Pregenerated sensors for LINC01790 (Homo sapiens)

Ensembl gene IDs: ENSG00000230173

Ensembl transcript IDs: ENST00000447194.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCTGTCATCAGCCATTTCAGTACTTGTACAGTGGGCCTGATGTCATaGCTACTTCTGGGGTTTCAGTTGGGCTTCCCAGATATATTTGGG	+
Preference number: 5 (lower is better) Translates to: SVISHFSTCTVGLMS*LLLGFQLGFPDIFG Trigger: CCCAAATATATCTGGGAAGCCCAACTGAAACCCCAGAAGTAGTCATGACATCAGGCCCACTGTACAAGTACTGAAATGGCTGATGACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447194.1
CDS CAA 72 bp	GGGTCGAACATCCTCTGTCATCAGCCATTTCAGTACTaGTACAGTGGGCCTGATGTCATGACTACTTCTGGG	+
Preference number: 6 (lower is better) Translates to: GSNILCHQPFQY*YSGPDVMTTSG Trigger: CCCAGAAGTAGTCATGACATCAGGCCCACTGTACAAGTACTGAAATGGCTGATGACAGAGGATGTTCGACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447194.1
CDS TCA 72 bp	AGCCATTTCAGTACTTGTACAGTGGGCCTGATGTCATaGCTACTTCTGGGGTTTCAGTTGGGCTTCCCAGAT	+
Preference number: 6 (lower is better) Translates to: SHFSTCTVGLMS*LLLGFQLGFPD Trigger: ATCTGGGAAGCCCAACTGAAACCCCAGAAGTAGTCATGACATCAGGCCCACTGTACAAGTACTGAAATGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447194.1
CDS CAA 90 bp	GACTCATCTGGGTCGAACATCCTCTGTCATCAGCCATTTCAGTACTaGTACAGTGGGCCTGATGTCATGACTACTTCTGGGGTTTCAGTT	+
Preference number: 6 (lower is better) Translates to: DSSGSNILCHQPFQY*YSGPDVMTTSGVSV Trigger: AACTGAAACCCCAGAAGTAGTCATGACATCAGGCCCACTGTACAAGTACTGAAATGGCTGATGACAGAGGATGTTCGACCCAGATGAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447194.1
CDS TCA 72 bp	CAGAGGCTAAGTAAGAGTTCAGGAGAAGTGGCGTGCTaGTGGAGGTATAGGAGTGGACACAAATGCAGATTT	+
Preference number: 6 (lower is better) Translates to: QRLSKSSGEVAC*WRYRSGHKCRF Trigger: AAATCTGCATTTGTGTCCACTCCTATACCTCCATCAGCACGCCACTTCTCCTGAACTCTTACTTAGCCTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447194.1
CDS TCA 72 bp	AAGAAGTCATCAGAGGTAAAGGTATGCTTGCAAACTTaGGAAGTGGCAATGATTTGGTTTGTTGGTGAGAGG	+
Preference number: 6 (lower is better) Translates to: KKSSEVKVCLQT*EVAMIWFVGER Trigger: CCTCTCACCAACAAACCAAATCATTGCCACTTCTCAAGTTTGCAAGCATACCTTTACCTCTGATGACTTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447194.1
CDS CCA 72 bp	ACTGGATCTGTGCTCTTTACACTTGCCCCAGTACAGTaGATAATTTCTAGTACCAACCTTTCCTTATCTACT	+
Preference number: 6 (lower is better) Translates to: TGSVLFTLAPVQ*IISSTNLSLST Trigger: AGTAGATAAGGAAAGGTTGGTACTAGAAATTATCCACTGTACTGGGGCAAGTGTAAAGAGCACAGATCCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447194.1
CDS CAA 72 bp	GCTGATGGAGGTATAGGAGTGGACACAAATGCAGATTaGTTTTTGTGTCATGTTAAAGCCTCATTCAAAAGA	+
Preference number: 6 (lower is better) Translates to: ADGGIGVDTNAD*FLCHVKASFKR Trigger: TCTTTTGAATGAGGCTTTAACATGACACAAAAACAAATCTGCATTTGTGTCCACTCCTATACCTCCATCAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000447194.1

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