Pregenerated sensors for LINC01742 (Homo sapiens)
Ensembl gene IDs: ENSG00000275852Ensembl transcript IDs: ENST00000616333.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AACCAAGGAACGGATAGGTTACTCGTACGTTCAAGGTCACACAGCTaGCAAGAGCTGACATTCCAATCAGGGACATCTGGGTTCCAGAGT | + |
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Preference number: 5 (lower is better) Translates to: NQGTDRLLVRSRSHS*QELTFQSGTSGFQS Trigger: ACTCTGGAACCCAGATGTCCCTGATTGGAATGTCAGCTCTTGCCAGCTGTGTGACCTTGAACGTACGAGTAACCTATCCGTTCCTTGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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| CDS CCA 90 bp | GGCAAGGGAAAGGAAGGTGGACACGTGACACACAGTGATGTTCCTTaGTTGACTAGGGCCTTACTGCACAACAGTAGGACTTATTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: GKGKEGGHVTHSDVP*LTRALLHNSRTYFP Trigger: AGGAAAATAAGTCCTACTGTTGTGCAGTAAGGCCCTAGTCAACCAAGGAACATCACTGTGTGTCACGTGTCCACCTTCCTTTCCCTTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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| CDS CCA 90 bp | GCCTTACTGCACAACAGTAGGACTTATTTTCCTCCTGACATCTCTTaGCTCTCCTTTTTGCTAGTTGGCTTCATGATCAGGCAGGATGAG | + |
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Preference number: 5 (lower is better) Translates to: ALLHNSRTYFPPDIS*LSFLLVGFMIRQDE Trigger: CTCATCCTGCCTGATCATGAAGCCAACTAGCAAAAAGGAGAGCCAAGAGATGTCAGGAGGAAAATAAGTCCTACTGTTGTGCAGTAAGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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| CDS CCA 72 bp | CAGCTGGCAAGAGCTGACATTCCAATCAGGGACATCTaGGTTCCAGAGTCTAGCCCTTATGCATGGTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: QLARADIPIRDI*VPESSPYAWCC Trigger: GCAGCACCATGCATAAGGGCTAGACTCTGGAACCCAGATGTCCCTGATTGGAATGTCAGCTCTTGCCAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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| CDS TCA 72 bp | CTCCTTTTTGCTAGTTGGCTTCATGATCAGGCAGGATaGGTTCTAAGTGACAGCAGGGGTGGTCTCCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LLFASWLHDQAG*VLSDSRGGLQQ Trigger: CTGCTGGAGACCACCCCTGCTGTCACTTAGAACTCATCCTGCCTGATCATGAAGCCAACTAGCAAAAAGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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| CDS CCA 72 bp | ACGGATAGGTTACTCGTACGTTCAAGGTCACACAGCTaGCAAGAGCTGACATTCCAATCAGGGACATCTGGG | + |
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Preference number: 6 (lower is better) Translates to: TDRLLVRSRSHS*QELTFQSGTSG Trigger: CCCAGATGTCCCTGATTGGAATGTCAGCTCTTGCCAGCTGTGTGACCTTGAACGTACGAGTAACCTATCCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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| CDS CCA 72 bp | AAGGAAGGTGGACACGTGACACACAGTGATGTTCCTTaGTTGACTAGGGCCTTACTGCACAACAGTAGGACT | + |
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Preference number: 6 (lower is better) Translates to: KEGGHVTHSDVP*LTRALLHNSRT Trigger: AGTCCTACTGTTGTGCAGTAAGGCCCTAGTCAACCAAGGAACATCACTGTGTGTCACGTGTCCACCTTCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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| CDS CAA 72 bp | GAAGGTGGACACGTGACACACAGTGATGTTCCTTGGTaGACTAGGGCCTTACTGCACAACAGTAGGACTTAT | + |
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Preference number: 6 (lower is better) Translates to: EGGHVTHSDVPW*TRALLHNSRTY Trigger: ATAAGTCCTACTGTTGTGCAGTAAGGCCCTAGTCAACCAAGGAACATCACTGTGTGTCACGTGTCCACCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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| CDS CAA 90 bp | AAGGGAAAGGAAGGTGGACACGTGACACACAGTGATGTTCCTTGGTaGACTAGGGCCTTACTGCACAACAGTAGGACTTATTTTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: KGKEGGHVTHSDVPW*TRALLHNSRTYFPP Trigger: AGGAGGAAAATAAGTCCTACTGTTGTGCAGTAAGGCCCTAGTCAACCAAGGAACATCACTGTGTGTCACGTGTCCACCTTCCTTTCCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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| CDS CCA 72 bp | CACAACAGTAGGACTTATTTTCCTCCTGACATCTCTTaGCTCTCCTTTTTGCTAGTTGGCTTCATGATCAGG | + |
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Preference number: 6 (lower is better) Translates to: HNSRTYFPPDIS*LSFLLVGFMIR Trigger: CCTGATCATGAAGCCAACTAGCAAAAAGGAGAGCCAAGAGATGTCAGGAGGAAAATAAGTCCTACTGTTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000616333.1 |
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