Pregenerated sensors for LINC01741 (Homo sapiens)
Ensembl gene IDs: ENSG00000236720Ensembl transcript IDs: ENST00000427173.1, ENST00000654430.1, ENST00000670282.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CAGGCAGTGGGACAGGGAGTGGGCTGGAGGACATGGCCTGCTTGCTaGGGAGGTCATGGAGAGATAGGAGGGATCTGCTTCTGCTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: QAVGQGVGWRTWPAC*GGHGEIGGICFCSS Trigger: AGAAGAGCAGAAGCAGATCCCTCCTATCTCTCCATGACCTCCTCAGCAAGCAGGCCATGTCCTCCAGCCCACTCCCTGTCCCACTGCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CCA 90 bp | GCTCCACCTTCCCTGGAAGACCAGGTAGGAAGCTCAGCTGTGAGTTaGCTCCAAGGCAGTCCTGCTCATGGCATGCCAGTGTCTTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: APPSLEDQVGSSAVS*LQGSPAHGMPVSSP Trigger: AGGGGAAGACACTGGCATGCCATGAGCAGGACTGCCTTGGAGCCAACTCACAGCTGAGCTTCCTACCTGGTCTTCCAGGGAAGGTGGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CCA 90 bp | CACAATGCCTATTTTGATGCCCAAACAGTTAACTGCCCTTTACGCTaGTGCTATGAGGAGGTCAAGCTTCTTGAAGCTCCACCTTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: HNAYFDAQTVNCPLR*CYEEVKLLEAPPSL Trigger: CAGGGAAGGTGGAGCTTCAAGAAGCTTGACCTCCTCATAGCACCAGCGTAAAGGGCAGTTAACTGTTTGGGCATCAAAATAGGCATTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS GCA 90 bp | AATGCCTATTTTGATGCCCAAACAGTTAACTGCCCTTTACGCTGGTaGTATGAGGAGGTCAAGCTTCTTGAAGCTCCACCTTCCCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: NAYFDAQTVNCPLRW*YEEVKLLEAPPSLE Trigger: TTCCAGGGAAGGTGGAGCTTCAAGAAGCTTGACCTCCTCATAGCACCAGCGTAAAGGGCAGTTAACTGTTTGGGCATCAAAATAGGCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS TCA 90 bp | GGTTCCCAGATTCACTGCGCAACCATGGGCTTTATAAAGTATTCTTaGGGCTCTCCTAGTCAGTCAGTGCCATTGAAGGCTATTCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: GSQIHCATMGFIKYS*GSPSQSVPLKAILR Trigger: TCTGAGAATAGCCTTCAATGGCACTGACTGACTAGGAGAGCCTCAAGAATACTTTATAAAGCCCATGGTTGCGCAGTGAATCTGGGAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000427173.1 ENST00000654430.1 ENST00000670282.1 |
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| CDS CCA 90 bp | ATCATGACTCTGCTCTCAATCCAAGGAATATCACATGTGCCGTGCTaGGACAGTACCAGGCAGAAAAGCACCAGGTTTCTCCTTATAGTA | + |
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Preference number: 5 (lower is better) Translates to: IMTLLSIQGISHVPC*DSTRQKSTRFLLIV Trigger: TACTATAAGGAGAAACCTGGTGCTTTTCTGCCTGGTACTGTCCCAGCACGGCACATGTGATATTCCTTGGATTGAGAGCAGAGTCATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427173.1 |
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| CDS TCA 90 bp | CCCTTTCAATCACTTGTAGCTCAGGCCATTGGCCTCGAAATACTCTaGGCTGCACAAAAGAGAACTGGTAACAATAGCCAGAAAGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: PFQSLVAQAIGLEIL*AAQKRTGNNSQKVQ Trigger: CTGAACTTTCTGGCTATTGTTACCAGTTCTCTTTTGTGCAGCTCAGAGTATTTCGAGGCCAATGGCCTGAGCTACAAGTGATTGAAAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000427173.1 ENST00000654430.1 ENST00000670282.1 |
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| CDS TCA 90 bp | AGTCAGCAATATAGCTGGCTTACATTAAGCCCTTTTACCGGTGAGTaGGCAGTCATGTGGACCAAATCTTTCGAGGAATCACCTGAACCT | + |
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Preference number: 5 (lower is better) Translates to: SQQYSWLTLSPFTGE*AVMWTKSFEESPEP Trigger: AGGTTCAGGTGATTCCTCGAAAGATTTGGTCCACATGACTGCTCACTCACCGGTAAAAGGGCTTAATGTAAGCCAGCTATATTGCTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000427173.1 ENST00000654430.1 ENST00000670282.1 |
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| CDS GCA 90 bp | ATTATCATGACTCTGCTCTCAATCCAAGGAATATCACATGTGCCGTaGTGGGACAGTACCAGGCAGAAAAGCACCAGGTTTCTCCTTATA | + |
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Preference number: 5 (lower is better) Translates to: IIMTLLSIQGISHVP*WDSTRQKSTRFLLI Trigger: TATAAGGAGAAACCTGGTGCTTTTCTGCCTGGTACTGTCCCAGCACGGCACATGTGATATTCCTTGGATTGAGAGCAGAGTCATGATAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427173.1 |
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| CDS GCA 90 bp | GGAAGAGAACAGCCAGAAGAGAGTCAGGATATGCAGGAAGCTATGTaGCAAGGGAGATCCCTCAAGTATTTGGCTCTAGAAAGATTGTTT | + |
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Preference number: 5 (lower is better) Translates to: GREQPEESQDMQEAM*QGRSLKYLALERLF Trigger: AAACAATCTTTCTAGAGCCAAATACTTGAGGGATCTCCCTTGGCACATAGCTTCCTGCATATCCTGACTCTCTTCTGGCTGTTCTCTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS GCA 90 bp | CACAACAACTCACACAATGCCTATTTTGATGCCCAAACAGTTAACTaGCCTTTACGCTGGTGCTATGAGGAGGTCAAGCTTCTTGAAGCT | + |
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Preference number: 5 (lower is better) Translates to: HNNSHNAYFDAQTVN*PLRWCYEEVKLLEA Trigger: AGCTTCAAGAAGCTTGACCTCCTCATAGCACCAGCGTAAAGGGCAGTTAACTGTTTGGGCATCAAAATAGGCATTGTGTGAGTTGTTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CCA 90 bp | TTCTCCAGTGGTCCTGAATTAAATTCACCTTACATCTTTGTAGGTTaGAAGAGAACAGCCAGAAGAGAGTCAGGATATGCAGGAAGCTAT | + |
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Preference number: 5 (lower is better) Translates to: FSSGPELNSPYIFVG*KRTARRESGYAGSY Trigger: ATAGCTTCCTGCATATCCTGACTCTCTTCTGGCTGTTCTCTTCCAACCTACAAAGATGTAAGGTGAATTTAATTCAGGACCACTGGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CCA 90 bp | AGCACCAGGTTTCTCCTTATAGTAGAAAGACAGCTGTTTCCCAAATaGAAGGTACTCCTGCATTTTCGTTTAATATTTTCTTTATGGTTT | + |
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Preference number: 5 (lower is better) Translates to: STRFLLIVERQLFPK*KVLLHFRLIFSLWF Trigger: AAACCATAAAGAAAATATTAAACGAAAATGCAGGAGTACCTTCCATTTGGGAAACAGCTGTCTTTCTACTATAAGGAGAAACCTGGTGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000427173.1 |
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| CDS CAA 90 bp | AGCTCCACCTTCCCTGGAAGACCAGGTAGGAAGCTCAGCTGTGAGTaGGCTCCAAGGCAGTCCTGCTCATGGCATGCCAGTGTCTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: SSTFPGRPGRKLSCE*APRQSCSWHASVFP Trigger: GGGGAAGACACTGGCATGCCATGAGCAGGACTGCCTTGGAGCCAACTCACAGCTGAGCTTCCTACCTGGTCTTCCAGGGAAGGTGGAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CCA 72 bp | TCCCTGGAAGACCAGGTAGGAAGCTCAGCTGTGAGTTaGCTCCAAGGCAGTCCTGCTCATGGCATGCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: SLEDQVGSSAVS*LQGSPAHGMPV Trigger: CACTGGCATGCCATGAGCAGGACTGCCTTGGAGCCAACTCACAGCTGAGCTTCCTACCTGGTCTTCCAGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS TCA 72 bp | TGCTCATGGCATGCCAGTGTCTTCCCCTCTCAACTCTaGGAGCACTCCACACTCCAGAGAGCCAAGAGACCG | + |
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Preference number: 6 (lower is better) Translates to: CSWHASVFPSQL*EHSTLQRAKRP Trigger: CGGTCTCTTGGCTCTCTGGAGTGTGGAGTGCTCTCAGAGTTGAGAGGGGAAGACACTGGCATGCCATGAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS GCA 72 bp | AGGAAGCTCAGCTGTGAGTTGGCTCCAAGGCAGTCCTaGTCATGGCATGCCAGTGTCTTCCCCTCTCAACTC | + |
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Preference number: 6 (lower is better) Translates to: RKLSCELAPRQS*SWHASVFPSQL Trigger: GAGTTGAGAGGGGAAGACACTGGCATGCCATGAGCAGGACTGCCTTGGAGCCAACTCACAGCTGAGCTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CAA 72 bp | TTCCCTGGAAGACCAGGTAGGAAGCTCAGCTGTGAGTaGGCTCCAAGGCAGTCCTGCTCATGGCATGCCAGT | + |
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Preference number: 6 (lower is better) Translates to: FPGRPGRKLSCE*APRQSCSWHAS Trigger: ACTGGCATGCCATGAGCAGGACTGCCTTGGAGCCAACTCACAGCTGAGCTTCCTACCTGGTCTTCCAGGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CCA 72 bp | CTGCTCTCAATCCAAGGAATATCACATGTGCCGTGCTaGGACAGTACCAGGCAGAAAAGCACCAGGTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: LLSIQGISHVPC*DSTRQKSTRFL Trigger: GAGAAACCTGGTGCTTTTCTGCCTGGTACTGTCCCAGCACGGCACATGTGATATTCCTTGGATTGAGAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427173.1 |
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| CDS GCA 72 bp | ACTCTGCTCTCAATCCAAGGAATATCACATGTGCCGTaGTGGGACAGTACCAGGCAGAAAAGCACCAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: TLLSIQGISHVP*WDSTRQKSTRF Trigger: AAACCTGGTGCTTTTCTGCCTGGTACTGTCCCAGCACGGCACATGTGATATTCCTTGGATTGAGAGCAGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427173.1 |
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| CDS TCA 72 bp | AGTATTCTTGAGGCTCTCCTAGTCAGTCAGTGCCATTaGAGGCTATTCTCAGACAACCCCACATCCTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: SILEALLVSQCH*RLFSDNPTSLH Trigger: GTGCAAGGATGTGGGGTTGTCTGAGAATAGCCTTCAATGGCACTGACTGACTAGGAGAGCCTCAAGAATACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000427173.1 ENST00000654430.1 ENST00000670282.1 |
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| CDS GCA 72 bp | TTTGATGCCCAAACAGTTAACTGCCCTTTACGCTGGTaGTATGAGGAGGTCAAGCTTCTTGAAGCTCCACCT | + |
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Preference number: 6 (lower is better) Translates to: FDAQTVNCPLRW*YEEVKLLEAPP Trigger: AGGTGGAGCTTCAAGAAGCTTGACCTCCTCATAGCACCAGCGTAAAGGGCAGTTAACTGTTTGGGCATCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CAA 90 bp | GTCACGTTGGTCTGGGGATACACAACAACTCACACAATGCCTATTTaGATGCCCAAACAGTTAACTGCCCTTTACGCTGGTGCTATGAGG | + |
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Preference number: 6 (lower is better) Translates to: VTLVWGYTTTHTMPI*MPKQLTALYAGAMR Trigger: CCTCATAGCACCAGCGTAAAGGGCAGTTAACTGTTTGGGCATCAAAATAGGCATTGTGTGAGTTGTTGTGTATCCCCAGACCAACGTGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CAA 90 bp | CCTTCTGGTGACACTGATTCCTCTCAGCTGGGATGGTCTTCCAAGTaGAGAGGACAGCCCTCACTACCCCGTTTAATATTTTCTTTATGG | + |
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Preference number: 6 (lower is better) Translates to: PSGDTDSSQLGWSSK*RGQPSLPRLIFSLW Trigger: CCATAAAGAAAATATTAAACGGGGTAGTGAGGGCTGTCCTCTCAACTTGGAAGACCATCCCAGCTGAGAGGAATCAGTGTCACCAGAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654430.1 |
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| CDS CAA 90 bp | GCAGTCATGTGGACCAAATCTTTCGAGGAATCACCTGAACCTAAGTaGCCCTTTCAATCACTTGTAGCTCAGGCCATTGGCCTCGAAATA | + |
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Preference number: 6 (lower is better) Translates to: AVMWTKSFEESPEPK*PFQSLVAQAIGLEI Trigger: TATTTCGAGGCCAATGGCCTGAGCTACAAGTGATTGAAAGGGCAACTTAGGTTCAGGTGATTCCTCGAAAGATTTGGTCCACATGACTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000427173.1 ENST00000654430.1 ENST00000670282.1 |
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| CDS TCA 72 bp | CTGTGTTGGGTCATCCACCAGCAGTGGCTATTATCATaGCTCTGCTCTCAATCCAAGGAATATCACATGTGC | + |
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Preference number: 6 (lower is better) Translates to: LCWVIHQQWLLS*LCSQSKEYHMC Trigger: GCACATGTGATATTCCTTGGATTGAGAGCAGAGTCATGATAATAGCCACTGCTGGTGGATGACCCAACACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427173.1 |
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| CDS CAA 72 bp | TGGACCAAATCTTTCGAGGAATCACCTGAACCTAAGTaGCCCTTTCAATCACTTGTAGCTCAGGCCATTGGC | + |
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Preference number: 6 (lower is better) Translates to: WTKSFEESPEPK*PFQSLVAQAIG Trigger: GCCAATGGCCTGAGCTACAAGTGATTGAAAGGGCAACTTAGGTTCAGGTGATTCCTCGAAAGATTTGGTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000427173.1 ENST00000654430.1 ENST00000670282.1 |
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| CDS TCA 72 bp | ATTCACTGCGCAACCATGGGCTTTATAAAGTATTCTTaGGGCTCTCCTAGTCAGTCAGTGCCATTGAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: IHCATMGFIKYS*GSPSQSVPLKA Trigger: AGCCTTCAATGGCACTGACTGACTAGGAGAGCCTCAAGAATACTTTATAAAGCCCATGGTTGCGCAGTGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000427173.1 ENST00000654430.1 ENST00000670282.1 |
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| CDS GCA 72 bp | TCACACAATGCCTATTTTGATGCCCAAACAGTTAACTaGCCTTTACGCTGGTGCTATGAGGAGGTCAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: SHNAYFDAQTVN*PLRWCYEEVKL Trigger: AAGCTTGACCTCCTCATAGCACCAGCGTAAAGGGCAGTTAACTGTTTGGGCATCAAAATAGGCATTGTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CCA 72 bp | TATTTTGATGCCCAAACAGTTAACTGCCCTTTACGCTaGTGCTATGAGGAGGTCAAGCTTCTTGAAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: YFDAQTVNCPLR*CYEEVKLLEAP Trigger: TGGAGCTTCAAGAAGCTTGACCTCCTCATAGCACCAGCGTAAAGGGCAGTTAACTGTTTGGGCATCAAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS CAA 72 bp | GTCTGGGGATACACAACAACTCACACAATGCCTATTTaGATGCCCAAACAGTTAACTGCCCTTTACGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: VWGYTTTHTMPI*MPKQLTALYAG Trigger: ACCAGCGTAAAGGGCAGTTAACTGTTTGGGCATCAAAATAGGCATTGTGTGAGTTGTTGTGTATCCCCAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427173.1 ENST00000670282.1 |
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| CDS TCA 72 bp | TATAGCTGGCTTACATTAAGCCCTTTTACCGGTGAGTaGGCAGTCATGTGGACCAAATCTTTCGAGGAATCA | + |
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Preference number: 6 (lower is better) Translates to: YSWLTLSPFTGE*AVMWTKSFEES Trigger: TGATTCCTCGAAAGATTTGGTCCACATGACTGCTCACTCACCGGTAAAAGGGCTTAATGTAAGCCAGCTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000427173.1 ENST00000654430.1 ENST00000670282.1 |
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