Pregenerated sensors for LINC01794 (Homo sapiens)
Ensembl gene IDs: ENSG00000233128Ensembl transcript IDs: ENST00000420187.1, ENST00000655021.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACTTCCAGCTCCATCGTGTTCTGTTTCAATCTCGAGACACTGTCTTaGTCCAACCACTCACTTGGTGAGAGAGTGCCTTATTCATCCATA | + |
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Preference number: 5 (lower is better) Translates to: TSSSIVFCFNLETLS*SNHSLGERVPYSSI Trigger: TATGGATGAATAAGGCACTCTCTCACCAAGTGAGTGGTTGGAGCAAGACAGTGTCTCGAGATTGAAACAGAACACGATGGAGCTGGAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420187.1 |
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| CDS CCA 90 bp | TTCATATCCCGGTGGAGGGTCTTGACTGCAAATTGTCCAGGTTCTTaGCATTTTGAACAAAGAATTGGACAGAATGCACAGCAAAGCAAT | + |
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Preference number: 5 (lower is better) Translates to: FISRWRVLTANCPGS*HFEQRIGQNAQQSN Trigger: ATTGCTTTGCTGTGCATTCTGTCCAATTCTTTGTTCAAAATGCCAAGAACCTGGACAATTTGCAGTCAAGACCCTCCACCGGGATATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420187.1 ENST00000655021.1 |
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| CDS GCA 72 bp | TCCATCGTGTTCTGTTTCAATCTCGAGACACTGTCTTaGTCCAACCACTCACTTGGTGAGAGAGTGCCTTAT | + |
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Preference number: 6 (lower is better) Translates to: SIVFCFNLETLS*SNHSLGERVPY Trigger: ATAAGGCACTCTCTCACCAAGTGAGTGGTTGGAGCAAGACAGTGTCTCGAGATTGAAACAGAACACGATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420187.1 |
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| CDS TCA 72 bp | GATATAATTGGAAGTTCATATCCCGGTGGAGGGTCTTaGCTGCAAATTGTCCAGGTTCTTGGCATTTTGAAC | + |
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Preference number: 6 (lower is better) Translates to: DIIGSSYPGGGS*LQIVQVLGILN Trigger: GTTCAAAATGCCAAGAACCTGGACAATTTGCAGTCAAGACCCTCCACCGGGATATGAACTTCCAATTATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420187.1 ENST00000655021.1 |
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| CDS TCA 72 bp | TTTAAATGTGGAAAGAAATGGAGTAGTCAAGTCCAATaGTATAATTGGAAGTTCATATCCCGGTGGAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: FKCGKKWSSQVQ*YNWKFISRWRV Trigger: GACCCTCCACCGGGATATGAACTTCCAATTATATCATTGGACTTGACTACTCCATTTCTTTCCACATTTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420187.1 ENST00000655021.1 |
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