Pregenerated sensors for LINC01776 (Homo sapiens)
Ensembl gene IDs: ENSG00000226053Ensembl transcript IDs: ENST00000418344.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTGGGTTCCATGTGGCTGGGGAGGTCTGACAATCATGGTGGAAGGTaGAAGGCACATCTCACATGGTGCCACACAAAAGAAGAGGGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: VGSMWLGRSDNHGGR*KAHLTWCHTKEEGL Trigger: CAAGCCCTCTTCTTTTGTGTGGCACCATGTGAGATGTGCCTTTCACCTTCCACCATGATTGTCAGACCTCCCCAGCCACATGGAACCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS TCA 90 bp | AAGCAGGTAGTTGGGACAAGTGGGTTCCATGTGGCTGGGGAGGTCTaGCAATCATGGTGGAAGGTGAAAGGCACATCTCACATGGTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: KQVVGTSGFHVAGEV*QSWWKVKGTSHMVP Trigger: TGGCACCATGTGAGATGTGCCTTTCACCTTCCACCATGATTGTCAGACCTCCCCAGCCACATGGAACCCACTTGTCCCAACTACCTGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS TCA 90 bp | GGAAACCACCACCCTGATCCAATTACCTCCACCCTGTCCTGCCCTTaGCATGTGGGGATTATGGAGATTACAATTCAAGGTGAGATTTGG | + |
|
Preference number: 5 (lower is better) Translates to: GNHHPDPITSTLSCP*HVGIMEITIQGEIW Trigger: CCAAATCTCACCTTGAATTGTAATCTCCATAATCCCCACATGTCAAGGGCAGGACAGGGTGGAGGTAATTGGATCAGGGTGGTGGTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS TCA 90 bp | AGGTTTGTTGAAGATCAGATGGTTGTAGGTGTGCAGTCTTATTTCTaGGTTCTCTTTTCATTCCTTTGGTCTATGTGCCTGTTTTTGTAC | + |
|
Preference number: 5 (lower is better) Translates to: RFVEDQMVVGVQSYF*VLFSFLWSMCLFLY Trigger: GTACAAAAACAGGCACATAGACCAAAGGAATGAAAAGAGAACTCAGAAATAAGACTGCACACCTACAACCATCTGATCTTCAACAAACCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS GCA 90 bp | TCTGACTCAGATAAAGGAAGTGTGTTCACTTGGGGCAGACCACACTaGTACTTGCTAATTTTTCTCCCTAACTTATGTTTATTGAATAAC | + |
|
Preference number: 5 (lower is better) Translates to: SDSDKGSVFTWGRPH*YLLIFLPNLCLLNN Trigger: GTTATTCAATAAACATAAGTTAGGGAGAAAAATTAGCAAGTAGCAGTGTGGTCTGCCCCAAGTGAACACACTTCCTTTATCTGAGTCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS TCA 72 bp | GTTGGGACAAGTGGGTTCCATGTGGCTGGGGAGGTCTaGCAATCATGGTGGAAGGTGAAAGGCACATCTCAC | + |
|
Preference number: 6 (lower is better) Translates to: VGTSGFHVAGEV*QSWWKVKGTSH Trigger: GTGAGATGTGCCTTTCACCTTCCACCATGATTGTCAGACCTCCCCAGCCACATGGAACCCACTTGTCCCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS CCA 72 bp | GAAGCAGGTAGTTGGGACAAGTGGGTTCCATGTGGCTaGGGAGGTCTGACAATCATGGTGGAAGGTGAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: EAGSWDKWVPCG*GGLTIMVEGER Trigger: CCTTTCACCTTCCACCATGATTGTCAGACCTCCCCAGCCACATGGAACCCACTTGTCCCAACTACCTGCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS TCA 72 bp | GACAGCTTGGTTGCTGGCCTTGCATGGAGGGTTCAATaGTGCCATCAAGAACCCAGGCTTCTTCCATCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: DSLVAGLAWRVQ*CHQEPRLLPSF Trigger: GAAAGATGGAAGAAGCCTGGGTTCTTGATGGCATCATTGAACCCTCCATGCAAGGCCAGCAACCAAGCTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS TCA 72 bp | ATGTGGCTGGGGAGGTCTGACAATCATGGTGGAAGGTaGAAGGCACATCTCACATGGTGCCACACAAAAGAA | + |
|
Preference number: 6 (lower is better) Translates to: MWLGRSDNHGGR*KAHLTWCHTKE Trigger: TTCTTTTGTGTGGCACCATGTGAGATGTGCCTTTCACCTTCCACCATGATTGTCAGACCTCCCCAGCCACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS CCA 72 bp | ATCCAATTACCTCCACCCTGTCCTGCCCTTGACATGTaGGGATTATGGAGATTACAATTCAAGGTGAGATTT | + |
|
Preference number: 6 (lower is better) Translates to: IQLPPPCPALDM*GLWRLQFKVRF Trigger: AAATCTCACCTTGAATTGTAATCTCCATAATCCCCACATGTCAAGGGCAGGACAGGGTGGAGGTAATTGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS CAA 72 bp | GTGCCTCCAGGTTTGTTCTTTTTGTTTAGGATTGTCTaGGCTATTTGGGCTCATTTTTGGTTCCATATGGCT | + |
|
Preference number: 6 (lower is better) Translates to: VPPGLFFLFRIV*AIWAHFWFHMA Trigger: AGCCATATGGAACCAAAAATGAGCCCAAATAGCCAAGACAATCCTAAACAAAAAGAACAAACCTGGAGGCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS CAA 72 bp | GTATGGTGCCTCCAGGTTTGTTCTTTTTGTTTAGGATaGTCTTGGCTATTTGGGCTCATTTTTGGTTCCATA | + |
|
Preference number: 6 (lower is better) Translates to: VWCLQVCSFCLG*SWLFGLIFGSI Trigger: TATGGAACCAAAAATGAGCCCAAATAGCCAAGACAATCCTAAACAAAAAGAACAAACCTGGAGGCACCATAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS CAA 90 bp | ATGCCATCAAGAACCCAGGCTTCTTCCATCTTTCCCCTTCATCATTaGATACATGTTGATTTTTCATTCTTCAGTTTGCCATCTTGTGTT | + |
|
Preference number: 6 (lower is better) Translates to: MPSRTQASSIFPLHH*IHVDFSFFSLPSCV Trigger: AACACAAGATGGCAAACTGAAGAATGAAAAATCAACATGTATCAAATGATGAAGGGGAAAGATGGAAGAAGCCTGGGTTCTTGATGGCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||
| CDS CAA 90 bp | TCAGATAAAGGAAGTGTGTTCACTTGGGGCAGACCACACTGCTACTaGCTAATTTTTCTCCCTAACTTATGTTTATTGAATAACATGTAT | + |
|
Preference number: 6 (lower is better) Translates to: SDKGSVFTWGRPHCY*LIFLPNLCLLNNMY Trigger: ATACATGTTATTCAATAAACATAAGTTAGGGAGAAAAATTAGCAAGTAGCAGTGTGGTCTGCCCCAAGTGAACACACTTCCTTTATCTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000418344.1 |
||