RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01738 (Homo sapiens)

Ensembl gene IDs: ENSG00000227947

Ensembl transcript IDs: ENST00000454285.2

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGGAACATTCTGGACTCTCCATCAACCCTGGGATGCAGAAGGGCCTaGGGCAACCCCATAGGCACGTCACACTCCTCCATCCCTGGACTA +
Preference number: 5 (lower is better)
Translates to: GNILDSPSTLGCRRA*GNPIGTSHSSIPGL
Trigger: TAGTCCAGGGATGGAGGAGTGTGACGTGCCTATGGGGTTGCCCCAGGCCCTTCTGCATCCCAGGGTTGATGGAGAGTCCAGAATGTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 90 bp GGGGACAGGAGGGAGGGTGTTGCAGCAGGCTGGGTCTTCCCACTTTaGAAGGTGCTCAGACGAGAAAGGGCAACAGCACGTAATGGGAAA +
Preference number: 5 (lower is better)
Translates to: GDRREGVAAGWVFPL*KVLRRERATARNGK
Trigger: TTTCCCATTACGTGCTGTTGCCCTTTCTCGTCTGAGCACCTTTCAAAGTGGGAAGACCCAGCCTGCTGCAACACCCTCCCTCCTGTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS GCA 90 bp GGAGGGAGGGTGTTGCAGCAGGCTGGGTCTTCCCACTTTGAAAGGTaGTCAGACGAGAAAGGGCAACAGCACGTAATGGGAAATCGTGCC +
Preference number: 5 (lower is better)
Translates to: GGRVLQQAGSSHFER*SDEKGQQHVMGNRA
Trigger: GGCACGATTTCCCATTACGTGCTGTTGCCCTTTCTCGTCTGAGCACCTTTCAAAGTGGGAAGACCCAGCCTGCTGCAACACCCTCCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 90 bp ATATCCAGCTCTTCTGAAACCTCCCGACCCCATCCAGAGCTGCCCTaGGAACATTCTGGACTCTCCATCAACCCTGGGATGCAGAAGGGC +
Preference number: 5 (lower is better)
Translates to: ISSSSETSRPHPELP*EHSGLSINPGMQKG
Trigger: GCCCTTCTGCATCCCAGGGTTGATGGAGAGTCCAGAATGTTCCCAGGGCAGCTCTGGATGGGGTCGGGAGGTTTCAGAAGAGCTGGATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 90 bp GCAGCATGTGGCCTGGAAATGGAGCTGCAAGGCCCGGAAAGGTTTTaGAATAACATTTCAGGTTGGAGCCCTCCCTGCCCCCACCTGGAA +
Preference number: 5 (lower is better)
Translates to: AACGLEMELQGPERF*NNISGWSPPCPHLE
Trigger: TTCCAGGTGGGGGCAGGGAGGGCTCCAACCTGAAATGTTATTTCAAAACCTTTCCGGGCCTTGCAGCTCCATTTCCAGGCCACATGCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 90 bp CACCAGTTTCATCTTCTCTCTGTGGAGGGGCAAGGAGGAGCGAGCTaGGTTTGCTGCTCTTGGCAAGCCCATCTATCAGGAGTGTGGCCA +
Preference number: 5 (lower is better)
Translates to: HQFHLLSVEGQGGAS*VCCSWQAHLSGVWP
Trigger: TGGCCACACTCCTGATAGATGGGCTTGCCAAGAGCAGCAAACTCAGCTCGCTCCTCCTTGCCCCTCCACAGAGAGAAGATGAAACTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS GCA 90 bp GACGAGAAAGGGCAACAGCACGTAATGGGAAATCGTGCCGTGCTTTaGAGCATGTGGCCTGGAAATGGAGCTGCAAGGCCCGGAAAGGTT +
Preference number: 5 (lower is better)
Translates to: DEKGQQHVMGNRAVL*SMWPGNGAARPGKV
Trigger: AACCTTTCCGGGCCTTGCAGCTCCATTTCCAGGCCACATGCTGCAAAGCACGGCACGATTTCCCATTACGTGCTGTTGCCCTTTCTCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS GCA 90 bp AAGGTGCTCAGACGAGAAAGGGCAACAGCACGTAATGGGAAATCGTaGCGTGCTTTGCAGCATGTGGCCTGGAAATGGAGCTGCAAGGCC +
Preference number: 5 (lower is better)
Translates to: KVLRRERATARNGKS*RALQHVAWKWSCKA
Trigger: GGCCTTGCAGCTCCATTTCCAGGCCACATGCTGCAAAGCACGGCACGATTTCCCATTACGTGCTGTTGCCCTTTCTCGTCTGAGCACCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS GCA 90 bp GCGCATCATCCATCTCTGTCCTCACCCCGTCAGATGACAAGACTTTaGTGGCCTGCTCCTTCTTGGAATGTGCCTTGGCTGGCAGAAAGC +
Preference number: 5 (lower is better)
Translates to: AHHPSLSSPRQMTRL*WPAPSWNVPWLAES
Trigger: GCTTTCTGCCAGCCAAGGCACATTCCAAGAAGGAGCAGGCCAGCAAAGTCTTGTCATCTGACGGGGTGAGGACAGAGATGGATGATGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 90 bp TCTGGCAAAGAGCGCATCATCCATCTCTGTCCTCACCCCGTCAGATaGCAAGACTTTGCTGGCCTGCTCCTTCTTGGAATGTGCCTTGGC +
Preference number: 5 (lower is better)
Translates to: SGKERIIHLCPHPVR*QDFAGLLLLGMCLG
Trigger: GCCAAGGCACATTCCAAGAAGGAGCAGGCCAGCAAAGTCTTGTCATCTGACGGGGTGAGGACAGAGATGGATGATGCGCTCTTTGCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 90 bp CATCATCCATCTCTGTCCTCACCCCGTCAGATGACAAGACTTTGCTaGCCTGCTCCTTCTTGGAATGTGCCTTGGCTGGCAGAAAGCAGG +
Preference number: 5 (lower is better)
Translates to: HHPSLSSPRQMTRLC*PAPSWNVPWLAESR
Trigger: CCTGCTTTCTGCCAGCCAAGGCACATTCCAAGAAGGAGCAGGCCAGCAAAGTCTTGTCATCTGACGGGGTGAGGACAGAGATGGATGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 90 bp TCGGGTGCCGGGCAAGGCTATTTATTTAAGCCTCACATCAGGCAGTaGGACTTAATTTATGGGGACAGGAGGGAGGGTGTTGCAGCAGGC +
Preference number: 5 (lower is better)
Translates to: SGAGQGYLFKPHIRQ*DLIYGDRREGVAAG
Trigger: GCCTGCTGCAACACCCTCCCTCCTGTCCCCATAAATTAAGTCTCACTGCCTGATGTGAGGCTTAAATAAATAGCCTTGCCCGGCACCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS GCA 90 bp CATCAGGCAGTGAGACTTAATTTATGGGGACAGGAGGGAGGGTGTTaGAGCAGGCTGGGTCTTCCCACTTTGAAAGGTGCTCAGACGAGA +
Preference number: 5 (lower is better)
Translates to: HQAVRLNLWGQEGGC*SRLGLPTLKGAQTR
Trigger: TCTCGTCTGAGCACCTTTCAAAGTGGGAAGACCCAGCCTGCTGCAACACCCTCCCTCCTGTCCCCATAAATTAAGTCTCACTGCCTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 90 bp TCTTTCCCAGCCTCGTTCAGATGGGGATCTTTGCTGTTAATAAAGTaGCAGCTGGCTATCTGGGAGTGTCTGAACGTGGCCTTCTCTGGC +
Preference number: 5 (lower is better)
Translates to: SFPASFRWGSLLLIK*QLAIWECLNVAFSG
Trigger: GCCAGAGAAGGCCACGTTCAGACACTCCCAGATAGCCAGCTGCCACTTTATTAACAGCAAAGATCCCCATCTGAACGAGGCTGGGAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 90 bp CAGATGACAAGACTTTGCTGGCCTGCTCCTTCTTGGAATGTGCCTTaGCTGGCAGAAAGCAGGCAGGAAGCATTTGCAAAACACCAGTTT +
Preference number: 5 (lower is better)
Translates to: QMTRLCWPAPSWNVP*LAESRQEAFAKHQF
Trigger: AAACTGGTGTTTTGCAAATGCTTCCTGCCTGCTTTCTGCCAGCCAAGGCACATTCCAAGAAGGAGCAGGCCAGCAAAGTCTTGTCATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 90 bp TTCAGATGGGGATCTTTGCTGTTAATAAAGTGGCAGCTGGCTATCTaGGAGTGTCTGAACGTGGCCTTCTCTGGCAAAGAGCGCATCATC +
Preference number: 5 (lower is better)
Translates to: FRWGSLLLIKWQLAI*ECLNVAFSGKERII
Trigger: GATGATGCGCTCTTTGCCAGAGAAGGCCACGTTCAGACACTCCCAGATAGCCAGCTGCCACTTTATTAACAGCAAAGATCCCCATCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 90 bp CGTAATGGGAAATCGTGCCGTGCTTTGCAGCATGTGGCCTGGAAATaGAGCTGCAAGGCCCGGAAAGGTTTTGAAATAACATTTCAGGTT +
Preference number: 5 (lower is better)
Translates to: RNGKSCRALQHVAWK*SCKARKGFEITFQV
Trigger: AACCTGAAATGTTATTTCAAAACCTTTCCGGGCCTTGCAGCTCCATTTCCAGGCCACATGCTGCAAAGCACGGCACGATTTCCCATTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 90 bp ACAGCACGTAATGGGAAATCGTGCCGTGCTTTGCAGCATGTGGCCTaGAAATGGAGCTGCAAGGCCCGGAAAGGTTTTGAAATAACATTT +
Preference number: 5 (lower is better)
Translates to: TARNGKSCRALQHVA*KWSCKARKGFEITF
Trigger: AAATGTTATTTCAAAACCTTTCCGGGCCTTGCAGCTCCATTTCCAGGCCACATGCTGCAAAGCACGGCACGATTTCCCATTACGTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 90 bp CCTGCTAATAGAAGGGTCTTTGCAAAAGACCGAAATCGTCCTTGTTaGAATTACATCGTCTGTGATTCTCTCCCCTTCCAGATGCACGGG +
Preference number: 5 (lower is better)
Translates to: PANRRVFAKDRNRPC*NYIVCDSLPFQMHG
Trigger: CCCGTGCATCTGGAAGGGGAGAGAATCACAGACGATGTAATTTCAACAAGGACGATTTCGGTCTTTTGCAAAGACCCTTCTATTAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 90 bp TCTCTCTGTGGAGGGGCAAGGAGGAGCGAGCTGAGTTTGCTGCTCTaGGCAAGCCCATCTATCAGGAGTGTGGCCATCGGGTGCCGGGCA +
Preference number: 6 (lower is better)
Translates to: SLCGGARRSELSLLL*ASPSIRSVAIGCRA
Trigger: TGCCCGGCACCCGATGGCCACACTCCTGATAGATGGGCTTGCCAAGAGCAGCAAACTCAGCTCGCTCCTCCTTGCCCCTCCACAGAGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 72 bp CTGGACTCTCCATCAACCCTGGGATGCAGAAGGGCCTaGGGCAACCCCATAGGCACGTCACACTCCTCCATC +
Preference number: 6 (lower is better)
Translates to: LDSPSTLGCRRA*GNPIGTSHSSI
Trigger: GATGGAGGAGTGTGACGTGCCTATGGGGTTGCCCCAGGCCCTTCTGCATCCCAGGGTTGATGGAGAGTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 72 bp CTCCCGACCCCATCCAGAGCTGCCCTGGGAACATTCTaGACTCTCCATCAACCCTGGGATGCAGAAGGGCCT +
Preference number: 6 (lower is better)
Translates to: LPTPSRAALGTF*TLHQPWDAEGP
Trigger: AGGCCCTTCTGCATCCCAGGGTTGATGGAGAGTCCAGAATGTTCCCAGGGCAGCTCTGGATGGGGTCGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 72 bp GGAGGGGCAAGGAGGAGCGAGCTGAGTTTGCTGCTCTaGGCAAGCCCATCTATCAGGAGTGTGGCCATCGGG +
Preference number: 6 (lower is better)
Translates to: GGARRSELSLLL*ASPSIRSVAIG
Trigger: CCCGATGGCCACACTCCTGATAGATGGGCTTGCCAAGAGCAGCAAACTCAGCTCGCTCCTCCTTGCCCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 90 bp GTTTCATCTTCTCTCTGTGGAGGGGCAAGGAGGAGCGAGCTGAGTTaGCTGCTCTTGGCAAGCCCATCTATCAGGAGTGTGGCCATCGGG +
Preference number: 6 (lower is better)
Translates to: VSSSLCGGARRSELS*LLLASPSIRSVAIG
Trigger: CCCGATGGCCACACTCCTGATAGATGGGCTTGCCAAGAGCAGCAAACTCAGCTCGCTCCTCCTTGCCCCTCCACAGAGAGAAGATGAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 72 bp AGGGAGGGTGTTGCAGCAGGCTGGGTCTTCCCACTTTaGAAGGTGCTCAGACGAGAAAGGGCAACAGCACGT +
Preference number: 6 (lower is better)
Translates to: REGVAAGWVFPL*KVLRRERATAR
Trigger: ACGTGCTGTTGCCCTTTCTCGTCTGAGCACCTTTCAAAGTGGGAAGACCCAGCCTGCTGCAACACCCTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 72 bp TCTTCTGAAACCTCCCGACCCCATCCAGAGCTGCCCTaGGAACATTCTGGACTCTCCATCAACCCTGGGATG +
Preference number: 6 (lower is better)
Translates to: SSETSRPHPELP*EHSGLSINPGM
Trigger: CATCCCAGGGTTGATGGAGAGTCCAGAATGTTCCCAGGGCAGCTCTGGATGGGGTCGGGAGGTTTCAGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 72 bp AGGGCAACAGCACGTAATGGGAAATCGTGCCGTGCTTaGCAGCATGTGGCCTGGAAATGGAGCTGCAAGGCC +
Preference number: 6 (lower is better)
Translates to: RATARNGKSCRA*QHVAWKWSCKA
Trigger: GGCCTTGCAGCTCCATTTCCAGGCCACATGCTGCAAAGCACGGCACGATTTCCCATTACGTGCTGTTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 90 bp AGACGAGAAAGGGCAACAGCACGTAATGGGAAATCGTGCCGTGCTTaGCAGCATGTGGCCTGGAAATGGAGCTGCAAGGCCCGGAAAGGT +
Preference number: 6 (lower is better)
Translates to: RRERATARNGKSCRA*QHVAWKWSCKARKG
Trigger: ACCTTTCCGGGCCTTGCAGCTCCATTTCCAGGCCACATGCTGCAAAGCACGGCACGATTTCCCATTACGTGCTGTTGCCCTTTCTCGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 72 bp CATCTTCTCTCTGTGGAGGGGCAAGGAGGAGCGAGCTaGGTTTGCTGCTCTTGGCAAGCCCATCTATCAGGA +
Preference number: 6 (lower is better)
Translates to: HLLSVEGQGGAS*VCCSWQAHLSG
Trigger: TCCTGATAGATGGGCTTGCCAAGAGCAGCAAACTCAGCTCGCTCCTCCTTGCCCCTCCACAGAGAGAAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS GCA 72 bp CCATCTCTGTCCTCACCCCGTCAGATGACAAGACTTTaGTGGCCTGCTCCTTCTTGGAATGTGCCTTGGCTG +
Preference number: 6 (lower is better)
Translates to: PSLSSPRQMTRL*WPAPSWNVPWL
Trigger: CAGCCAAGGCACATTCCAAGAAGGAGCAGGCCAGCAAAGTCTTGTCATCTGACGGGGTGAGGACAGAGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 72 bp TCTCTGTCCTCACCCCGTCAGATGACAAGACTTTGCTaGCCTGCTCCTTCTTGGAATGTGCCTTGGCTGGCA +
Preference number: 6 (lower is better)
Translates to: SLSSPRQMTRLC*PAPSWNVPWLA
Trigger: TGCCAGCCAAGGCACATTCCAAGAAGGAGCAGGCCAGCAAAGTCTTGTCATCTGACGGGGTGAGGACAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 72 bp TCTAACTGTAGCACCCACTCCCCCACCCAGGTCCTCTaGTTTGCAGTTAACAGGTGCCAGGGTGTGTTCTGC +
Preference number: 6 (lower is better)
Translates to: SNCSTHSPTQVL*FAVNRCQGVFC
Trigger: GCAGAACACACCCTGGCACCTGTTAACTGCAAACAAGAGGACCTGGGTGGGGGAGTGGGTGCTACAGTTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 90 bp AGCGCATCATCCATCTCTGTCCTCACCCCGTCAGATGACAAGACTTaGCTGGCCTGCTCCTTCTTGGAATGTGCCTTGGCTGGCAGAAAG +
Preference number: 6 (lower is better)
Translates to: SASSISVLTPSDDKT*LACSFLECALAGRK
Trigger: CTTTCTGCCAGCCAAGGCACATTCCAAGAAGGAGCAGGCCAGCAAAGTCTTGTCATCTGACGGGGTGAGGACAGAGATGGATGATGCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 72 bp GAGCGCATCATCCATCTCTGTCCTCACCCCGTCAGATaGCAAGACTTTGCTGGCCTGCTCCTTCTTGGAATG +
Preference number: 6 (lower is better)
Translates to: ERIIHLCPHPVR*QDFAGLLLLGM
Trigger: CATTCCAAGAAGGAGCAGGCCAGCAAAGTCTTGTCATCTGACGGGGTGAGGACAGAGATGGATGATGCGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS GCA 72 bp AGACGAGAAAGGGCAACAGCACGTAATGGGAAATCGTaGCGTGCTTTGCAGCATGTGGCCTGGAAATGGAGC +
Preference number: 6 (lower is better)
Translates to: RRERATARNGKS*RALQHVAWKWS
Trigger: GCTCCATTTCCAGGCCACATGCTGCAAAGCACGGCACGATTTCCCATTACGTGCTGTTGCCCTTTCTCGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS GCA 72 bp GTGTTGCAGCAGGCTGGGTCTTCCCACTTTGAAAGGTaGTCAGACGAGAAAGGGCAACAGCACGTAATGGGA +
Preference number: 6 (lower is better)
Translates to: VLQQAGSSHFER*SDEKGQQHVMG
Trigger: TCCCATTACGTGCTGTTGCCCTTTCTCGTCTGAGCACCTTTCAAAGTGGGAAGACCCAGCCTGCTGCAACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 90 bp CCACTGATTTCTAACTGTAGCACCCACTCCCCCACCCAGGTCCTCTaGTTTGCAGTTAACAGGTGCCAGGGTGTGTTCTGCTTTCTCAGG +
Preference number: 6 (lower is better)
Translates to: PLISNCSTHSPTQVL*FAVNRCQGVFCFLR
Trigger: CCTGAGAAAGCAGAACACACCCTGGCACCTGTTAACTGCAAACAAGAGGACCTGGGTGGGGGAGTGGGTGCTACAGTTAGAAATCAGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 72 bp AATGGGAAATCGTGCCGTGCTTTGCAGCATGTGGCCTaGAAATGGAGCTGCAAGGCCCGGAAAGGTTTTGAA +
Preference number: 6 (lower is better)
Translates to: NGKSCRALQHVA*KWSCKARKGFE
Trigger: TTCAAAACCTTTCCGGGCCTTGCAGCTCCATTTCCAGGCCACATGCTGCAAAGCACGGCACGATTTCCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 72 bp GTTTGCTGCTCTTGGCAAGCCCATCTATCAGGAGTGTaGCCATCGGGTGCCGGGCAAGGCTATTTATTTAAG +
Preference number: 6 (lower is better)
Translates to: VCCSWQAHLSGV*PSGAGQGYLFK
Trigger: CTTAAATAAATAGCCTTGCCCGGCACCCGATGGCCACACTCCTGATAGATGGGCTTGCCAAGAGCAGCAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS GCA 72 bp GAAATTACATCGTCTGTGATTCTCTCCCCTTCCAGATaGACGGGAGTACATCCAGAGGCTGCTGTCAGCTCT +
Preference number: 6 (lower is better)
Translates to: EITSSVILSPSR*TGVHPEAAVSS
Trigger: AGAGCTGACAGCAGCCTCTGGATGTACTCCCGTGCATCTGGAAGGGGAGAGAATCACAGACGATGTAATTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 72 bp CTTGACTTCCAAGTTCAGAAAAGGCTGCGTGAAGTCTaGGAGTTATGGAGCCTGCTTGGGGGACCAAGGAAG +
Preference number: 6 (lower is better)
Translates to: LDFQVQKRLREV*ELWSLLGGPRK
Trigger: CTTCCTTGGTCCCCCAAGCAGGCTCCATAACTCCAAGACTTCACGCAGCCTTTTCTGAACTTGGAAGTCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 90 bp TCAGATGACAAGACTTTGCTGGCCTGCTCCTTCTTGGAATGTGCCTaGGCTGGCAGAAAGCAGGCAGGAAGCATTTGCAAAACACCAGTT +
Preference number: 6 (lower is better)
Translates to: SDDKTLLACSFLECA*AGRKQAGSICKTPV
Trigger: AACTGGTGTTTTGCAAATGCTTCCTGCCTGCTTTCTGCCAGCCAAGGCACATTCCAAGAAGGAGCAGGCCAGCAAAGTCTTGTCATCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 72 bp TTGACTTCCAAGTTCAGAAAAGGCTGCGTGAAGTCTTaGAGTTATGGAGCCTGCTTGGGGGACCAAGGAAGA +
Preference number: 6 (lower is better)
Translates to: LTSKFRKGCVKS*SYGACLGDQGR
Trigger: TCTTCCTTGGTCCCCCAAGCAGGCTCCATAACTCCAAGACTTCACGCAGCCTTTTCTGAACTTGGAAGTCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 72 bp AAATCGTGCCGTGCTTTGCAGCATGTGGCCTGGAAATaGAGCTGCAAGGCCCGGAAAGGTTTTGAAATAACA +
Preference number: 6 (lower is better)
Translates to: KSCRALQHVAWK*SCKARKGFEIT
Trigger: TGTTATTTCAAAACCTTTCCGGGCCTTGCAGCTCCATTTCCAGGCCACATGCTGCAAAGCACGGCACGATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CCA 72 bp GGATCTTTGCTGTTAATAAAGTGGCAGCTGGCTATCTaGGAGTGTCTGAACGTGGCCTTCTCTGGCAAAGAG +
Preference number: 6 (lower is better)
Translates to: GSLLLIKWQLAI*ECLNVAFSGKE
Trigger: CTCTTTGCCAGAGAAGGCCACGTTCAGACACTCCCAGATAGCCAGCTGCCACTTTATTAACAGCAAAGATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 72 bp GGGCAAGGCTATTTATTTAAGCCTCACATCAGGCAGTaGGACTTAATTTATGGGGACAGGAGGGAGGGTGTT +
Preference number: 6 (lower is better)
Translates to: GQGYLFKPHIRQ*DLIYGDRREGV
Trigger: AACACCCTCCCTCCTGTCCCCATAAATTAAGTCTCACTGCCTGATGTGAGGCTTAAATAAATAGCCTTGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS TCA 72 bp AGAAGGGTCTTTGCAAAAGACCGAAATCGTCCTTGTTaGAATTACATCGTCTGTGATTCTCTCCCCTTCCAG +
Preference number: 6 (lower is better)
Translates to: RRVFAKDRNRPC*NYIVCDSLPFQ
Trigger: CTGGAAGGGGAGAGAATCACAGACGATGTAATTTCAACAAGGACGATTTCGGTCTTTTGCAAAGACCCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454285.2
CDS CAA 72 bp GGAGCATCCAAGCTGCTCCTGCTAATAGAAGGGTCTTaGCAAAAGACCGAAATCGTCCTTGTTGAAATTACA +
Preference number: 6 (lower is better)
Translates to: GASKLLLLIEGS*QKTEIVLVEIT
Trigger: TGTAATTTCAACAAGGACGATTTCGGTCTTTTGCAAAGACCCTTCTATTAGCAGGAGCAGCTTGGATGCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454285.2