Pregenerated sensors for LINC01798 (Homo sapiens)
Ensembl gene IDs: ENSG00000232046Ensembl transcript IDs: ENST00000412944.1, ENST00000423168.5, ENST00000428590.5, ENST00000433396.5, ENST00000435389.6, ENST00000653254.1
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTCAATCAAGTTCAAACACAGCAGTGTGTGCTGACTTTGCACGCATaGTGGCATGGGGGCTCTACTGTGGTGGAAAACAGGGAGGGAGGA | + |
|
Preference number: 5 (lower is better) Translates to: VNQVQTQQCVLTLHA*WHGGSTVVENREGG Trigger: TCCTCCCTCCCTGTTTTCCACCACAGTAGAGCCCCCATGCCACCATGCGTGCAAAGTCAGCACACACTGCTGTGTTTGAACTTGATTGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS TCA 90 bp | AAGTGCTGCGTGAGGTCAATCAAGTTCAAACACAGCAGTGTGTGCTaGCTTTGCACGCATGGTGGCATGGGGGCTCTACTGTGGTGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: KCCVRSIKFKHSSVC*LCTHGGMGALLWWK Trigger: TTTCCACCACAGTAGAGCCCCCATGCCACCATGCGTGCAAAGTCAGCACACACTGCTGTGTTTGAACTTGATTGACCTCACGCAGCACTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CCA 90 bp | AGTTCAAACACAGCAGTGTGTGCTGACTTTGCACGCATGGTGGCATaGGGGCTCTACTGTGGTGGAAAACAGGGAGGGAGGAAAGTATTC | + |
|
Preference number: 5 (lower is better) Translates to: SSNTAVCADFARMVA*GLYCGGKQGGRKVF Trigger: GAATACTTTCCTCCCTCCCTGTTTTCCACCACAGTAGAGCCCCCATGCCACCATGCGTGCAAAGTCAGCACACACTGCTGTGTTTGAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CCA 90 bp | AATCAAGTTCAAACACAGCAGTGTGTGCTGACTTTGCACGCATGGTaGCATGGGGGCTCTACTGTGGTGGAAAACAGGGAGGGAGGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: NQVQTQQCVLTLHAW*HGGSTVVENREGGK Trigger: CTTTCCTCCCTCCCTGTTTTCCACCACAGTAGAGCCCCCATGCCACCATGCGTGCAAAGTCAGCACACACTGCTGTGTTTGAACTTGATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS GCA 90 bp | TCCTCCATGCGTCCCCCTGATGGCTTCTCCTCTGATAATAAGAAGTaGAGGGCCTCTGATAATTTGCCTGTCACTGTTGAGTGCAGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: SSMRPPDGFSSDNKK*RASDNLPVTVECSS Trigger: TGAGCTGCACTCAACAGTGACAGGCAAATTATCAGAGGCCCTGCACTTCTTATTATCAGAGGAGAAGCCATCAGGGGGACGCATGGAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000423168.5 ENST00000435389.6 |
||
| CDS TCA 90 bp | TGGGTCCAGAGCTTGATCATCTGTCATTCTCAAGTCTTTAAGCCCTaGGGGGTCATTTGTGCCAGATCGGGAAAGAAGTATGCCCCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: WVQSLIICHSQVFKP*GVICARSGKKYAPR Trigger: TCTTGGGGCATACTTCTTTCCCGATCTGGCACAAATGACCCCTCAGGGCTTAAAGACTTGAGAATGACAGATGATCAAGCTCTGGACCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433396.5 |
||
| CDS CCA 90 bp | GACAGGGGACTGGAGGAGGAACACCATTATGCATTGTTATCAGCGTaGTGTAATTTGACTGTTGACAAAGTATCCGTGGCAGTGCGAATG | + |
|
Preference number: 5 (lower is better) Translates to: DRGLEEEHHYALLSA*CNLTVDKVSVAVRM Trigger: CATTCGCACTGCCACGGATACTTTGTCAACAGTCAAATTACACCACGCTGATAACAATGCATAATGGTGTTCCTCCTCCAGTCCCCTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS TCA 90 bp | AGCTTACACCCCCTTTGTTTGGCTCAAGAATTGCCTGGCTTTGTATaGGGTTGTGAAATCAAGGTCCAGTTCTTATCGATGTGCCTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SLHPLCLAQELPGFV*GCEIKVQFLSMCLC Trigger: GCAGAGGCACATCGATAAGAACTGGACCTTGATTTCACAACCTCATACAAAGCCAGGCAATTCTTGAGCCAAACAAAGGGGGTGTAAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000423168.5 ENST00000433396.5 ENST00000435389.6 |
||
| CDS GCA 90 bp | ATGGCTTCTCCTCTGATAATAAGAAGTGCAGGGCCTCTGATAATTTaGCTGTCACTGTTGAGTGCAGCTCAGAGAGAGTTGGCCAAATTG | + |
|
Preference number: 5 (lower is better) Translates to: MASPLIIRSAGPLII*LSLLSAAQRELAKL Trigger: CAATTTGGCCAACTCTCTCTGAGCTGCACTCAACAGTGACAGGCAAATTATCAGAGGCCCTGCACTTCTTATTATCAGAGGAGAAGCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000423168.5 ENST00000435389.6 |
||
| CDS CCA 90 bp | CAGTTCGAATGCTCCATAGCCACATGGGGCTGGTGGCTACCATATTaGATGTCACATTTCATACAGTTTCTCCTCTCCTCTGATCAAACT | + |
|
Preference number: 5 (lower is better) Translates to: QFECSIATWGWWLPY*MSHFIQFLLSSDQT Trigger: AGTTTGATCAGAGGAGAGGAGAAACTGTATGAAATGTGACATCCAATATGGTAGCCACCAGCCCCATGTGGCTATGGAGCATTCGAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS TCA 90 bp | CCCCCTTTGTTTGGCTCAAGAATTGCCTGGCTTTGTATGAGGTTGTaGAATCAAGGTCCAGTTCTTATCGATGTGCCTCTGCTCATTCTA | + |
|
Preference number: 5 (lower is better) Translates to: PPLFGSRIAWLCMRL*NQGPVLIDVPLLIL Trigger: TAGAATGAGCAGAGGCACATCGATAAGAACTGGACCTTGATTTCACAACCTCATACAAAGCCAGGCAATTCTTGAGCCAAACAAAGGGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000423168.5 ENST00000433396.5 ENST00000435389.6 |
||
| CDS CCA 90 bp | TTGCATCGGCCCAAAGCCGCAAAGCAGGCAATCACGAAGAGTATTTaGGTAAGAATGCAATCTCTCTGTTCCAGTGTGTTCAATTTGACT | + |
|
Preference number: 5 (lower is better) Translates to: LHRPKAAKQAITKSI*VRMQSLCSSVFNLT Trigger: AGTCAAATTGAACACACTGGAACAGAGAGATTGCATTCTTACCCAAATACTCTTCGTGATTGCCTGCTTTGCGGCTTTGGGCCGATGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433396.5 |
||
| CDS TCA 90 bp | TACCTAATAAACCAGACTCTGTGGGGCAGCCAAGTTGGTTTTGCTTaGACTGCAGGTGTAAGACTCAGCACGAAACATAAATCAACGTCT | + |
|
Preference number: 5 (lower is better) Translates to: YLINQTLWGSQVGFA*TAGVRLSTKHKSTS Trigger: AGACGTTGATTTATGTTTCGTGCTGAGTCTTACACCTGCAGTTCAAGCAAAACCAACTTGGCTGCCCCACAGAGTCTGGTTTATTAGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CCA 90 bp | TCTGCCGTAACTAGCAAACGTCACCATGGTAAACGTGGATTTCAATaGAAGGTTTTGCAGTGCCTAGTGATAATTCTGCCAGTTCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SAVTSKRHHGKRGFQ*KVLQCLVIILPVLF Trigger: GAAGAGAACTGGCAGAATTATCACTAGGCACTGCAAAACCTTCCATTGAAATCCACGTTTACCATGGTGACGTTTGCTAGTTACGGCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412944.1 ENST00000653254.1 |
||
| CDS TCA 90 bp | ATCAAGAAGATGCTTAGCTGTGCAACACTGCATCTCGAGCAGATTTaGATCAACATTGCCTTAAGGGGACACACACACATACCAAAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: IKKMLSCATLHLEQI*INIALRGHTHIPKE Trigger: TTCTTTTGGTATGTGTGTGTGTCCCCTTAAGGCAATGTTGATTCAAATCTGCTCGAGATGCAGTGTTGCACAGCTAAGCATCTTCTTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS TCA 90 bp | TTCCAGTTAATTACGGTTTTAATTACATGGCTTCTTGCGACTCCTTaGTACCTAATAAACCAGACTCTGTGGGGCAGCCAAGTTGGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: FQLITVLITWLLATP*YLINQTLWGSQVGF Trigger: AAAACCAACTTGGCTGCCCCACAGAGTCTGGTTTATTAGGTATCAAGGAGTCGCAAGAAGCCATGTAATTAAAACCGTAATTAACTGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS GCA 90 bp | AAAATAAATGAAATAGCTTACACCCCCTTTGTTTGGCTCAAGAATTaGCTGGCTTTGTATGAGGTTGTGAAATCAAGGTCCAGTTCTTAT | + |
|
Preference number: 5 (lower is better) Translates to: KINEIAYTPFVWLKN*LALYEVVKSRSSSY Trigger: ATAAGAACTGGACCTTGATTTCACAACCTCATACAAAGCCAGGCAATTCTTGAGCCAAACAAAGGGGGTGTAAGCTATTTCATTTATTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000423168.5 ENST00000433396.5 ENST00000435389.6 |
||
| CDS CCA 90 bp | CATGATGGCACATTGTCTTGCTGGACAAATACTAAAATTGCAAATTaGCTTGATCAGGAAGTTTTACGTATGAAGATAACACTGTATCCT | + |
|
Preference number: 5 (lower is better) Translates to: HDGTLSCWTNTKIAN*LDQEVLRMKITLYP Trigger: AGGATACAGTGTTATCTTCATACGTAAAACTTCCTGATCAAGCCAATTTGCAATTTTAGTATTTGTCCAGCAAGACAATGTGCCATCATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS TCA 90 bp | GGAGCTAAATTACTTGTTACCTGCTGGCATTTATTTATATGGCATTaGATTATAAAGCTTTGCTATTGTCATGCCTTGGGCGAATTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: GAKLLVTCWHLFIWH*IIKLCYCHALGELF Trigger: AAACAATTCGCCCAAGGCATGACAATAGCAAAGCTTTATAATTCAATGCCATATAAATAAATGCCAGCAGGTAACAAGTAATTTAGCTCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS CCA 72 bp | ACAGCAGTGTGTGCTGACTTTGCACGCATGGTGGCATaGGGGCTCTACTGTGGTGGAAAACAGGGAGGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: TAVCADFARMVA*GLYCGGKQGGR Trigger: CCTCCCTCCCTGTTTTCCACCACAGTAGAGCCCCCATGCCACCATGCGTGCAAAGTCAGCACACACTGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CAA 72 bp | CCAGGGAAGGAAAGGCACCTTAGAAGACTCGCCATTTaGCAGCTTGCATCGGCCCAAAGCCGCAAAGCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: PGKERHLRRLAI*QLASAQSRKAG Trigger: GCCTGCTTTGCGGCTTTGGGCCGATGCAAGCTGCAAAATGGCGAGTCTTCTAAGGTGCCTTTCCTTCCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000423168.5 ENST00000433396.5 ENST00000435389.6 |
||
| CDS GCA 72 bp | CAGGGAAGGAAAGGCACCTTAGAAGACTCGCCATTTTaGAGCTTGCATCGGCCCAAAGCCGCAAAGCAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: QGRKGTLEDSPF*SLHRPKAAKQA Trigger: TGCCTGCTTTGCGGCTTTGGGCCGATGCAAGCTGCAAAATGGCGAGTCTTCTAAGGTGCCTTTCCTTCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000423168.5 ENST00000433396.5 ENST00000435389.6 |
||
| CDS CAA 90 bp | CTGCGTGAGGTCAATCAAGTTCAAACACAGCAGTGTGTGCTGACTTaGCACGCATGGTGGCATGGGGGCTCTACTGTGGTGGAAAACAGG | + |
|
Preference number: 6 (lower is better) Translates to: LREVNQVQTQQCVLT*HAWWHGGSTVVENR Trigger: CCTGTTTTCCACCACAGTAGAGCCCCCATGCCACCATGCGTGCAAAGTCAGCACACACTGCTGTGTTTGAACTTGATTGACCTCACGCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS TCA 72 bp | GTGAGGTCAATCAAGTTCAAACACAGCAGTGTGTGCTaGCTTTGCACGCATGGTGGCATGGGGGCTCTACTG | + |
|
Preference number: 6 (lower is better) Translates to: VRSIKFKHSSVC*LCTHGGMGALL Trigger: CAGTAGAGCCCCCATGCCACCATGCGTGCAAAGTCAGCACACACTGCTGTGTTTGAACTTGATTGACCTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CAA 90 bp | AGCCCCTCTCCTGACAGGGGACTGGAGGAGGAACACCATTATGCATaGTTATCAGCGTGGTGTAATTTGACTGTTGACAAAGTATCCGTG | + |
|
Preference number: 6 (lower is better) Translates to: SPSPDRGLEEEHHYA*LSAWCNLTVDKVSV Trigger: CACGGATACTTTGTCAACAGTCAAATTACACCACGCTGATAACAATGCATAATGGTGTTCCTCCTCCAGTCCCCTGTCAGGAGAGGGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS CCA 72 bp | CCCAAAGCCGCAAAGCAGGCAATCACGAAGAGTATTTaGGTAAGAATGCAATTTGGTTTGGGTCTCCCAGTC | + |
|
Preference number: 6 (lower is better) Translates to: PKAAKQAITKSI*VRMQFGLGLPV Trigger: GACTGGGAGACCCAAACCAAATTGCATTCTTACCCAAATACTCTTCGTGATTGCCTGCTTTGCGGCTTTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000435389.6 ENST00000653254.1 |
||
| CDS CAA 72 bp | GGAAACCCAGCAGCATCTGATGGCATTATGAGCAGCTaGCAATTTAGCCTCAGCAGCAGGAAAATCTGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: GNPAASDGIMSS*QFSLSSRKICS Trigger: ACTGCAGATTTTCCTGCTGCTGAGGCTAAATTGCAAGCTGCTCATAATGCCATCAGATGCTGCTGGGTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412944.1 ENST00000653254.1 |
||
| CDS CAA 72 bp | GCCCAAAGCCGCAAAGCAGGCAATCACGAAGAGTATTaGGGTAAGAATGCAATTTGGTTTGGGTCTCCCAGT | + |
|
Preference number: 6 (lower is better) Translates to: AQSRKAGNHEEY*GKNAIWFGSPS Trigger: ACTGGGAGACCCAAACCAAATTGCATTCTTACCCAAATACTCTTCGTGATTGCCTGCTTTGCGGCTTTGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS CAA 72 bp | ACCCGGCCTTGTCTGACTTCTTCATGTATCCGTAAGTaGGTTCAGAAATCCCAAAGCCGCAAAGCAGGCAAT | + |
|
Preference number: 6 (lower is better) Translates to: TRPCLTSSCIRK*VQKSQSRKAGN Trigger: ATTGCCTGCTTTGCGGCTTTGGGATTTCTGAACCAACTTACGGATACATGAAGAAGTCAGACAAGGCCGGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CAA 72 bp | ATGCTCCATAGCCACATGGGGCTGGTGGCTACCATATaGGATGTCACATTTCATACAGTTTCTCCTCTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: MLHSHMGLVATI*DVTFHTVSPLL Trigger: GAGGAGAGGAGAAACTGTATGAAATGTGACATCCAATATGGTAGCCACCAGCCCCATGTGGCTATGGAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CAA 90 bp | GATGGCTTCTCCTCTGATAATAAGAAGTGCAGGGCCTCTGATAATTaGCCTGTCACTGTTGAGTGCAGCTCAGAGAGAGTTGGCCAAATT | + |
|
Preference number: 6 (lower is better) Translates to: DGFSSDNKKCRASDN*PVTVECSSERVGQI Trigger: AATTTGGCCAACTCTCTCTGAGCTGCACTCAACAGTGACAGGCAAATTATCAGAGGCCCTGCACTTCTTATTATCAGAGGAGAAGCCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000423168.5 ENST00000435389.6 |
||
| CDS CAA 90 bp | CTTGCATCGGCCCAAAGCCGCAAAGCAGGCAATCACGAAGAGTATTaGGGTAAGAATGCAATCTCTCTGTTCCAGTGTGTTCAATTTGAC | + |
|
Preference number: 6 (lower is better) Translates to: LASAQSRKAGNHEEY*GKNAISLFQCVQFD Trigger: GTCAAATTGAACACACTGGAACAGAGAGATTGCATTCTTACCCAAATACTCTTCGTGATTGCCTGCTTTGCGGCTTTGGGCCGATGCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433396.5 |
||
| CDS CAA 90 bp | CTGGAGGAGGAACACCATTATGCATTGTTATCAGCGTGGTGTAATTaGACTGTTGACAAAGTATCCGTGGCAGTGCGAATGAGCGCAGTT | + |
|
Preference number: 6 (lower is better) Translates to: LEEEHHYALLSAWCN*TVDKVSVAVRMSAV Trigger: AACTGCGCTCATTCGCACTGCCACGGATACTTTGTCAACAGTCAAATTACACCACGCTGATAACAATGCATAATGGTGTTCCTCCTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS TCA 72 bp | AACCAGACTCTGTGGGGCAGCCAAGTTGGTTTTGCTTaGACTGCAGGTGTAAGACTCAGCACGAAACATAAA | + |
|
Preference number: 6 (lower is better) Translates to: NQTLWGSQVGFA*TAGVRLSTKHK Trigger: TTTATGTTTCGTGCTGAGTCTTACACCTGCAGTTCAAGCAAAACCAACTTGGCTGCCCCACAGAGTCTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS GCA 72 bp | CCTCTGATAATAAGAAGTGCAGGGCCTCTGATAATTTaGCTGTCACTGTTGAGTGCAGCTCAGAGAGAGTTG | + |
|
Preference number: 6 (lower is better) Translates to: PLIIRSAGPLII*LSLLSAAQREL Trigger: CAACTCTCTCTGAGCTGCACTCAACAGTGACAGGCAAATTATCAGAGGCCCTGCACTTCTTATTATCAGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000423168.5 ENST00000435389.6 |
||
| CDS GCA 72 bp | AATAAACCAGACTCTGTGGGGCAGCCAAGTTGGTTTTaGTTGAACTGCAGGTGTAAGACTCAGCACGAAACA | + |
|
Preference number: 6 (lower is better) Translates to: NKPDSVGQPSWF*LNCRCKTQHET Trigger: TGTTTCGTGCTGAGTCTTACACCTGCAGTTCAAGCAAAACCAACTTGGCTGCCCCACAGAGTCTGGTTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CCA 72 bp | CTGTATCCTCTAGTCCACTTCCAAAAGGTGGACAGCTaGAGAGCAAAGATGACTTTCAGCTTTACCTTCACC | + |
|
Preference number: 6 (lower is better) Translates to: LYPLVHFQKVDS*RAKMTFSFTFT Trigger: GGTGAAGGTAAAGCTGAAAGTCATCTTTGCTCTCCAGCTGTCCACCTTTTGGAAGTGGACTAGAGGATACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS CCA 72 bp | ATACCTAATAAACCAGACTCTGTGGGGCAGCCAAGTTaGTTTTGCTTGAACTGCAGGTGTAAGACTCAGCAC | + |
|
Preference number: 6 (lower is better) Translates to: IPNKPDSVGQPS*FCLNCRCKTQH Trigger: GTGCTGAGTCTTACACCTGCAGTTCAAGCAAAACCAACTTGGCTGCCCCACAGAGTCTGGTTTATTAGGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CAA 72 bp | GCCCAAAGCCGCAAAGCAGGCAATCACGAAGAGTATTaGGGTAAGAATGCAATCTCTCTGTTCCAGTGTGTT | + |
|
Preference number: 6 (lower is better) Translates to: AQSRKAGNHEEY*GKNAISLFQCV Trigger: AACACACTGGAACAGAGAGATTGCATTCTTACCCAAATACTCTTCGTGATTGCCTGCTTTGCGGCTTTGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433396.5 |
||
| CDS CAA 72 bp | TCCCAAAGCCGCAAAGCAGGCAATCACGAAGAGTATTaGGGTAAGAATGCAATTTGGTTTGGGTCTCCCAGT | + |
|
Preference number: 6 (lower is better) Translates to: SQSRKAGNHEEY*GKNAIWFGSPS Trigger: ACTGGGAGACCCAAACCAAATTGCATTCTTACCCAAATACTCTTCGTGATTGCCTGCTTTGCGGCTTTGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS GCA 72 bp | CATGGTAAACGTGGATTTCAATGGAAGGTTTTGCAGTaGCTAGTGATAATTCTGCCAGTTCTCTTCCCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: HGKRGFQWKVLQ*LVIILPVLFPS Trigger: GGAGGGGAAGAGAACTGGCAGAATTATCACTAGGCACTGCAAAACCTTCCATTGAAATCCACGTTTACCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000412944.1 ENST00000653254.1 |
||
| CDS GCA 72 bp | ACAGTCTCAAATATCAGGCTCAAGCCCATGTCCCTTTaGCAGGTAGGAGCAGTAAATTTTTCACTGGGAGAA | + |
|
Preference number: 6 (lower is better) Translates to: TVSNIRLKPMSL*QVGAVNFSLGE Trigger: TTCTCCCAGTGAAAAATTTACTGCTCCTACCTGGCAAAGGGACATGGGCTTGAGCCTGATATTTGAGACTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000428590.5 |
||
| CDS CAA 72 bp | TCCTCTGATAATAAGAAGTGCAGGGCCTCTGATAATTaGCCTGTCACTGTTGAGTGCAGCTCAGAGAGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: SSDNKKCRASDN*PVTVECSSERV Trigger: AACTCTCTCTGAGCTGCACTCAACAGTGACAGGCAAATTATCAGAGGCCCTGCACTTCTTATTATCAGAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000423168.5 ENST00000435389.6 |
||
| CDS CAA 72 bp | CCTGACAGGGGACTGGAGGAGGAACACCATTATGCATaGTTATCAGCGTGGTGTAATTTGACTGTTGACAAA | + |
|
Preference number: 6 (lower is better) Translates to: PDRGLEEEHHYA*LSAWCNLTVDK Trigger: TTTGTCAACAGTCAAATTACACCACGCTGATAACAATGCATAATGGTGTTCCTCCTCCAGTCCCCTGTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS CAA 90 bp | GAAATAGCTTACACCCCCTTTGTTTGGCTCAAGAATTGCCTGGCTTaGTATGAGGTTGTGAAATCAAGGTCCAGTTCTTATCGATGTGCC | + |
|
Preference number: 6 (lower is better) Translates to: EIAYTPFVWLKNCLA*YEVVKSRSSSYRCA Trigger: GGCACATCGATAAGAACTGGACCTTGATTTCACAACCTCATACAAAGCCAGGCAATTCTTGAGCCAAACAAAGGGGGTGTAAGCTATTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000423168.5 ENST00000433396.5 ENST00000435389.6 |
||
| CDS TCA 72 bp | TTTGGCTCAAGAATTGCCTGGCTTTGTATGAGGTTGTaGAATCAAGGTCCAGTTCTTATCGATGTGCCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: FGSRIAWLCMRL*NQGPVLIDVPL Trigger: CAGAGGCACATCGATAAGAACTGGACCTTGATTTCACAACCTCATACAAAGCCAGGCAATTCTTGAGCCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000423168.5 ENST00000433396.5 ENST00000435389.6 |
||
| CDS TCA 72 bp | AGCTTGATCATCTGTCATTCTCAAGTCTTTAAGCCCTaGGGGGTCATTTGTGCCAGATCGGGAAAGAAGTAT | + |
|
Preference number: 6 (lower is better) Translates to: SLIICHSQVFKP*GVICARSGKKY Trigger: ATACTTCTTTCCCGATCTGGCACAAATGACCCCTCAGGGCTTAAAGACTTGAGAATGACAGATGATCAAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000433396.5 |
||
| CDS TCA 72 bp | ATGCTTAGCTGTGCAACACTGCATCTCGAGCAGATTTaGATCAACATTGCCTTAAGGGGACACACACACATA | + |
|
Preference number: 6 (lower is better) Translates to: MLSCATLHLEQI*INIALRGHTHI Trigger: TATGTGTGTGTGTCCCCTTAAGGCAATGTTGATTCAAATCTGCTCGAGATGCAGTGTTGCACAGCTAAGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS GCA 72 bp | GAAATAGCTTACACCCCCTTTGTTTGGCTCAAGAATTaGCTGGCTTTGTATGAGGTTGTGAAATCAAGGTCC | + |
|
Preference number: 6 (lower is better) Translates to: EIAYTPFVWLKN*LALYEVVKSRS Trigger: GGACCTTGATTTCACAACCTCATACAAAGCCAGGCAATTCTTGAGCCAAACAAAGGGGGTGTAAGCTATTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000423168.5 ENST00000433396.5 ENST00000435389.6 |
||
| CDS CCA 72 bp | CCCAAAGCCGCAAAGCAGGCAATCACGAAGAGTATTTaGGTAAGAATGCAATATTGTACTTGGTTTGGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: PKAAKQAITKSI*VRMQYCTWFGS Trigger: AGACCCAAACCAAGTACAATATTGCATTCTTACCCAAATACTCTTCGTGATTGCCTGCTTTGCGGCTTTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412944.1 ENST00000428590.5 |
||
| CDS CCA 72 bp | CTGGAGGAGGAACACCATTATGCATTGTTATCAGCGTaGTGTAATTTGACTGTTGACAAAGTATCCGTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: LEEEHHYALLSA*CNLTVDKVSVA Trigger: TGCCACGGATACTTTGTCAACAGTCAAATTACACCACGCTGATAACAATGCATAATGGTGTTCCTCCTCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS CAA 72 bp | TCCCAAAGCCGCAAAGCAGGCAATCACGAAGAGTATTaGGGTAAGAATGCAATATTGTACTTGGTTTGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: SQSRKAGNHEEY*GKNAILYLVWV Trigger: GACCCAAACCAAGTACAATATTGCATTCTTACCCAAATACTCTTCGTGATTGCCTGCTTTGCGGCTTTGGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412944.1 ENST00000428590.5 |
||
| CDS TCA 72 bp | GGGAAAACAAAAATGAAGGCCCTGGGATTTCTGGCTTaGGTATTTGGAACCCATAAGTTGATGGGAGTTGTA | + |
|
Preference number: 6 (lower is better) Translates to: GKTKMKALGFLA*VFGTHKLMGVV Trigger: TACAACTCCCATCAACTTATGGGTTCCAAATACTCAAGCCAGAAATCCCAGGGCCTTCATTTTTGTTTTCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS TCA 72 bp | ATTACGGTTTTAATTACATGGCTTCTTGCGACTCCTTaGTACCTAATAAACCAGACTCTGTGGGGCAGCCAA | + |
|
Preference number: 6 (lower is better) Translates to: ITVLITWLLATP*YLINQTLWGSQ Trigger: TTGGCTGCCCCACAGAGTCTGGTTTATTAGGTATCAAGGAGTCGCAAGAAGCCATGTAATTAAAACCGTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CCA 72 bp | ACTAGCAAACGTCACCATGGTAAACGTGGATTTCAATaGAAGGTTTTGCAGTGCCTAGTGATAATTCTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: TSKRHHGKRGFQ*KVLQCLVIILP Trigger: TGGCAGAATTATCACTAGGCACTGCAAAACCTTCCATTGAAATCCACGTTTACCATGGTGACGTTTGCTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412944.1 ENST00000653254.1 |
||
| CDS CAA 72 bp | GAACACCATTATGCATTGTTATCAGCGTGGTGTAATTaGACTGTTGACAAAGTATCCGTGGCAGTGCGAATG | + |
|
Preference number: 6 (lower is better) Translates to: EHHYALLSAWCN*TVDKVSVAVRM Trigger: CATTCGCACTGCCACGGATACTTTGTCAACAGTCAAATTACACCACGCTGATAACAATGCATAATGGTGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS CAA 72 bp | AATTACGGTTTTAATTACATGGCTTCTTGCGACTCCTaGATACCTAATAAACCAGACTCTGTGGGGCAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: NYGFNYMASCDS*IPNKPDSVGQP Trigger: TGGCTGCCCCACAGAGTCTGGTTTATTAGGTATCAAGGAGTCGCAAGAAGCCATGTAATTAAAACCGTAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CAA 90 bp | TTTCCAGTTAATTACGGTTTTAATTACATGGCTTCTTGCGACTCCTaGATACCTAATAAACCAGACTCTGTGGGGCAGCCAAGTTGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: FPVNYGFNYMASCDS*IPNKPDSVGQPSWF Trigger: AAACCAACTTGGCTGCCCCACAGAGTCTGGTTTATTAGGTATCAAGGAGTCGCAAGAAGCCATGTAATTAAAACCGTAATTAACTGGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS CAA 90 bp | AGCTATTTATACAGTCTCAAATATCAGGCTCAAGCCCATGTCCCTTaGCCAGGTAGGAGCAGTAAATTTTTCACTGGGAGAAGAAAAATA | + |
|
Preference number: 6 (lower is better) Translates to: SYLYSLKYQAQAHVP*PGRSSKFFTGRRKI Trigger: TATTTTTCTTCTCCCAGTGAAAAATTTACTGCTCCTACCTGGCAAAGGGACATGGGCTTGAGCCTGATATTTGAGACTGTATAAATAGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000428590.5 |
||
| CDS TCA 72 bp | TCTTGCAATAACAATATTAATGCCGGGGTGAAAGCTTaGTTGGAGCTAAATTACTTGTTACCTGCTGGCATT | + |
|
Preference number: 6 (lower is better) Translates to: SCNNNINAGVKA*LELNYLLPAGI Trigger: AATGCCAGCAGGTAACAAGTAATTTAGCTCCAATCAAGCTTTCACCCCGGCATTAATATTGTTATTGCAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||
| CDS CCA 72 bp | ATCAAAATAAATGAAATAGCTTACACCCCCTTTGTTTaGCTCAAGAATTGCCTGGCTTTGTATGAGGTTGTG | + |
|
Preference number: 6 (lower is better) Translates to: IKINEIAYTPFV*LKNCLALYEVV Trigger: CACAACCTCATACAAAGCCAGGCAATTCTTGAGCCAAACAAAGGGGGTGTAAGCTATTTCATTTATTTTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000423168.5 ENST00000433396.5 ENST00000435389.6 |
||
| CDS GCA 72 bp | TTTCCAGTTAATTACGGTTTTAATTACATGGCTTCTTaGGACTCCTTGATACCTAATAAACCAGACTCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: FPVNYGFNYMAS*DSLIPNKPDSV Trigger: CACAGAGTCTGGTTTATTAGGTATCAAGGAGTCGCAAGAAGCCATGTAATTAAAACCGTAATTAACTGGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653254.1 |
||
| CDS GCA 72 bp | TATATGGCATTGAATTATAAAGCTTTGCTATTGTCATaGCTTGGGCGAATTGTTTATGACACCAGTAATAGG | + |
|
Preference number: 6 (lower is better) Translates to: YMALNYKALLLS*LGRIVYDTSNR Trigger: CCTATTACTGGTGTCATAAACAATTCGCCCAAGGCATGACAATAGCAAAGCTTTATAATTCAATGCCATATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435389.6 |
||