Pregenerated sensors for LINC01789 (Homo sapiens)
Ensembl gene IDs: ENSG00000229457Ensembl transcript IDs: ENST00000443123.1, ENST00000455614.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TACCAGATGGTGGCTCCAGCAGCTGCTTCTGCTCTCTGTAAGCCATaGTTCTGTATTTCTCTGTCTGTCCAGGTTTTGGGTGGTGGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: YQMVAPAAASALCKP*FCISLSVQVLGGGL Trigger: CAACCCACCACCCAAAACCTGGACAGACAGAGAAATACAGAAGCATGGCTTACAGAGAGCAGAAGCAGCTGCTGGAGCCACCATCTGGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS GCA 90 bp | GCAAAGCAGGCTGATGTCCCTGTTCTCATGCTGAAGGCTGAGGGCTaGATCTTTGTGAAGAACTGGAAGTTGGTGTCATCTCAGCAAAAT | + |
|
Preference number: 5 (lower is better) Translates to: AKQADVPVLMLKAEG*IFVKNWKLVSSQQN Trigger: ATTTTGCTGAGATGACACCAACTTCCAGTTCTTCACAAAGATGCAGCCCTCAGCCTTCAGCATGAGAACAGGGACATCAGCCTGCTTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS TCA 90 bp | TTTGTTGGTGAAATAACTGTCTCCAGGTCACTGTTTTCTCATCCCTaGAGTGTTTCTACCAGATGGTGGCTCCAGCAGCTGCTTCTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: FVGEITVSRSLFSHP*SVSTRWWLQQLLLL Trigger: GAGCAGAAGCAGCTGCTGGAGCCACCATCTGGTAGAAACACTTCAGGGATGAGAAAACAGTGACCTGGAGACAGTTATTTCACCAACAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS TCA 90 bp | CTGTATTTCTCTGTCTGTCCAGGTTTTGGGTGGTGGGTTGCTCAGTaGCCTCACTTTTCTGATGGATTGTTTATGAGCTGGATGTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LYFSVCPGFGWWVAQ*PHFSDGLFMSWMSL Trigger: CAAGGACATCCAGCTCATAAACAATCCATCAGAAAAGTGAGGTCACTGAGCAACCCACCACCCAAAACCTGGACAGACAGAGAAATACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS GCA 90 bp | CACTATCTAAACTTGTTCTACCTGAGGGTCTGTTGTGCAGTGATCTaGAAAACAAGAGGACCTTGGACGTTGCCTGCACTTGTTCTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: HYLNLFYLRVCCAVI*KTRGPWTLPALVLS Trigger: AGAGAGAACAAGTGCAGGCAACGTCCAAGGTCCTCTTGTTTTGCAGATCACTGCACAACAGACCCTCAGGTAGAACAAGTTTAGATAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443123.1 |
||
| CDS TCA 90 bp | GTTCTCTGTATGATGGAACTGAGAAGTGCTGGCTGCCTTTGTTGGTaGAATAACTGTCTCCAGGTCACTGTTTTCTCATCCCTGAAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: VLCMMELRSAGCLCW*NNCLQVTVFSSLKC Trigger: ACACTTCAGGGATGAGAAAACAGTGACCTGGAGACAGTTATTTCACCAACAAAGGCAGCCAGCACTTCTCAGTTCCATCATACAGAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS TCA 72 bp | CATGGGCAAAGCAGGCTGATGTCCCTGTTCTCATGCTaGAGGCTGAGGGTGTTTATGAGCTGGATGTCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: HGQSRLMSLFSC*RLRVFMSWMSL Trigger: CAAGGACATCCAGCTCATAAACACCCTCAGCCTTCAGCATGAGAACAGGGACATCAGCCTGCTTTGCCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443123.1 |
||
| CDS GCA 72 bp | GTGGCTCCAGCAGCTGCTTCTGCTCTCTGTAAGCCATaGTTCTGTATTTCTCTGTCTGTCCAGGTTTTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: VAPAAASALCKP*FCISLSVQVLG Trigger: ACCCAAAACCTGGACAGACAGAGAAATACAGAAGCATGGCTTACAGAGAGCAGAAGCAGCTGCTGGAGCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS GCA 72 bp | GCTGATGTCCCTGTTCTCATGCTGAAGGCTGAGGGCTaGATCTTTGTGAAGAACTGGAAGTTGGTGTCATCT | + |
|
Preference number: 6 (lower is better) Translates to: ADVPVLMLKAEG*IFVKNWKLVSS Trigger: AGATGACACCAACTTCCAGTTCTTCACAAAGATGCAGCCCTCAGCCTTCAGCATGAGAACAGGGACATCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS CCA 72 bp | GTCTGTTGTGCAGTGATCTGCAAAACAAGAGGACCTTaGACGTTGCCTGCACTTGTTCTCTCTTCCTGCATG | + |
|
Preference number: 6 (lower is better) Translates to: VCCAVICKTRGP*TLPALVLSSCM Trigger: CATGCAGGAAGAGAGAACAAGTGCAGGCAACGTCCAAGGTCCTCTTGTTTTGCAGATCACTGCACAACAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443123.1 |
||
| CDS TCA 72 bp | TCTGTCTGTCCAGGTTTTGGGTGGTGGGTTGCTCAGTaGCCTCACTTTTCTGATGGATTGTTTATGAGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: SVCPGFGWWVAQ*PHFSDGLFMSW Trigger: CCAGCTCATAAACAATCCATCAGAAAAGTGAGGTCACTGAGCAACCCACCACCCAAAACCTGGACAGACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS TCA 72 bp | GAAATAACTGTCTCCAGGTCACTGTTTTCTCATCCCTaGAGTGTTTCTACCAGATGGTGGCTCCAGCAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: EITVSRSLFSHP*SVSTRWWLQQL Trigger: CAGCTGCTGGAGCCACCATCTGGTAGAAACACTTCAGGGATGAGAAAACAGTGACCTGGAGACAGTTATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS CAA 72 bp | AAGCCATGCTTCTGTATTTCTCTGTCTGTCCAGGTTTaGGGTGGTGGGTTGCTCAGTGACCTCACTTTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: KPCFCISLSVQV*GGGLLSDLTFL Trigger: CAGAAAAGTGAGGTCACTGAGCAACCCACCACCCAAAACCTGGACAGACAGAGAAATACAGAAGCATGGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS CAA 90 bp | GCTCTCTGTAAGCCATGCTTCTGTATTTCTCTGTCTGTCCAGGTTTaGGGTGGTGGGTTGCTCAGTGACCTCACTTTTCTGATGGATTGT | + |
|
Preference number: 6 (lower is better) Translates to: ALCKPCFCISLSVQV*GGGLLSDLTFLMDC Trigger: ACAATCCATCAGAAAAGTGAGGTCACTGAGCAACCCACCACCCAAAACCTGGACAGACAGAGAAATACAGAAGCATGGCTTACAGAGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS CAA 90 bp | CTCATGCTGAAGGCTGAGGGCTGCATCTTTGTGAAGAACTGGAAGTaGGTGTCATCTCAGCAAAATGTTCTCTGTATGATGGAACTGAGA | + |
|
Preference number: 6 (lower is better) Translates to: LMLKAEGCIFVKNWK*VSSQQNVLCMMELR Trigger: TCTCAGTTCCATCATACAGAGAACATTTTGCTGAGATGACACCAACTTCCAGTTCTTCACAAAGATGCAGCCCTCAGCCTTCAGCATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS CAA 72 bp | TCTGCAAAACAAGAGGACCTTGGACGTTGCCTGCACTaGTTCTCTCTTCCTGCATGTAAAAACTATCTCGGA | + |
|
Preference number: 6 (lower is better) Translates to: SAKQEDLGRCLH*FSLPACKNYLG Trigger: TCCGAGATAGTTTTTACATGCAGGAAGAGAGAACAAGTGCAGGCAACGTCCAAGGTCCTCTTGTTTTGCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000443123.1 |
||
| CDS CAA 72 bp | GAGTCACTATCTAAACTTGTTCTACCTGAGGGTCTGTaGTGCAGTGATCTGCAAAACAAGAGGACCTTGGAC | + |
|
Preference number: 6 (lower is better) Translates to: ESLSKLVLPEGL*CSDLQNKRTLD Trigger: GTCCAAGGTCCTCTTGTTTTGCAGATCACTGCACAACAGACCCTCAGGTAGAACAAGTTTAGATAGTGACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443123.1 |
||
| CDS GCA 72 bp | TCACTATCTAAACTTGTTCTACCTGAGGGTCTGTTGTaGAGTGATCTGCAAAACAAGAGGACCTTGGACGTT | + |
|
Preference number: 6 (lower is better) Translates to: SLSKLVLPEGLL*SDLQNKRTLDV Trigger: AACGTCCAAGGTCCTCTTGTTTTGCAGATCACTGCACAACAGACCCTCAGGTAGAACAAGTTTAGATAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443123.1 |
||
| CDS CAA 72 bp | TGTATTTCTCTGTCTGTCCAGGTTTTGGGTGGTGGGTaGCTCAGTGACCTCACTTTTCTGATGGATTGTTTA | + |
|
Preference number: 6 (lower is better) Translates to: CISLSVQVLGGG*LSDLTFLMDCL Trigger: TAAACAATCCATCAGAAAAGTGAGGTCACTGAGCAACCCACCACCCAAAACCTGGACAGACAGAGAAATACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS CAA 72 bp | AAGGCTGAGGGCTGCATCTTTGTGAAGAACTGGAAGTaGGTGTCATCTCAGCAAAATGTTCTCTGTATGATG | + |
|
Preference number: 6 (lower is better) Translates to: KAEGCIFVKNWK*VSSQQNVLCMM Trigger: CATCATACAGAGAACATTTTGCTGAGATGACACCAACTTCCAGTTCTTCACAAAGATGCAGCCCTCAGCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455614.1 |
||
| CDS CAA 90 bp | CCAACCATGGTTAGTAAAGTCTTCCAGGTGATGCTAACTTGTACTTaGGTTAAGAGTCACTATCTAAACTTGTTCTACCTGAGGGTCTGT | + |
|
Preference number: 6 (lower is better) Translates to: PTMVSKVFQVMLTCT*VKSHYLNLFYLRVC Trigger: ACAGACCCTCAGGTAGAACAAGTTTAGATAGTGACTCTTAACCAAAGTACAAGTTAGCATCACCTGGAAGACTTTACTAACCATGGTTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443123.1 |
||
| CDS CAA 72 bp | GTTAGTAAAGTCTTCCAGGTGATGCTAACTTGTACTTaGGTTAAGAGTCACTATCTAAACTTGTTCTACCTG | + |
|
Preference number: 6 (lower is better) Translates to: VSKVFQVMLTCT*VKSHYLNLFYL Trigger: CAGGTAGAACAAGTTTAGATAGTGACTCTTAACCAAAGTACAAGTTAGCATCACCTGGAAGACTTTACTAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443123.1 |
||