Pregenerated sensors for LINC01729 (Homo sapiens)

Ensembl gene IDs: ENSG00000225640

Ensembl transcript IDs: ENST00000450640.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AAGGCCTGCGGGAACCCAGGGACCGAGAGAAGGCAGGTGTTGGGTTaGGCAGGATCCAGGTTAGCCGGGGAGGGACGTGGGAGTCCTTGT	+
Preference number: 5 (lower is better) Translates to: KACGNPGTERRQVLG*AGSRLAGEGRGSPC Trigger: ACAAGGACTCCCACGTCCCTCCCCGGCTAACCTGGATCCTGCTCAACCCAACACCTGCCTTCTCTCGGTCCCTGGGTTCCCGCAGGCCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450640.1
CDS TCA 72 bp	GGGAACCCAGGGACCGAGAGAAGGCAGGTGTTGGGTTaGGCAGGATCCAGGTTAGCCGGGGAGGGACGTGGG	+
Preference number: 6 (lower is better) Translates to: GNPGTERRQVLG*AGSRLAGEGRG Trigger: CCCACGTCCCTCCCCGGCTAACCTGGATCCTGCTCAACCCAACACCTGCCTTCTCTCGGTCCCTGGGTTCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450640.1
CDS CAA 90 bp	CAAGGCCTGCGGGAACCCAGGGACCGAGAGAAGGCAGGTGTTGGGTaGAGCAGGATCCAGGTTAGCCGGGGAGGGACGTGGGAGTCCTTG	+
Preference number: 6 (lower is better) Translates to: QGLREPRDREKAGVG*SRIQVSRGGTWESL Trigger: CAAGGACTCCCACGTCCCTCCCCGGCTAACCTGGATCCTGCTCAACCCAACACCTGCCTTCTCTCGGTCCCTGGGTTCCCGCAGGCCTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450640.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu