Pregenerated sensors for LINC01787 (Homo sapiens)
Ensembl gene IDs: ENSG00000231987Ensembl transcript IDs: ENST00000435311.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCAAGGCTTCTCCCCCTTATTATCTCTAGTAATCACCCTTTAAGATaGGGCTGCCATCTCAGGGATTCCCACAGTTCTCTCTGGCTGTTG | + |
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Preference number: 5 (lower is better) Translates to: PRLLPLIISSNHPLR*GCHLRDSHSSLWLL Trigger: CAACAGCCAGAGAGAACTGTGGGAATCCCTGAGATGGCAGCCTCATCTTAAAGGGTGATTACTAGAGATAATAAGGGGGAGAAGCCTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS CCA 90 bp | GTCTCAGGGACTCAGGGACTCCAAAATCTGTCTCCTAGCTTCTTATaGGGCAGACATTCTTATTTCTTCCCTCAGATCCACAAGGGTATA | + |
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Preference number: 5 (lower is better) Translates to: VSGTQGLQNLSPSFL*GRHSYFFPQIHKGI Trigger: TATACCCTTGTGGATCTGAGGGAAGAAATAAGAATGTCTGCCCCATAAGAAGCTAGGAGACAGATTTTGGAGTCCCTGAGTCCCTGAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS GCA 90 bp | ACTAGAATATCATATAAGTCAGATGCTGAGGCTGGGAAGGCATTTTaGATCATGTCAATCAGTAAGTCAGAGAAAGCTAGTTGTTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: TRISYKSDAEAGKAF*IMSISKSEKASCCL Trigger: CAAGCAACAACTAGCTTTCTCTGACTTACTGATTGACATGATGCAAAATGCCTTCCCAGCCTCAGCATCTGACTTATATGATATTCTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS TCA 90 bp | CAGATCCACAAGGGTATACCAATTGGAAGCCATACTGGTATTATATaGACCACCCTTCCTGATCTTAAGGTAAGATCTTACCTATCTTTT | + |
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Preference number: 5 (lower is better) Translates to: QIHKGIPIGSHTGII*TTLPDLKVRSYLSF Trigger: AAAAGATAGGTAAGATCTTACCTTAAGATCAGGAAGGGTGGTTCATATAATACCAGTATGGCTTCCAATTGGTATACCCTTGTGGATCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS TCA 72 bp | CTCTCTTCTCTCGTCTTCCACCATGTGAGATGTGCCTaGAATCTTGTCCTTCTGCCACTGAGTGGCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: LSSLVFHHVRCA*NLVLLPLSGFS Trigger: GGAGAAGCCACTCAGTGGCAGAAGGACAAGATTTCAGGCACATCTCACATGGTGGAAGACGAGAGAAGAGAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS TCA 72 bp | TCCATGTGTTGTGAGAGGGACCCAGTGGGAGGTAATTaGATCATGGGAGCAGGTCTTTTCCATGCTGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: SMCCERDPVGGN*IMGAGLFHAAL Trigger: GAGAGCAGCATGGAAAAGACCTGCTCCCATGATTCAATTACCTCCCACTGGGTCCCTCTCACAACACATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS GCA 72 bp | CAAGCTCTCTTCTCTCGTCTTCCACCATGTGAGATGTaGCTGAAATCTTGTCCTTCTGCCACTGAGTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: QALFSRLPPCEM*LKSCPSATEWL Trigger: AAGCCACTCAGTGGCAGAAGGACAAGATTTCAGGCACATCTCACATGGTGGAAGACGAGAGAAGAGAGCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS CCA 72 bp | GAGATGTGCCTGAAATCTTGTCCTTCTGCCACTGAGTaGCTTCTCCAGCCACATGGAACTGTAAGTCCAATA | + |
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Preference number: 6 (lower is better) Translates to: EMCLKSCPSATE*LLQPHGTVSPI Trigger: TATTGGACTTACAGTTCCATGTGGCTGGAGAAGCCACTCAGTGGCAGAAGGACAAGATTTCAGGCACATCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS GCA 72 bp | TCATATAAGTCAGATGCTGAGGCTGGGAAGGCATTTTaGATCATGTCAATCAGTAAGTCAGAGAAAGCTAGT | + |
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Preference number: 6 (lower is better) Translates to: SYKSDAEAGKAF*IMSISKSEKAS Trigger: ACTAGCTTTCTCTGACTTACTGATTGACATGATGCAAAATGCCTTCCCAGCCTCAGCATCTGACTTATATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS CAA 72 bp | CTTATTTCTTCCCTCAGATCCACAAGGGTATACCAATaGGAAGCCATACTGGTATTATATGAACCACCCTTC | + |
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Preference number: 6 (lower is better) Translates to: LISSLRSTRVYQ*EAILVLYEPPF Trigger: GAAGGGTGGTTCATATAATACCAGTATGGCTTCCAATTGGTATACCCTTGTGGATCTGAGGGAAGAAATAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS CAA 90 bp | GCAGACATTCTTATTTCTTCCCTCAGATCCACAAGGGTATACCAATaGGAAGCCATACTGGTATTATATGAACCACCCTTCCTGATCTTA | + |
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Preference number: 6 (lower is better) Translates to: ADILISSLRSTRVYQ*EAILVLYEPPFLIL Trigger: TAAGATCAGGAAGGGTGGTTCATATAATACCAGTATGGCTTCCAATTGGTATACCCTTGTGGATCTGAGGGAAGAAATAAGAATGTCTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS TCA 72 bp | AGTTGGCCGGTCTTAGGTATGTCTTTATCAGCAGCATaGAAGTGGACTAATACAGTTGTCATCTTTGTAAGT | + |
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Preference number: 6 (lower is better) Translates to: SWPVLGMSLSAA*KWTNTVVIFVS Trigger: ACTTACAAAGATGACAACTGTATTAGTCCACTTTCATGCTGCTGATAAAGACATACCTAAGACCGGCCAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS TCA 72 bp | AAGGGTATACCAATTGGAAGCCATACTGGTATTATATaGACCACCCTTCCTGATCTTAAGGTAAGATCTTAC | + |
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Preference number: 6 (lower is better) Translates to: KGIPIGSHTGII*TTLPDLKVRSY Trigger: GTAAGATCTTACCTTAAGATCAGGAAGGGTGGTTCATATAATACCAGTATGGCTTCCAATTGGTATACCCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS CAA 90 bp | TGTACCACATTTTCTTTATCCATCCATTTATCGATGGATACTGGATaGCTTCATTTCTTGGCTATTGTGATCAATGCTTTCAAAACACTC | + |
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Preference number: 6 (lower is better) Translates to: CTTFSLSIHLSMDTG*LHFLAIVINAFKTL Trigger: GAGTGTTTTGAAAGCATTGATCACAATAGCCAAGAAATGAAGCAATCCAGTATCCATCGATAAATGGATGGATAAAGAAAATGTGGTACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS CCA 72 bp | CACATTTTCTTTATCCATCCATTTATCGATGGATACTaGATTGCTTCATTTCTTGGCTATTGTGATCAATGC | + |
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Preference number: 6 (lower is better) Translates to: HIFFIHPFIDGY*IASFLGYCDQC Trigger: GCATTGATCACAATAGCCAAGAAATGAAGCAATCCAGTATCCATCGATAAATGGATGGATAAAGAAAATGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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| CDS CAA 72 bp | TTTTCTTTATCCATCCATTTATCGATGGATACTGGATaGCTTCATTTCTTGGCTATTGTGATCAATGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: FSLSIHLSMDTG*LHFLAIVINAF Trigger: GAAAGCATTGATCACAATAGCCAAGAAATGAAGCAATCCAGTATCCATCGATAAATGGATGGATAAAGAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435311.1 |
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