Pregenerated sensors for LINC01770 (Homo sapiens)
Ensembl gene IDs: ENSG00000225285Ensembl transcript IDs: ENST00000417917.1, ENST00000430109.1, ENST00000434150.1, ENST00000454562.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GAGGCCAGCTCCCTTGGCTGCTGGGCAGGGTCTTCTGTCCACAGCTaGCTCAGGCGGCTGTTTCCAAAGGTGTTTCCAGCTTCCCAGGCC | + |
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Preference number: 5 (lower is better) Translates to: EASSLGCWAGSSVHS*LRRLFPKVFPASQA Trigger: GGCCTGGGAAGCTGGAAACACCTTTGGAAACAGCCGCCTGAGGCAGCTGTGGACAGAAGACCCTGCCCAGCAGCCAAGGGAGCTGGCCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000417917.1 ENST00000434150.1 |
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| CDS GCA 72 bp | GCCAGCTTCCGGTCAGACCCCAGGTCCTCCAGCGGCTaGGGCCTTCAGCGTCATCTCCACGGCAGCCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: ASFRSDPRSSSG*GLQRHLHGSPC Trigger: ACAGGGGCTGCCGTGGAGATGACGCTGAAGGCCGCAGCCGCTGGAGGACCTGGGGTCTGACCGGAAGCTGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000417917.1 ENST00000430109.1 ENST00000454562.1 |
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| CDS GCA 72 bp | CGGAGAGCAGAGGCCTGGACGTGCCTCCGCAGGGTCTaGAGCCAGCTTCCGGTCAGACCCCAGGTCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: RRAEAWTCLRRV*SQLPVRPQVLQ Trigger: CTGGAGGACCTGGGGTCTGACCGGAAGCTGGCTGCAGACCCTGCGGAGGCACGTCCAGGCCTCTGCTCTCCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000417917.1 |
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| CDS CCA 72 bp | CCCCCACCGGGCCCAGGCGGAAGCACCAGGCATTTCTaGTCCCAGCCGAGGTCTGAGGTCTGTGGAGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: PPPGPGGSTRHF*SQPRSEVCGAQ Trigger: CTGCGCTCCACAGACCTCAGACCTCGGCTGGGACCAGAAATGCCTGGTGCTTCCGCCTGGGCCCGGTGGGGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000417917.1 ENST00000430109.1 ENST00000454562.1 |
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| CDS GCA 72 bp | GGGCCTGTGGGCGGTTCACAGAGGGATGTAGGAACGTaGCTGTGGGAGGCCGTAGCCCCGGAGAGCAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: GPVGGSQRDVGT*LWEAVAPESRG Trigger: GCCTCTGCTCTCCGGGGCTACGGCCTCCCACAGGCACGTTCCTACATCCCTCTGTGAACCGCCCACAGGCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000417917.1 ENST00000434150.1 |
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| CDS TCA 72 bp | AGCTCTTGGCTGAGGATCCGCCTGGTCCCGGAGCCGTaGAAACAACAGCTGGGCCTGGTGGGGGTGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SSWLRIRLVPEP*KQQLGLVGVGR Trigger: CCTCCCCACCCCCACCAGGCCCAGCTGTTGTTTTCACGGCTCCGGGACCAGGCGGATCCTCAGCCAAGAGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434150.1 |
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| CDS GCA 72 bp | AACAACAGCTGGGCCTGGACGTGCCTCCGCAGGGTCTaGAGCCAGCTTCCGGTCAGACCCCAGGTCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: NNSWAWTCLRRV*SQLPVRPQVLQ Trigger: CTGGAGGACCTGGGGTCTGACCGGAAGCTGGCTGCAGACCCTGCGGAGGCACGTCCAGGCCCAGCTGTTGTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000454562.1 |
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| CDS TCA 72 bp | AGCTCTTGGCTGAGGATCCGCCTGGTCCCGGAGCCGTaGAAACAACAGCTGGGCCTCCGCAGGGTCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SSWLRIRLVPEP*KQQLGLRRVCS Trigger: GCTGCAGACCCTGCGGAGGCCCAGCTGTTGTTTTCACGGCTCCGGGACCAGGCGGATCCTCAGCCAAGAGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430109.1 |
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| CDS TCA 72 bp | AGCTCTTGGCTGAGGATCCGCCTGGTCCCGGAGCCGTaGAAACAACAGCTGGGCCTGGACGTGCCTCCGCAG | + |
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Preference number: 6 (lower is better) Translates to: SSWLRIRLVPEP*KQQLGLDVPPQ Trigger: CTGCGGAGGCACGTCCAGGCCCAGCTGTTGTTTTCACGGCTCCGGGACCAGGCGGATCCTCAGCCAAGAGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454562.1 |
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| CDS CAA 72 bp | CTAGGGGTTGAAGATGAGGGCTCTCCTGGGAAGCTCTaGGCTGAGGATCCGCCTGGTCCCGGAGCCGTGAAA | + |
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Preference number: 6 (lower is better) Translates to: LGVEDEGSPGKL*AEDPPGPGAVK Trigger: TTTCACGGCTCCGGGACCAGGCGGATCCTCAGCCAAGAGCTTCCCAGGAGAGCCCTCATCTTCAACCCCTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000430109.1 ENST00000434150.1 ENST00000454562.1 |
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| CDS CAA 90 bp | TGGTCGCCACTAGGGGTTGAAGATGAGGGCTCTCCTGGGAAGCTCTaGGCTGAGGATCCGCCTGGTCCCGGAGCCGTGAAAACAACAGCT | + |
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Preference number: 6 (lower is better) Translates to: WSPLGVEDEGSPGKL*AEDPPGPGAVKTTA Trigger: AGCTGTTGTTTTCACGGCTCCGGGACCAGGCGGATCCTCAGCCAAGAGCTTCCCAGGAGAGCCCTCATCTTCAACCCCTAGTGGCGACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000430109.1 ENST00000434150.1 ENST00000454562.1 |
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