNRH Trigger: GTGTCTGTTACACCAAAGGTTATGGCAAACTGTGTCTGCAGCCCACAGTAAAATCCAGTTTAAGGCTCTCCACACTGGAGTGCAGCTATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CCA 90 bp | GCTGAAAAACTGGATAGCTGCACTCCAGTGTGGAGAGCCTTAAACTaGATTTTACTGTGGGCTGCAGACACAGTTTGCCATAACCTTTGG | + |
|
Preference number: 5 (lower is better) Translates to: AEKLDSCTPVWRALN*ILLWAADTVCHNLW Trigger: CCAAAGGTTATGGCAAACTGTGTCTGCAGCCCACAGTAAAATCCAGTTTAAGGCTCTCCACACTGGAGTGCAGCTATCCAGTTTTTCAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CCA 90 bp | TCTAGGTATGGAGGACTTGGCAGAGAGCATGGCAGACAGTGTCTCTaGTCTAATGAGCACAGCAGGCAGGAATCAAGGAAGCAAATAAAT | + |
|
Preference number: 5 (lower is better) Translates to: SRYGGLGREHGRQCL*SNEHSRQESRKQIN Trigger: ATTTATTTGCTTCCTTGATTCCTGCCTGCTGTGCTCATTAGACCAGAGACACTGTCTGCCATGCTCTCTGCCAAGTCCTCCATACCTAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS TCA 90 bp | AACCTTTGGTGTAACAGACACTTAAAGTCAAGGTGCCTTGATCCATaGGGACTCAGCTACCTATGTTCCCAAGGCCCCTCTATTCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: NLWCNRHLKSRCLDP*GLSYLCSQGPSILL Trigger: AAGAAGAATAGAGGGGCCTTGGGAACATAGGTAGCTGAGTCCTCATGGATCAAGGCACCTTGACTTTAAGTGTCTGTTACACCAAAGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS TCA 90 bp | CAAGGGCTTTGGTCAGACAAGACTACCTCTCTGACATATGTAGGTTaGTATTATTCTAAAATATGTTGTGCATTTCATCTTCCTGGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: QGLWSDKTTSLTYVG*YYSKICCAFHLPGE Trigger: TTCTCCAGGAAGATGAAATGCACAACATATTTTAGAATAATATCAACCTACATATGTCAGAGAGGTAGTCTTGTCTGACCAAAGCCCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 72 bp | GCACCTGGAACCCCGCCCCTCACCAGCTCAAGGGCTTaGGTCAGACAAGACTACCTCTCTGACATATGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: APGTPPLTSSRA*VRQDYLSDICR Trigger: CCTACATATGTCAGAGAGGTAGTCTTGTCTGACCAAAGCCCTTGAGCTGGTGAGGGGCGGGGTTCCAGGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS GCA 72 bp | CTGGGGCTGGCACAGCTGCTCATCAGGCATCCAGGCTaGTTCTTTCATTTTACTGTACCATCCTCAGCGCAG | + |
|
Preference number: 6 (lower is better) Translates to: LGLAQLLIRHPG*FFHFTVPSSAQ Trigger: CTGCGCTGAGGATGGTACAGTAAAATGAAAGAAGCAGCCTGGATGCCTGATGAGCAGCTGTGCCAGCCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CCA 72 bp | CACCTGGAACCCCGCCCCTCACCAGCTCAAGGGCTTTaGTCAGACAAGACTACCTCTCTGACATATGTAGGT | + |
|
Preference number: 6 (lower is better) Translates to: HLEPRPSPAQGL*SDKTTSLTYVG Trigger: ACCTACATATGTCAGAGAGGTAGTCTTGTCTGACCAAAGCCCTTGAGCTGGTGAGGGGCGGGGTTCCAGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CCA 72 bp | GTGACAGAAGCCAGTCAGCAACGTCGTGACAGAGCCTaGACTTCTTCGTGCTTGTCTCCACATATCCAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: VTEASQQRRDRA*TSSCLSPHIQP Trigger: TGGCTGGATATGTGGAGACAAGCACGAAGAAGTCCAGGCTCTGTCACGACGTTGCTGACTGGCTTCTGTCAC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS GCA 72 bp | CAGCTACCTATGTTCCCAAGGCCCCTCTATTCTTCTTaGTCACATTGCTCCAACCACGTTGGCCTTCACGGT | + |
|
Preference number: 6 (lower is better) Translates to: QLPMFPRPLYSS*SHCSNHVGLHG Trigger: ACCGTGAAGGCCAACGTGGTTGGAGCAATGTGAGCAAGAAGAATAGAGGGGCCTTGGGAACATAGGTAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 72 bp | TCAGCTACCTATGTTCCCAAGGCCCCTCTATTCTTCTaGCTCACATTGCTCCAACCACGTTGGCCTTCACGG | + |
|
Preference number: 6 (lower is better) Translates to: SATYVPKAPLFF*LTLLQPRWPSR Trigger: CCGTGAAGGCCAACGTGGTTGGAGCAATGTGAGCAAGAAGAATAGAGGGGCCTTGGGAACATAGGTAGCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 90 bp | TCCCAAGGCCCCTCTATTCTTCTTGCTCACATTGCTCCAACCACGTaGGCCTTCACGGTGTTTCTTAAGCATAAGGAGCACATTTCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: SQGPSILLAHIAPTT*AFTVFLKHKEHISA Trigger: GGCAGAAATGTGCTCCTTATGCTTAAGAAACACCGTGAAGGCCAACGTGGTTGGAGCAATGTGAGCAAGAAGAATAGAGGGGCCTTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 90 bp | CATGAGGACTCAGCTACCTATGTTCCCAAGGCCCCTCTATTCTTCTaGCTCACATTGCTCCAACCACGTTGGCCTTCACGGTGTTTCTTA | + |
|
Preference number: 6 (lower is better) Translates to: HEDSATYVPKAPLFF*LTLLQPRWPSRCFL Trigger: TAAGAAACACCGTGAAGGCCAACGTGGTTGGAGCAATGTGAGCAAGAAGAATAGAGGGGCCTTGGGAACATAGGTAGCTGAGTCCTCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CCA 72 bp | CTGGATAGCTGCACTCCAGTGTGGAGAGCCTTAAACTaGATTTTACTGTGGGCTGCAGACACAGTTTGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: LDSCTPVWRALN*ILLWAADTVCH Trigger: ATGGCAAACTGTGTCTGCAGCCCACAGTAAAATCCAGTTTAAGGCTCTCCACACTGGAGTGCAGCTATCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 90 bp | TCAGCTACCTATGTTCCCAAGGCCCCTCTATTCTTCTTGCTCACATaGCTCCAACCACGTTGGCCTTCACGGTGTTTCTTAAGCATAAGG | + |
|
Preference number: 6 (lower is better) Translates to: SATYVPKAPLFFLLT*LQPRWPSRCFLSIR Trigger: CCTTATGCTTAAGAAACACCGTGAAGGCCAACGTGGTTGGAGCAATGTGAGCAAGAAGAATAGAGGGGCCTTGGGAACATAGGTAGCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS TCA 72 bp | TGTAACAGACACTTAAAGTCAAGGTGCCTTGATCCATaGGGACTCAGCTACCTATGTTCCCAAGGCCCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: CNRHLKSRCLDP*GLSYLCSQGPS Trigger: AGAGGGGCCTTGGGAACATAGGTAGCTGAGTCCTCATGGATCAAGGCACCTTGACTTTAAGTGTCTGTTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 72 bp | CCCTCTATTCTTCTTGCTCACATTGCTCCAACCACGTaGGCCTTCACGGTGTTTCTTAAGCATAAGGAGCAC | + |
|
Preference number: 6 (lower is better) Translates to: PSILLAHIAPTT*AFTVFLKHKEH Trigger: GTGCTCCTTATGCTTAAGAAACACCGTGAAGGCCAACGTGGTTGGAGCAATGTGAGCAAGAAGAATAGAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 72 bp | TATGTTCCCAAGGCCCCTCTATTCTTCTTGCTCACATaGCTCCAACCACGTTGGCCTTCACGGTGTTTCTTA | + |
|
Preference number: 6 (lower is better) Translates to: YVPKAPLFFLLT*LQPRWPSRCFL Trigger: TAAGAAACACCGTGAAGGCCAACGTGGTTGGAGCAATGTGAGCAAGAAGAATAGAGGGGCCTTGGGAACATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 90 bp | AAAATCAGGAAAACAAGCTTTGCCAGAAGCGTCACTAGGCTGAACTaGACTATTTCTCACAGTCCATGTGGTGTCACACGCGCACCTCTA | + |
|
Preference number: 6 (lower is better) Translates to: KIRKTSFARSVTRLN*TISHSPCGVTRAPL Trigger: TAGAGGTGCGCGTGTGACACCACATGGACTGTGAGAAATAGTCAAGTTCAGCCTAGTGACGCTTCTGGCAAAGCTTGTTTTCCTGATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 72 bp | AAAACAAGCTTTGCCAGAAGCGTCACTAGGCTGAACTaGACTATTTCTCACAGTCCATGTGGTGTCACACGC | + |
|
Preference number: 6 (lower is better) Translates to: KTSFARSVTRLN*TISHSPCGVTR Trigger: GCGTGTGACACCACATGGACTGTGAGAAATAGTCAAGTTCAGCCTAGTGACGCTTCTGGCAAAGCTTGTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CAA 90 bp | CCTAGTCCATTTGTAGGGAGCACATTTAGTAACCCTAACAGAGTGTaGGAAAAGGCTTGCCTGGAAAGGGTTAACCACAGAGCTTTAGAA | + |
|
Preference number: 6 (lower is better) Translates to: PSPFVGSTFSNPNRV*EKACLERVNHRALE Trigger: TTCTAAAGCTCTGTGGTTAACCCTTTCCAGGCAAGCCTTTTCCAACACTCTGTTAGGGTTACTAAATGTGCTCCCTACAAATGGACTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS TCA 72 bp | TATTTGGCTACAAATAGGAGAAAACCAGAACCACAATaGTTGACACTGATTTGCATGACCCTGGGGCTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: YLATNRRKPEPQ*LTLICMTLGLA Trigger: TGCCAGCCCCAGGGTCATGCAAATCAGTGTCAATCATTGTGGTTCTGGTTTTCTCCTATTTGTAGCCAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS GCA 72 bp | ACATTTAGTAACCCTAACAGAGTGTTGGAAAAGGCTTaGCTGGAAAGGGTTAACCACAGAGCTTTAGAAGGA | + |
|
Preference number: 6 (lower is better) Translates to: TFSNPNRVLEKA*LERVNHRALEG Trigger: TCCTTCTAAAGCTCTGTGGTTAACCCTTTCCAGGCAAGCCTTTTCCAACACTCTGTTAGGGTTACTAAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CCA 72 bp | AGAGAAAGGGAAATGCTTTCTCCAGCCAGGGTAGCATaGGAAGTTATTGGAAAAGCAAGGACTAGAACTTAT | + |
|
Preference number: 6 (lower is better) Translates to: REREMLSPARVA*EVIGKARTRTY Trigger: ATAAGTTCTAGTCCTTGCTTTTCCAATAACTTCCCATGCTACCCTGGCTGGAGAAAGCATTTCCCTTTCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS TCA 72 bp | GGGCTTTTTGTTTCTTCAGTTCTGGTGAGGGTCAGTTaGACTAGATTATGGAGAAATGAGGTACAGAGAAAG | + |
|
Preference number: 6 (lower is better) Translates to: GLFVSSVLVRVS*TRLWRNEVQRK Trigger: CTTTCTCTGTACCTCATTTCTCCATAATCTAGTTCAACTGACCCTCACCAGAACTGAAGAAACAAAAAGCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS CCA 72 bp | ATCCAAGCAACTTACAGTAGAAACCCCTGCCTGAAATaGACAACTTCTCTGACTGATCTATTTCTAGGACTT | + |
|
Preference number: 6 (lower is better) Translates to: IQATYSRNPCLK*TTSLTDLFLGL Trigger: AAGTCCTAGAAATAGATCAGTCAGAGAAGTTGTCCATTTCAGGCAGGGGTTTCTACTGTAAGTTGCTTGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||
| CDS TCA 72 bp | ATCTCTGAAATCAAGGTGGATGCATCTTACAATCAGTaGTATGTCTTGAGAGCATTTTCTTCTCTCATAGTG | + |
|
Preference number: 6 (lower is better) Translates to: ISEIKVDASYNQ*YVLRAFSSLIV Trigger: CACTATGAGAGAAGAAAATGCTCTCAAGACATATCACTGATTGTAAGATGCATCCACCTTGATTTCAGAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445865.1 |
||