Pregenerated sensors for LINC01778 (Homo sapiens)
Ensembl gene IDs: ENSG00000223382Ensembl transcript IDs: ENST00000430320.3, ENST00000438790.1, ENST00000634319.1, ENST00000634587.2, ENST00000634980.2, ENST00000635009.2, ENST00000635044.1, ENST00000635288.1, ENST00000635357.2, ENST00000658212.1, ENST00000659416.1, ENST00000659931.1, ENST00000667276.1, ENST00000671661.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGTGACAAGAGTGAGACTCTGTCCCTGGTTGTGTCGGTCGTTTGGTaGGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTGGCCCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: GDKSETLSLVVSVVW*VCLPDSLGVSVAPS Trigger: AGAAGGGGCCACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGAGTCTCACTCTTGTCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000635009.2 |
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| CDS CCA 90 bp | AGGCAGGAGAATTGCTTGAACCTGTCCCTGGTTGTGTCGGTCGTTTaGTGCGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTGGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: RQENCLNLSLVVSVV*CVCLPDSLGVSVAP Trigger: AGGGGCCACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGTTCAAGCAATTCTCCTGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000430320.3 |
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| CDS TCA 90 bp | CCTGGACCCACAGAGGTCCCACGCTGGGTGGGCTTTCCAGGCTTCTaGCGAGTTGGCTTCCATCTTGTGGTGAGATTCTATCAGGCACGT | + |
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Preference number: 5 (lower is better) Translates to: PGPTEVPRWVGFPGF*RVGFHLVVRFYQAR Trigger: ACGTGCCTGATAGAATCTCACCACAAGATGGAAGCCAACTCGTCAGAAGCCTGGAAAGCCCACCCAGCGTGGGACCTCTGTGGGTCCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000430320.3 ENST00000438790.1 ENST00000634319.1 ENST00000634587.2 ENST00000634980.2 ENST00000635009.2 ENST00000635044.1 ENST00000635288.1 ENST00000635357.2 ENST00000658212.1 ENST00000659416.1 ENST00000659931.1 ENST00000667276.1 ENST00000671661.1 |
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| CDS GCA 90 bp | CAGGAGAATTGCTTGAACCTGTCCCTGGTTGTGTCGGTCGTTTGGTaGGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTGGCCCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: QENCLNLSLVVSVVW*VCLPDSLGVSVAPS Trigger: AGAAGGGGCCACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGTTCAAGCAATTCTCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000430320.3 |
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| CDS GCA 90 bp | ATGTCATTTCACTCCAGCCTGTCCCTGGTTGTGTCGGTCGTTTGGTaGGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTGGCCCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: MSFHSSLSLVVSVVW*VCLPDSLGVSVAPS Trigger: AGAAGGGGCCACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGCTGGAGTGAAATGACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659931.1 |
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| CDS CCA 90 bp | ATCATGTCATTTCACTCCAGCCTGTCCCTGGTTGTGTCGGTCGTTTaGTGCGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTGGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: IMSFHSSLSLVVSVV*CVCLPDSLGVSVAP Trigger: AGGGGCCACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGCTGGAGTGAAATGACATGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659931.1 |
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| CDS GCA 90 bp | ATCCAACTCGAAGGATATCTGTCCCTGGTTGTGTCGGTCGTTTGGTaGGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTGGCCCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: IQLEGYLSLVVSVVW*VCLPDSLGVSVAPS Trigger: AGAAGGGGCCACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGATATCCTTCGAGTTGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000671661.1 |
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| CDS CCA 90 bp | GAAATCCAACTCGAAGGATATCTGTCCCTGGTTGTGTCGGTCGTTTaGTGCGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTGGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: EIQLEGYLSLVVSVV*CVCLPDSLGVSVAP Trigger: AGGGGCCACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGATATCCTTCGAGTTGGATTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000671661.1 |
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| CDS CCA 90 bp | CACAGAGGTCCCACGCTGGGTGGGCTTTCCAGGCTTCTGACGAGTTaGCTTCCATCTTGTGGTGAGATTCTATCAGGCACGTCACTGGTA | + |
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Preference number: 5 (lower is better) Translates to: HRGPTLGGLSRLLTS*LPSCGEILSGTSLV Trigger: TACCAGTGACGTGCCTGATAGAATCTCACCACAAGATGGAAGCCAACTCGTCAGAAGCCTGGAAAGCCCACCCAGCGTGGGACCTCTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000430320.3 ENST00000438790.1 ENST00000634319.1 ENST00000634587.2 ENST00000634980.2 ENST00000635009.2 ENST00000635044.1 ENST00000635288.1 ENST00000635357.2 ENST00000658212.1 ENST00000659416.1 ENST00000659931.1 ENST00000667276.1 ENST00000671661.1 |
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| CDS CCA 90 bp | ACTGGCAGAACCCAGTCGAAATCCAACTCGAAGGATATCTGTCCCTaGTTGTGTCGGTCGTTTGGTGCGTCTGTCTCCCTGACTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: TGRTQSKSNSKDICP*LCRSFGASVSLTLL Trigger: CAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGATATCCTTCGAGTTGGATTTCGACTGGGTTCTGCCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671661.1 |
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| CDS CCA 90 bp | AGTTTCAGTGAGCTGAGATCATGTCATTTCACTCCAGCCTGTCCCTaGTTGTGTCGGTCGTTTGGTGCGTCTGTCTCCCTGACTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: SFSELRSCHFTPACP*LCRSFGASVSLTLL Trigger: CAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGCTGGAGTGAAATGACATGATCTCAGCTCACTGAAACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659931.1 |
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| CDS TCA 90 bp | CCACGACATGGGTGGGGTAAATTTATGTGGTTGAATCCAGAAGATTaGACCATGGGATACCATTCCAAGATCCTGGACCCACAGAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: PRHGWGKFMWLNPED*TMGYHSKILDPQRS Trigger: GGACCTCTGTGGGTCCAGGATCTTGGAATGGTATCCCATGGTTCAATCTTCTGGATTCAACCACATAAATTTACCCCACCCATGTCGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000430320.3 ENST00000438790.1 ENST00000634319.1 ENST00000634587.2 ENST00000634980.2 ENST00000635009.2 ENST00000635044.1 ENST00000635288.1 ENST00000635357.2 ENST00000658212.1 ENST00000659416.1 ENST00000659931.1 ENST00000667276.1 ENST00000671661.1 |
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| CDS TCA 90 bp | CCTGTAGCACACGCTGCATTCTCCCACCTGGATTTGAGTGCAGTATaGATGCTTCCAGCAGTGAGCATGTGTATAGTAATTACCACGTGG | + |
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Preference number: 5 (lower is better) Translates to: PVAHAAFSHLDLSAV*MLPAVSMCIVITTW Trigger: CCACGTGGTAATTACTATACACATGCTCACTGCTGGAAGCATTCATACTGCACTCAAATCCAGGTGGGAGAATGCAGCGTGTGCTACAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659931.1 ENST00000671661.1 |
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| CDS CCA 90 bp | CTCTCTCTGATGTTAGTTCCAGAATCTCGCATGGATACATCCCACTaGCAGAACCCAGTCGAAATCCAACTCGAAGGATATCTGTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: LSLMLVPESRMDTSH*QNPVEIQLEGYLSL Trigger: CAGGGACAGATATCCTTCGAGTTGGATTTCGACTGGGTTCTGCCAGTGGGATGTATCCATGCGAGATTCTGGAACTAACATCAGAGAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671661.1 |
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| CDS CCA 90 bp | CGAGTTGGCTTCCATCTTGTGGTGAGATTCTATCAGGCACGTCACTaGTACTTTCTAAACTCTTGCCGTTTGTCATCAATGCTGCTTGAC | + |
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Preference number: 5 (lower is better) Translates to: RVGFHLVVRFYQARH*YFLNSCRLSSMLLD Trigger: GTCAAGCAGCATTGATGACAAACGGCAAGAGTTTAGAAAGTACCAGTGACGTGCCTGATAGAATCTCACCACAAGATGGAAGCCAACTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 12 transcripts: ENST00000430320.3 ENST00000634319.1 ENST00000634587.2 ENST00000634980.2 ENST00000635009.2 ENST00000635044.1 ENST00000635288.1 ENST00000635357.2 ENST00000659416.1 ENST00000659931.1 ENST00000667276.1 ENST00000671661.1 |
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| CDS CCA 90 bp | CGAGTTGGCTTCCATCTTGTGGTGAGATTCTATCAGGCACGTCACTaGTACTTTCTAAACTCTTGCCGTTTGTCAGAAAATGGGCCTCAT | + |
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Preference number: 5 (lower is better) Translates to: RVGFHLVVRFYQARH*YFLNSCRLSENGPH Trigger: ATGAGGCCCATTTTCTGACAAACGGCAAGAGTTTAGAAAGTACCAGTGACGTGCCTGATAGAATCTCACCACAAGATGGAAGCCAACTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000438790.1 ENST00000658212.1 |
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| CDS CCA 90 bp | ACTGGCAGAACCCAGTCGAAATCCAACTCGAAGGATATCAGAAAATaGGCCTCATCAGTCTTCAGAAATCTGACCCAACAGATAGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: TGRTQSKSNSKDIRK*ASSVFRNLTQQIGN Trigger: GTTGCCTATCTGTTGGGTCAGATTTCTGAAGACTGATGAGGCCCATTTTCTGATATCCTTCGAGTTGGATTTCGACTGGGTTCTGCCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000634587.2 ENST00000635044.1 ENST00000635357.2 |
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| CDS GCA 90 bp | AGATTCACCTGTAGCACACGCTGCATTCTCCCACCTGGATTTGAGTaGAGTATGAATGCTTCCAGCAGTGAGCATGTGTATAGTAATTAC | + |
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Preference number: 5 (lower is better) Translates to: RFTCSTRCILPPGFE*SMNASSSEHVYSNY Trigger: GTAATTACTATACACATGCTCACTGCTGGAAGCATTCATACTGCACTCAAATCCAGGTGGGAGAATGCAGCGTGTGCTACAGGTGAATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659931.1 ENST00000671661.1 |
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| CDS CCA 90 bp | CTCTCTCTGATGTTAGTTCCAGAATCTCGCATGGATACATCCCACTaGCAGAACCCAGTCGAAATCCAACTCGAAGGATATCAGAAAATG | + |
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Preference number: 5 (lower is better) Translates to: LSLMLVPESRMDTSH*QNPVEIQLEGYQKM Trigger: CATTTTCTGATATCCTTCGAGTTGGATTTCGACTGGGTTCTGCCAGTGGGATGTATCCATGCGAGATTCTGGAACTAACATCAGAGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000634587.2 ENST00000635044.1 ENST00000635357.2 |
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| CDS CCA 90 bp | AGTTTCAGTGAGCTGAGATCATGTCATTTCACTCCAGCCAGAAAATaGGCCTCATCAGTCTTCAGAAATCTGACCCAACAGATAGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: SFSELRSCHFTPARK*ASSVFRNLTQQIGN Trigger: GTTGCCTATCTGTTGGGTCAGATTTCTGAAGACTGATGAGGCCCATTTTCTGGCTGGAGTGAAATGACATGATCTCAGCTCACTGAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000634980.2 ENST00000635288.1 ENST00000659416.1 ENST00000667276.1 |
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| CDS TCA 90 bp | TCAGTGGGTAGGTTTCTGTGCATTGATATTATTCAGTATAAGATGTaGAGGAGGTTTTCCTTCTGCACCACAACAAACATGTGCTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: SVGRFLCIDIIQYKM*RRFSFCTTTNMCCS Trigger: ACTGCAGCACATGTTTGTTGTGGTGCAGAAGGAAAACCTCCTTCACATCTTATACTGAATAATATCAATGCACAGAAACCTACCCACTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659931.1 ENST00000671661.1 |
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| CDS GCA 72 bp | GGCTCTCCCGCCCGGAGCTTCCTCCGAACATCCCTCTaGAACGCCGGCCTGGGCTGTCATAGCAACAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: GSPARSFLRTSL*NAGLGCHSNSP Trigger: CGGGCTGTTGCTATGACAGCCCAGGCCGGCGTTGCAGAGGGATGTTCGGAGGAAGCTCCGGGCGGGAGAGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000634587.2 |
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| CDS CCA 72 bp | GGGTCCCTGGGCCCCATCATAGTCTGGAAAGAGGAGTaGACGCGGCTCTCCCGCCCGGAGCTTCCTCCGAAC | + |
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Preference number: 6 (lower is better) Translates to: GSLGPIIVWKEE*TRLSRPELPPN Trigger: GTTCGGAGGAAGCTCCGGGCGGGAGAGCCGCGTCCACTCCTCTTTCCAGACTATGATGGGGCCCAGGGACCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634587.2 ENST00000634980.2 |
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| CDS GCA 72 bp | TCCTCCCTGCTGTCCCTGGTTGTGTCGGTCGTTTGGTaGGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: SSLLSLVVSVVW*VCLPDSLGVSV Trigger: CACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGCAGGGAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000634319.1 ENST00000635357.2 ENST00000659416.1 |
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| CDS GCA 72 bp | CACTCCAGCCTGTCCCTGGTTGTGTCGGTCGTTTGGTaGGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: HSSLSLVVSVVW*VCLPDSLGVSV Trigger: CACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGCTGGAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659931.1 |
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| CDS TCA 72 bp | CCTGGTTGTGTCGGTCGTTTGGTGCGTCTGTCTCCCTaGCTCTCTTGGGGTCTCGGTGGCCCCTTCTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: PGCVGRLVRLSP*LSWGLGGPFFL Trigger: CAAGAAGAAGGGGCCACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000430320.3 ENST00000635009.2 ENST00000635357.2 ENST00000658212.1 ENST00000659416.1 ENST00000659931.1 ENST00000671661.1 |
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| CDS GCA 72 bp | TGCTTGAACCTGTCCCTGGTTGTGTCGGTCGTTTGGTaGGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: CLNLSLVVSVVW*VCLPDSLGVSV Trigger: CACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGTTCAAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430320.3 |
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| CDS GCA 72 bp | TTTTCCTCCCTGTCCCTGGTTGTGTCGGTCGTTTGGTaGGTCTGTCTCCCTGACTCTCTTGGGGTCTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: FSSLSLVVSVVW*VCLPDSLGVSV Trigger: CACCGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGGAGGAAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000635288.1 ENST00000658212.1 |
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| CDS CCA 72 bp | TTTTCCTCCCTGCTGTCCCTGGTTGTGTCGGTCGTTTaGTGCGTCTGTCTCCCTGACTCTCTTGGGGTCTCG | + |
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Preference number: 6 (lower is better) Translates to: FSSLLSLVVSVV*CVCLPDSLGVS Trigger: CGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGCAGGGAGGAAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000634319.1 ENST00000635357.2 ENST00000659416.1 |
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| CDS CCA 72 bp | TTTCACTCCAGCCTGTCCCTGGTTGTGTCGGTCGTTTaGTGCGTCTGTCTCCCTGACTCTCTTGGGGTCTCG | + |
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Preference number: 6 (lower is better) Translates to: FHSSLSLVVSVV*CVCLPDSLGVS Trigger: CGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGCTGGAGTGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659931.1 |
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| CDS CCA 72 bp | CCCACGCTGGGTGGGCTTTCCAGGCTTCTGACGAGTTaGCTTCCATCTTGTGGTGAGATTCTATCAGGCACG | + |
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Preference number: 6 (lower is better) Translates to: PTLGGLSRLLTS*LPSCGEILSGT Trigger: CGTGCCTGATAGAATCTCACCACAAGATGGAAGCCAACTCGTCAGAAGCCTGGAAAGCCCACCCAGCGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000430320.3 ENST00000438790.1 ENST00000634319.1 ENST00000634587.2 ENST00000634980.2 ENST00000635009.2 ENST00000635044.1 ENST00000635288.1 ENST00000635357.2 ENST00000658212.1 ENST00000659416.1 ENST00000659931.1 ENST00000667276.1 ENST00000671661.1 |
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| CDS CCA 72 bp | AACTTTTCCTCCCTGTCCCTGGTTGTGTCGGTCGTTTaGTGCGTCTGTCTCCCTGACTCTCTTGGGGTCTCG | + |
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Preference number: 6 (lower is better) Translates to: NFSSLSLVVSVV*CVCLPDSLGVS Trigger: CGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGGAGGAAAAGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000635288.1 ENST00000658212.1 |
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| CDS CCA 72 bp | AAGAGTGAGACTCTGTCCCTGGTTGTGTCGGTCGTTTaGTGCGTCTGTCTCCCTGACTCTCTTGGGGTCTCG | + |
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Preference number: 6 (lower is better) Translates to: KSETLSLVVSVV*CVCLPDSLGVS Trigger: CGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGAGTCTCACTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635009.2 |
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| CDS CCA 72 bp | CTCGAAGGATATCTGTCCCTGGTTGTGTCGGTCGTTTaGTGCGTCTGTCTCCCTGACTCTCTTGGGGTCTCG | + |
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Preference number: 6 (lower is better) Translates to: LEGYLSLVVSVV*CVCLPDSLGVS Trigger: CGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGATATCCTTCGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671661.1 |
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| CDS CAA 90 bp | GGCAGAACCCAGTCGAAATCCAACTCGAAGGATATCTGTCCCTGGTaGTGTCGGTCGTTTGGTGCGTCTGTCTCCCTGACTCTCTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: GRTQSKSNSKDICPW*CRSFGASVSLTLLG Trigger: CCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGATATCCTTCGAGTTGGATTTCGACTGGGTTCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671661.1 |
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| CDS CCA 72 bp | AATTGCTTGAACCTGTCCCTGGTTGTGTCGGTCGTTTaGTGCGTCTGTCTCCCTGACTCTCTTGGGGTCTCG | + |
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Preference number: 6 (lower is better) Translates to: NCLNLSLVVSVV*CVCLPDSLGVS Trigger: CGAGACCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGTTCAAGCAATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430320.3 |
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| CDS CCA 72 bp | ATAGGCAACTTTTCCTCCCTGAGGAATTCTGATGCCTaGGCCAGCAGGAGCTCAGCTTTCCCCTTCTGGCCT | + |
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Preference number: 6 (lower is better) Translates to: IGNFSSLRNSDA*ASRSSAFPFWP Trigger: AGGCCAGAAGGGGAAAGCTGAGCTCCTGCTGGCCCAGGCATCAGAATTCCTCAGGGAGGAAAAGTTGCCTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000438790.1 ENST00000634587.2 ENST00000634980.2 |
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| CDS CAA 90 bp | TTCAGTGAGCTGAGATCATGTCATTTCACTCCAGCCTGTCCCTGGTaGTGTCGGTCGTTTGGTGCGTCTGTCTCCCTGACTCTCTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: FSELRSCHFTPACPW*CRSFGASVSLTLLG Trigger: CCCCAAGAGAGTCAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGGCTGGAGTGAAATGACATGATCTCAGCTCACTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659931.1 |
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| CDS TCA 72 bp | ACAGAGGTCCCACGCTGGGTGGGCTTTCCAGGCTTCTaGCGAGTTGGCTTCCATCTTGTGGTGAGATTCTAT | + |
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Preference number: 6 (lower is better) Translates to: TEVPRWVGFPGF*RVGFHLVVRFY Trigger: ATAGAATCTCACCACAAGATGGAAGCCAACTCGTCAGAAGCCTGGAAAGCCCACCCAGCGTGGGACCTCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000430320.3 ENST00000438790.1 ENST00000634319.1 ENST00000634587.2 ENST00000634980.2 ENST00000635009.2 ENST00000635044.1 ENST00000635288.1 ENST00000635357.2 ENST00000658212.1 ENST00000659416.1 ENST00000659931.1 ENST00000667276.1 ENST00000671661.1 |
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| CDS CCA 72 bp | ACCCAGTCGAAATCCAACTCGAAGGATATCTGTCCCTaGTTGTGTCGGTCGTTTGGTGCGTCTGTCTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: TQSKSNSKDICP*LCRSFGASVSL Trigger: CAGGGAGACAGACGCACCAAACGACCGACACAACCAGGGACAGATATCCTTCGAGTTGGATTTCGACTGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671661.1 |
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| CDS CAA 72 bp | AATAGGTTAGTGATGTTAAGTATGTATCCATCTGAATaGGACCTGGGCTGGGAGGGCCTCCAGGTCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: NRLVMLSMYPSE*DLGWEGLQVSG Trigger: CCCAGAGACCTGGAGGCCCTCCCAGCCCAGGTCCAATTCAGATGGATACATACTTAACATCACTAACCTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659931.1 ENST00000671661.1 |
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| CDS GCA 72 bp | TGTAGCACACGCTGCATTCTCCCACCTGGATTTGAGTaGAGTATGAATGCTTCCAGCAGTGAGCATGTGTAT | + |
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Preference number: 6 (lower is better) Translates to: CSTRCILPPGFE*SMNASSSEHVY Trigger: ATACACATGCTCACTGCTGGAAGCATTCATACTGCACTCAAATCCAGGTGGGAGAATGCAGCGTGTGCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659931.1 ENST00000671661.1 |
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| CDS CCA 72 bp | GAGCTGAGATCATGTCATTTCACTCCAGCCAGAAAATaGGCCTCATCAGTCTTCAGAAATCTGACCCAACAG | + |
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Preference number: 6 (lower is better) Translates to: ELRSCHFTPARK*ASSVFRNLTQQ Trigger: CTGTTGGGTCAGATTTCTGAAGACTGATGAGGCCCATTTTCTGGCTGGAGTGAAATGACATGATCTCAGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000634980.2 ENST00000635288.1 ENST00000659416.1 ENST00000667276.1 |
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| CDS TCA 72 bp | GGGTGGGGTAAATTTATGTGGTTGAATCCAGAAGATTaGACCATGGGATACCATTCCAAGATCCTGGACCCA | + |
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Preference number: 6 (lower is better) Translates to: GWGKFMWLNPED*TMGYHSKILDP Trigger: TGGGTCCAGGATCTTGGAATGGTATCCCATGGTTCAATCTTCTGGATTCAACCACATAAATTTACCCCACCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000430320.3 ENST00000438790.1 ENST00000634319.1 ENST00000634587.2 ENST00000634980.2 ENST00000635009.2 ENST00000635044.1 ENST00000635288.1 ENST00000635357.2 ENST00000658212.1 ENST00000659416.1 ENST00000659931.1 ENST00000667276.1 ENST00000671661.1 |
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| CDS TCA 72 bp | TGGGTCCACGACATGGGTGGGGTAAATTTATGTGGTTaGATCCAGAAGATTGAACCATGGGATACCATTCCA | + |
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Preference number: 6 (lower is better) Translates to: WVHDMGGVNLCG*IQKIEPWDTIP Trigger: TGGAATGGTATCCCATGGTTCAATCTTCTGGATTCAACCACATAAATTTACCCCACCCATGTCGTGGACCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000430320.3 ENST00000438790.1 ENST00000634319.1 ENST00000634587.2 ENST00000634980.2 ENST00000635009.2 ENST00000635044.1 ENST00000635288.1 ENST00000635357.2 ENST00000658212.1 ENST00000659416.1 ENST00000659931.1 ENST00000667276.1 ENST00000671661.1 |
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| CDS TCA 72 bp | CACGCTGCATTCTCCCACCTGGATTTGAGTGCAGTATaGATGCTTCCAGCAGTGAGCATGTGTATAGTAATT | + |
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Preference number: 6 (lower is better) Translates to: HAAFSHLDLSAV*MLPAVSMCIVI Trigger: AATTACTATACACATGCTCACTGCTGGAAGCATTCATACTGCACTCAAATCCAGGTGGGAGAATGCAGCGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659931.1 ENST00000671661.1 |
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| CDS CCA 72 bp | ACCCAGTCGAAATCCAACTCGAAGGATATCAGAAAATaGGCCTCATCAGTCTTCAGAAATCTGACCCAACAG | + |
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Preference number: 6 (lower is better) Translates to: TQSKSNSKDIRK*ASSVFRNLTQQ Trigger: CTGTTGGGTCAGATTTCTGAAGACTGATGAGGCCCATTTTCTGATATCCTTCGAGTTGGATTTCGACTGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000634587.2 ENST00000635044.1 ENST00000635357.2 |
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| CDS CCA 72 bp | TTCCATCTTGTGGTGAGATTCTATCAGGCACGTCACTaGTACTTTCTAAACTCTTGCCGTTTGTCATCAATG | + |
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Preference number: 6 (lower is better) Translates to: FHLVVRFYQARH*YFLNSCRLSSM Trigger: CATTGATGACAAACGGCAAGAGTTTAGAAAGTACCAGTGACGTGCCTGATAGAATCTCACCACAAGATGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 12 transcripts: ENST00000430320.3 ENST00000634319.1 ENST00000634587.2 ENST00000634980.2 ENST00000635009.2 ENST00000635044.1 ENST00000635288.1 ENST00000635357.2 ENST00000659416.1 ENST00000659931.1 ENST00000667276.1 ENST00000671661.1 |
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| CDS CCA 72 bp | TTCCATCTTGTGGTGAGATTCTATCAGGCACGTCACTaGTACTTTCTAAACTCTTGCCGTTTGTCAGAAAAT | + |
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Preference number: 6 (lower is better) Translates to: FHLVVRFYQARH*YFLNSCRLSEN Trigger: ATTTTCTGACAAACGGCAAGAGTTTAGAAAGTACCAGTGACGTGCCTGATAGAATCTCACCACAAGATGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000438790.1 ENST00000658212.1 |
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