Pregenerated sensors for LINC01754 (Homo sapiens)
Ensembl gene IDs: ENSG00000224565Ensembl transcript IDs: ENST00000437920.1, ENST00000655691.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTCCCTTTTATCTCTCGCTGGAACACAGACTGGTGCCCCACTTCGTaGTTGGGATGTCCTTCCTCTGTTTCTTGGCTGAGTCGAACTTGT | + |
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Preference number: 5 (lower is better) Translates to: LPFISRWNTDWCPTS*LGCPSSVSWLSRTC Trigger: ACAAGTTCGACTCAGCCAAGAAACAGAGGAAGGACATCCCAAGCACGAAGTGGGGCACCAGTCTGTGTTCCAGCGAGAGATAAAAGGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437920.1 |
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| CDS CCA 90 bp | AGGTATCATGTGAGTATTCAAAGCAGGAAGAGGCAGGAAAAGGGCTaGAGCCAGTTGTGTCTCTCCCTTTTATCTCTCGCTGGAACACAG | + |
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Preference number: 5 (lower is better) Translates to: RYHVSIQSRKRQEKG*SQLCLSLLSLAGTQ Trigger: CTGTGTTCCAGCGAGAGATAAAAGGGAGAGACACAACTGGCTCCAGCCCTTTTCCTGCCTCTTCCTGCTTTGAATACTCACATGATACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437920.1 |
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| CDS TCA 90 bp | AACAGTCTACTTTATTTCCCATTTAGTAGTCCATCTATAAGGGGTTaGGAGCTATTTGGGTGGCTTCCTGTTCTCTGGCTGGGCCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: NSLLYFPFSSPSIRG*ELFGWLPVLWLGPR Trigger: CCTGGGGCCCAGCCAGAGAACAGGAAGCCACCCAAATAGCTCTCAACCCCTTATAGATGGACTACTAAATGGGAAATAAAGTAGACTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000437920.1 ENST00000655691.1 |
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| CDS CCA 90 bp | TCCTTTCCTCTGGACAGGATGTTCCCATTGACTCCTGTATTCCATTaGTTAAGAAAAGCTTCTGGTGGCTTTAAGTCCCTAACACTTTTT | + |
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Preference number: 5 (lower is better) Translates to: SFPLDRMFPLTPVFH*LRKASGGFKSLTLF Trigger: AAAAAGTGTTAGGGACTTAAAGCCACCAGAAGCTTTTCTTAACCAATGGAATACAGGAGTCAATGGGAACATCCTGTCCAGAGGAAAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437920.1 |
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| CDS GCA 72 bp | GTTCTCTGGCTGGGCCCCAGGCTCCTCCTATCTTGTTaGTCAGTGTCCTCAACACATGGCTTCCACCTTAGG | + |
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Preference number: 6 (lower is better) Translates to: VLWLGPRLLLSC*SVSSTHGFHLR Trigger: CCTAAGGTGGAAGCCATGTGTTGAGGACACTGAGCAACAAGATAGGAGGAGCCTGGGGCCCAGCCAGAGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000437920.1 ENST00000655691.1 |
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| CDS CCA 72 bp | CTGGAGCCAGTTGTGTCTCTCCCTTTTATCTCTCGCTaGAACACAGACTGGTGCCCCACTTCGTGCTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: LEPVVSLPFISR*NTDWCPTSCLG Trigger: TCCCAAGCACGAAGTGGGGCACCAGTCTGTGTTCCAGCGAGAGATAAAAGGGAGAGACACAACTGGCTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437920.1 |
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| CDS CCA 72 bp | GTGAGTATTCAAAGCAGGAAGAGGCAGGAAAAGGGCTaGAGCCAGTTGTGTCTCTCCCTTTTATCTCTCGCT | + |
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Preference number: 6 (lower is better) Translates to: VSIQSRKRQEKG*SQLCLSLLSLA Trigger: AGCGAGAGATAAAAGGGAGAGACACAACTGGCTCCAGCCCTTTTCCTGCCTCTTCCTGCTTTGAATACTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437920.1 |
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| CDS CCA 72 bp | TTCCCCAAAAATCTGGAGGTAAGTATCTGCTGTCGCTaGCGGAACAATACCAGTGCTGGCTATTCTGTGATC | + |
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Preference number: 6 (lower is better) Translates to: FPKNLEVSICCR*RNNTSAGYSVI Trigger: GATCACAGAATAGCCAGCACTGGTATTGTTCCGCCAGCGACAGCAGATACTTACCTCCAGATTTTTGGGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000437920.1 ENST00000655691.1 |
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| CDS CCA 72 bp | AAGTATCTGCTGTCGCTGGCGGAACAATACCAGTGCTaGCTATTCTGTGATCATCTTGGCTTTTCTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: KYLLSLAEQYQC*LFCDHLGFSSW Trigger: CCAAGAAGAAAAGCCAAGATGATCACAGAATAGCCAGCACTGGTATTGTTCCGCCAGCGACAGCAGATACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000437920.1 ENST00000655691.1 |
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| CDS TCA 72 bp | CTTTATTTCCCATTTAGTAGTCCATCTATAAGGGGTTaGGAGCTATTTGGGTGGCTTCCTGTTCTCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: LYFPFSSPSIRG*ELFGWLPVLWL Trigger: CAGCCAGAGAACAGGAAGCCACCCAAATAGCTCTCAACCCCTTATAGATGGACTACTAAATGGGAAATAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000437920.1 ENST00000655691.1 |
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| CDS CCA 72 bp | GTGAGTATTCAAAGCAGGAAGAGGCAGGAAAAGGGCTaGAGCCAGTTGTGTCTCTCCCTTTTATTGTTATTA | + |
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Preference number: 6 (lower is better) Translates to: VSIQSRKRQEKG*SQLCLSLLLLL Trigger: TAATAACAATAAAAGGGAGAGACACAACTGGCTCCAGCCCTTTTCCTGCCTCTTCCTGCTTTGAATACTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655691.1 |
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| CDS GCA 72 bp | TATTGTTATTATGGCACCATCATTATTAATTATGCCTaGAATGCCTCCTTTATGCAGAGAGTAACAATGCAT | + |
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Preference number: 6 (lower is better) Translates to: YCYYGTIIINYA*NASFMQRVTMH Trigger: ATGCATTGTTACTCTCTGCATAAAGGAGGCATTGCAGGCATAATTAATAATGATGGTGCCATAATAACAATA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655691.1 |
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