Pregenerated sensors for LINC01788 (Homo sapiens)

Ensembl gene IDs: ENSG00000229051

Ensembl transcript IDs: ENST00000419450.1, ENST00000660283.1, ENST00000664802.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGCTCCCAGTTTGCTCTGCCTGGTGAAAATGCAGCTCACTCTCAATaGAACCATTTTTATCCTGTTGTCAGCAGACACAGCTGCAGCCAC	+
Preference number: 5 (lower is better) Translates to: SSQFALPGENAAHSQ*NHFYPVVSRHSCSH Trigger: GTGGCTGCAGCTGTGTCTGCTGACAACAGGATAAAAATGGTTGCATTGAGAGTGAGCTGCATTTTCACCAGGCAGAGCAAACTGGGAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000419450.1 ENST00000660283.1 ENST00000664802.1
CDS CCA 90 bp	TGCCTAGTCAGGTGGGGCCTACATTTAACCCGGATAACCTACATTTaGAACGTGGGAGAAATGCAATTTCTGTTTCCCCGTTCTCTCTTC	+
Preference number: 5 (lower is better) Translates to: CLVRWGLHLTRITYI*NVGEMQFLFPRSLF Trigger: GAAGAGAGAACGGGGAAACAGAAATTGCATTTCTCCCACGTTCCAAATGTAGGTTATCCGGGTTAAATGTAGGCCCCACCTGACTAGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000419450.1 ENST00000660283.1 ENST00000664802.1
CDS GCA 90 bp	CAATTTCTGTTTCCCCGTTCTCTCTTCCACATCTCTTTCTACACTTaGTGGCTACTATTTCTCACTCTTTCACCCCTTCCAGAGACTGAC	+
Preference number: 5 (lower is better) Translates to: QFLFPRSLFHISFYT*WLLFLTLSPLPETD Trigger: GTCAGTCTCTGGAAGGGGTGAAAGAGTGAGAAATAGTAGCCAGCAAGTGTAGAAAGAGATGTGGAAGAGAGAACGGGGAAACAGAAATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000419450.1 ENST00000660283.1 ENST00000664802.1
CDS TCA 90 bp	CCAACACAATTGCAATCCAGTATAAGAGGCTCCCCTGGATTTGAATaGTGTCCAGAGCTGACCTGTTCTACCATGAGACTCTTTAGTTGT	+
Preference number: 5 (lower is better) Translates to: PTQLQSSIRGSPGFE*CPELTCSTMRLFSC Trigger: ACAACTAAAGAGTCTCATGGTAGAACAGGTCAGCTCTGGACATCATTCAAATCCAGGGGAGCCTCTTATACTGGATTGCAATTGTGTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000419450.1 ENST00000660283.1 ENST00000664802.1
CDS GCA 90 bp	GACCAGAAGAAAGAAGCCATTAGAGAAAAAGAACACCATTGTACATaGCCAACACAATTGCAATCCAGTATAAGAGGCTCCCCTGGATTT	+
Preference number: 5 (lower is better) Translates to: DQKKEAIREKEHHCT*PTQLQSSIRGSPGF Trigger: AAATCCAGGGGAGCCTCTTATACTGGATTGCAATTGTGTTGGGCATGTACAATGGTGTTCTTTTTCTCTAATGGCTTCTTTCTTCTGGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000419450.1 ENST00000660283.1 ENST00000664802.1
CDS CAA 90 bp	TTGCCTAGTCAGGTGGGGCCTACATTTAACCCGGATAACCTACATTaGGAACGTGGGAGAAATGCAATTTCTGTTTCCCCGTTCTCTCTT	+
Preference number: 6 (lower is better) Translates to: LPSQVGPTFNPDNLH*ERGRNAISVSPFSL Trigger: AAGAGAGAACGGGGAAACAGAAATTGCATTTCTCCCACGTTCCAAATGTAGGTTATCCGGGTTAAATGTAGGCCCCACCTGACTAGGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000419450.1 ENST00000660283.1 ENST00000664802.1
CDS TCA 72 bp	TTGCAATCCAGTATAAGAGGCTCCCCTGGATTTGAATaGTGTCCAGAGCTGACCTGTTCTACCATGAGACTC	+
Preference number: 6 (lower is better) Translates to: LQSSIRGSPGFE*CPELTCSTMRL Trigger: GAGTCTCATGGTAGAACAGGTCAGCTCTGGACATCATTCAAATCCAGGGGAGCCTCTTATACTGGATTGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000419450.1 ENST00000660283.1 ENST00000664802.1
CDS CCA 72 bp	AGGTGGGGCCTACATTTAACCCGGATAACCTACATTTaGAACGTGGGAGAAATGCAATTTCTGTTTCCCCGT	+
Preference number: 6 (lower is better) Translates to: RWGLHLTRITYI*NVGEMQFLFPR Trigger: ACGGGGAAACAGAAATTGCATTTCTCCCACGTTCCAAATGTAGGTTATCCGGGTTAAATGTAGGCCCCACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000419450.1 ENST00000660283.1 ENST00000664802.1
CDS TCA 72 bp	ACAATTGCAATCCAGTATAAGAGGCTCCCCTGGATTTaGATGATGTCCAGAGCTGACCTGTTCTACCATGAG	+
Preference number: 6 (lower is better) Translates to: TIAIQYKRLPWI*MMSRADLFYHE Trigger: CTCATGGTAGAACAGGTCAGCTCTGGACATCATTCAAATCCAGGGGAGCCTCTTATACTGGATTGCAATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000419450.1 ENST00000660283.1 ENST00000664802.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu