Pregenerated sensors for LINC01780 (Homo sapiens)
Ensembl gene IDs: ENSG00000232650Ensembl transcript IDs: ENST00000420059.6
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTGCAGGCCCGGCTAGGGCGGCTGCCAGCCACGGGGGAGAGGCGCTaGCAAGAGCCAGAGAGGATCCCCTGCAAGAAATATATCGCGTGC | + |
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Preference number: 5 (lower is better) Translates to: LQARLGRLPATGERR*QEPERIPCKKYIAC Trigger: GCACGCGATATATTTCTTGCAGGGGATCCTCTCTGGCTCTTGCCAGCGCCTCTCCCCCGTGGCTGGCAGCCGCCCTAGCCGGGCCTGCAA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS TCA 90 bp | ACAGTACACAGGCCGGTGCACAGCTCCGCTTTCCTCTGCCCAGCTTaGCATCACATGCTCGCCCCGGGGCTGCCACTTGGAGTCAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: TVHRPVHSSAFLCPA*HHMLAPGLPLGVRK Trigger: TTTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCTGGGCAGAGGAAAGCGGAGCTGTGCACCGGCCTGTGTACTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS GCA 90 bp | GGCCGGTGCACAGCTCCGCTTTCCTCTGCCCAGCTTGACATCACATaGTCGCCCCGGGGCTGCCACTTGGAGTCAGGAAAGCCCATATAT | + |
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Preference number: 5 (lower is better) Translates to: GRCTAPLSSAQLDIT*SPRGCHLESGKPIY Trigger: ATATATGGGCTTTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCTGGGCAGAGGAAAGCGGAGCTGTGCACCGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS GCA 90 bp | GCTGACACTTTTACGACCCGGGCCGGCTTACAGTACACAGGCCGGTaGACAGCTCCGCTTTCCTCTGCCCAGCTTGACATCACATGCTCG | + |
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Preference number: 5 (lower is better) Translates to: ADTFTTRAGLQYTGR*TAPLSSAQLDITCS Trigger: CGAGCATGTGATGTCAAGCTGGGCAGAGGAAAGCGGAGCTGTGCACCGGCCTGTGTACTGTAAGCCGGCCCGGGTCGTAAAAGTGTCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS TCA 90 bp | TGGCAAGAGCCAGAGAGGATCCCCTGCAAGAAATATATCGCGTGCTaGCACTTTTACGACCCGGGCCGGCTTACAGTACACAGGCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: WQEPERIPCKKYIAC*HFYDPGRLTVHRPV Trigger: CACCGGCCTGTGTACTGTAAGCCGGCCCGGGTCGTAAAAGTGTCAGCACGCGATATATTTCTTGCAGGGGATCCTCTCTGGCTCTTGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS GCA 90 bp | CCGCTTTCCTCTGCCCAGCTTGACATCACATGCTCGCCCCGGGGCTaGCACTTGGAGTCAGGAAAGCCCATATATTTCCCTCCTCAGATA | + |
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Preference number: 5 (lower is better) Translates to: PLSSAQLDITCSPRG*HLESGKPIYFPPQI Trigger: TATCTGAGGAGGGAAATATATGGGCTTTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCTGGGCAGAGGAAAGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS TCA 90 bp | CAGCCACTCCTCTTCATCACTGAACACCTTTATGAGGTCATCTCGTaGACAGTAAACCCAAGGTCCTCTTCTTTGCCTCCATCCTTACTC | + |
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Preference number: 5 (lower is better) Translates to: QPLLFITEHLYEVIS*TVNPRSSSLPPSLL Trigger: GAGTAAGGATGGAGGCAAAGAAGAGGACCTTGGGTTTACTGTTCACGAGATGACCTCATAAAGGTGTTCAGTGATGAAGAGGAGTGGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS GCA 90 bp | CCCATATATTTCCCTCCTCAGATAGGCCTAGTGGTTCTCGTCAGGTaGAGAAAGCCAATAAATCACCAGCGAAGTCTCCATGTATCTATC | + |
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Preference number: 5 (lower is better) Translates to: PIYFPPQIGLVVLVR*RKPINHQRSLHVSI Trigger: GATAGATACATGGAGACTTCGCTGGTGATTTATTGGCTTTCTGCACCTGACGAGAACCACTAGGCCTATCTGAGGAGGGAAATATATGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CCA 72 bp | CCCGGCGCTCCGGGGCAGGGCGGAGGGATAGCGACCTaGGGCATCCGCTGTTTGCAGGCCCGGCTAGGGCGG | + |
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Preference number: 6 (lower is better) Translates to: PGAPGQGGGIAT*GIRCLQARLGR Trigger: CCGCCCTAGCCGGGCCTGCAAACAGCGGATGCCCCAGGTCGCTATCCCTCCGCCCTGCCCCGGAGCGCCGGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 72 bp | CAGGCCGGTGCACAGCTCCGCTTTCCTCTGCCCAGCTaGACATCACATGCTCGCCCCGGGGCTGCCACTTGG | + |
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Preference number: 6 (lower is better) Translates to: QAGAQLRFPLPS*TSHARPGAATW Trigger: CCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCTGGGCAGAGGAAAGCGGAGCTGTGCACCGGCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CCA 72 bp | CGGCTAGGGCGGCTGCCAGCCACGGGGGAGAGGCGCTaGCAAGAGCCAGAGAGGATCCCCTGCAAGAAATAT | + |
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Preference number: 6 (lower is better) Translates to: RLGRLPATGERR*QEPERIPCKKY Trigger: ATATTTCTTGCAGGGGATCCTCTCTGGCTCTTGCCAGCGCCTCTCCCCCGTGGCTGGCAGCCGCCCTAGCCG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS TCA 72 bp | AGGAGAAATGAGAACAACTCAGGCCGGTGGCCAAGGTaGGGCCTGCGGGTAGGGGGCGCAGTGCCTGGCACA | + |
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Preference number: 6 (lower is better) Translates to: RRNENNSGRWPR*GLRVGGAVPGT Trigger: TGTGCCAGGCACTGCGCCCCCTACCCGCAGGCCTCACCTTGGCCACCGGCCTGAGTTGTTCTCATTTCTCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 90 bp | TACAGTACACAGGCCGGTGCACAGCTCCGCTTTCCTCTGCCCAGCTaGACATCACATGCTCGCCCCGGGGCTGCCACTTGGAGTCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: YSTQAGAQLRFPLPS*TSHARPGAATWSQE Trigger: TTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCTGGGCAGAGGAAAGCGGAGCTGTGCACCGGCCTGTGTACTGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS GCA 72 bp | ACAGCTCCGCTTTCCTCTGCCCAGCTTGACATCACATaGTCGCCCCGGGGCTGCCACTTGGAGTCAGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: TAPLSSAQLDIT*SPRGCHLESGK Trigger: CTTTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCTGGGCAGAGGAAAGCGGAGCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS GCA 72 bp | TTTACGACCCGGGCCGGCTTACAGTACACAGGCCGGTaGACAGCTCCGCTTTCCTCTGCCCAGCTTGACATC | + |
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Preference number: 6 (lower is better) Translates to: FTTRAGLQYTGR*TAPLSSAQLDI Trigger: GATGTCAAGCTGGGCAGAGGAAAGCGGAGCTGTGCACCGGCCTGTGTACTGTAAGCCGGCCCGGGTCGTAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 90 bp | TCCTCTGCCCAGCTTGACATCACATGCTCGCCCCGGGGCTGCCACTaGGAGTCAGGAAAGCCCATATATTTCCCTCCTCAGATAGGCCTA | + |
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Preference number: 6 (lower is better) Translates to: SSAQLDITCSPRGCH*ESGKPIYFPPQIGL Trigger: TAGGCCTATCTGAGGAGGGAAATATATGGGCTTTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCTGGGCAGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS GCA 72 bp | TCTGCCCAGCTTGACATCACATGCTCGCCCCGGGGCTaGCACTTGGAGTCAGGAAAGCCCATATATTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: SAQLDITCSPRG*HLESGKPIYFP Trigger: AGGGAAATATATGGGCTTTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCTGGGCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CCA 72 bp | AGAGGACAACTGCAGGCTCTGAATCTTCCTGGGGTCTaGACTGAACTCAGGACCGTGGCCCTCCTCAGTTAC | + |
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Preference number: 6 (lower is better) Translates to: RGQLQALNLPGV*TELRTVALLSY Trigger: GTAACTGAGGAGGGCCACGGTCCTGAGTTCAGTCCAGACCCCAGGAAGATTCAGAGCCTGCAGTTGTCCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 72 bp | CAGCTTGACATCACATGCTCGCCCCGGGGCTGCCACTaGGAGTCAGGAAAGCCCATATATTTCCCTCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: QLDITCSPRGCH*ESGKPIYFPPQ Trigger: CTGAGGAGGGAAATATATGGGCTTTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS TCA 72 bp | ACAACTGCAGGCTCTGAATCTTCCTGGGGTCTGGACTaGACTCAGGACCGTGGCCCTCCTCAGTTACTGACT | + |
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Preference number: 6 (lower is better) Translates to: TTAGSESSWGLD*TQDRGPPQLLT Trigger: AGTCAGTAACTGAGGAGGGCCACGGTCCTGAGTTCAGTCCAGACCCCAGGAAGATTCAGAGCCTGCAGTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CCA 72 bp | AGCTTGACATCACATGCTCGCCCCGGGGCTGCCACTTaGAGTCAGGAAAGCCCATATATTTCCCTCCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: SLTSHARPGAAT*SQESPYISLLR Trigger: TCTGAGGAGGGAAATATATGGGCTTTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCATGTGATGTCAAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS TCA 72 bp | CCAGAGAGGATCCCCTGCAAGAAATATATCGCGTGCTaGCACTTTTACGACCCGGGCCGGCTTACAGTACAC | + |
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Preference number: 6 (lower is better) Translates to: PERIPCKKYIAC*HFYDPGRLTVH Trigger: GTGTACTGTAAGCCGGCCCGGGTCGTAAAAGTGTCAGCACGCGATATATTTCTTGCAGGGGATCCTCTCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 72 bp | ACCAGCGAAGTCTCCATGTATCTATCAGTCAGGAGCTaGTCATCCTCCAGCCTTGATCCACATGAAAGCCGG | + |
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Preference number: 6 (lower is better) Translates to: TSEVSMYLSVRS*SSSSLDPHESR Trigger: CCGGCTTTCATGTGGATCAAGGCTGGAGGATGACAAGCTCCTGACTGATAGATACATGGAGACTTCGCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS GCA 72 bp | TTCCCTCCTCAGATAGGCCTAGTGGTTCTCGTCAGGTaGAGAAAGCCAATAAATCACCAGCGAAGTCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: FPPQIGLVVLVR*RKPINHQRSLH Trigger: ATGGAGACTTCGCTGGTGATTTATTGGCTTTCTGCACCTGACGAGAACCACTAGGCCTATCTGAGGAGGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 72 bp | TGGTTCATCTCTGGGAACATTGAGTTTGCTATTGAGTaGCCCCATCAAACTCTTGGTCCACAGGTCAATCCC | + |
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Preference number: 6 (lower is better) Translates to: WFISGNIEFAIE*PHQTLGPQVNP Trigger: GGGATTGACCTGTGGACCAAGAGTTTGATGGGGCAACTCAATAGCAAACTCAATGTTCCCAGAGATGAACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 72 bp | CTTAAGGCAAAGGTCAAACTTTGGGGTAGGTTTGTGTaGACTCTAGACAGCCATCTCTTCAGCCACTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: LKAKVKLWGRFV*TLDSHLFSHSS Trigger: AGAGGAGTGGCTGAAGAGATGGCTGTCTAGAGTCAACACAAACCTACCCCAAAGTTTGACCTTTGCCTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 90 bp | CTGATTACTTGGTTCATCTCTGGGAACATTGAGTTTGCTATTGAGTaGCCCCATCAAACTCTTGGTCCACAGGTCAATCCCCAGCTTCAA | + |
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Preference number: 6 (lower is better) Translates to: LITWFISGNIEFAIE*PHQTLGPQVNPQLQ Trigger: TTGAAGCTGGGGATTGACCTGTGGACCAAGAGTTTGATGGGGCAACTCAATAGCAAACTCAATGTTCCCAGAGATGAACCAAGTAATCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS TCA 72 bp | CTCTTCATCACTGAACACCTTTATGAGGTCATCTCGTaGACAGTAAACCCAAGGTCCTCTTCTTTGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LFITEHLYEVIS*TVNPRSSSLPP Trigger: TGGAGGCAAAGAAGAGGACCTTGGGTTTACTGTTCACGAGATGACCTCATAAAGGTGTTCAGTGATGAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 72 bp | ACATTGAGTTTGCTATTGAGTTGCCCCATCAAACTCTaGGTCCACAGGTCAATCCCCAGCTTCAATATCTCA | + |
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Preference number: 6 (lower is better) Translates to: TLSLLLSCPIKL*VHRSIPSFNIS Trigger: TGAGATATTGAAGCTGGGGATTGACCTGTGGACCAAGAGTTTGATGGGGCAACTCAATAGCAAACTCAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 72 bp | TTACTTGGTTCATCTCTGGGAACATTGAGTTTGCTATaGAGTTGCCCCATCAAACTCTTGGTCCACAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: LLGSSLGTLSLL*SCPIKLLVHRS Trigger: TGACCTGTGGACCAAGAGTTTGATGGGGCAACTCAATAGCAAACTCAATGTTCCCAGAGATGAACCAAGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS CAA 72 bp | CAAGGTCCTCTTCTTTGCCTCCATCCTTACTCTGAATaGTCTGTGAATTCAGGGACTTACAGTTTCAAGATA | + |
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Preference number: 6 (lower is better) Translates to: QGPLLCLHPYSE*SVNSGTYSFKI Trigger: TATCTTGAAACTGTAAGTCCCTGAATTCACAGACAATTCAGAGTAAGGATGGAGGCAAAGAAGAGGACCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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| CDS TCA 72 bp | CTCTTCTTTGCCTCCATCCTTACTCTGAATTGTCTGTaGATTCAGGGACTTACAGTTTCAAGATATAAGACC | + |
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Preference number: 6 (lower is better) Translates to: LFFASILTLNCL*IQGLTVSRYKT Trigger: GGTCTTATATCTTGAAACTGTAAGTCCCTGAATTCACAGACAATTCAGAGTAAGGATGGAGGCAAAGAAGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420059.6 |
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