Pregenerated sensors for LINC01720 (Homo sapiens)
Ensembl gene IDs: ENSG00000231175Ensembl transcript IDs: ENST00000413356.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCCTCCTCTTCCTTCACTCTTCTTCCTGTATCTACTAGCTCTGAATaGGAGAAGGCTTCCAGGCAGGGCCACACAAGGATTGCAACCTTT | + |
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Preference number: 5 (lower is better) Translates to: SSSSFTLLPVSTSSE*EKASRQGHTRIATF Trigger: AAAGGTTGCAATCCTTGTGTGGCCCTGCCTGGAAGCCTTCTCTCATTCAGAGCTAGTAGATACAGGAAGAAGAGTGAAGGAAGAGGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS GCA 90 bp | GTTTGTATTTCTCAAATGATTAACAATGTTGGGTATATTTCCACATaGTTATGCATCACACACACATACACACACACACACACACACACA | + |
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Preference number: 5 (lower is better) Translates to: VCISQMINNVGYIST*LCITHTYTHTHTHT Trigger: TGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGATGCATAAGCATGTGGAAATATACCCAACATTGTTAATCATTTGAGAAATACAAAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS TCA 72 bp | TTCCTGGGCTCAGTTGATTTTTCCACCTCAATCTCCTaGGTAGCTGGAACTACAAGCATGCACCACCATGCC | + |
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Preference number: 6 (lower is better) Translates to: FLGSVDFSTSIS*VAGTTSMHHHA Trigger: GGCATGGTGGTGCATGCTTGTAGTTCCAGCTACTCAGGAGATTGAGGTGGAAAAATCAACTGAGCCCAGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS TCA 72 bp | TCCTTCACTCTTCTTCCTGTATCTACTAGCTCTGAATaGGAGAAGGCTTCCAGGCAGGGCCACACAAGGATT | + |
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Preference number: 6 (lower is better) Translates to: SFTLLPVSTSSE*EKASRQGHTRI Trigger: AATCCTTGTGTGGCCCTGCCTGGAAGCCTTCTCTCATTCAGAGCTAGTAGATACAGGAAGAAGAGTGAAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS GCA 72 bp | ATGAGAGAAGGCTTCCAGGCAGGGCCACACAAGGATTaGAACCTTTGGCTATATCTATGTGGAATTCATTGC | + |
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Preference number: 6 (lower is better) Translates to: MREGFQAGPHKD*NLWLYLCGIHC Trigger: GCAATGAATTCCACATAGATATAGCCAAAGGTTGCAATCCTTGTGTGGCCCTGCCTGGAAGCCTTCTCTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS CAA 72 bp | AATGAGAGAAGGCTTCCAGGCAGGGCCACACAAGGATaGCAACCTTTGGCTATATCTATGTGGAATTCATTG | + |
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Preference number: 6 (lower is better) Translates to: NERRLPGRATQG*QPLAISMWNSL Trigger: CAATGAATTCCACATAGATATAGCCAAAGGTTGCAATCCTTGTGTGGCCCTGCCTGGAAGCCTTCTCTCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS CAA 90 bp | CTAGCTCTGAATGAGAGAAGGCTTCCAGGCAGGGCCACACAAGGATaGCAACCTTTGGCTATATCTATGTGGAATTCATTGCTTAATTTG | + |
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Preference number: 6 (lower is better) Translates to: LALNERRLPGRATQG*QPLAISMWNSLLNL Trigger: CAAATTAAGCAATGAATTCCACATAGATATAGCCAAAGGTTGCAATCCTTGTGTGGCCCTGCCTGGAAGCCTTCTCTCATTCAGAGCTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS CAA 72 bp | AGGCTTCCAGGCAGGGCCACACAAGGATTGCAACCTTaGGCTATATCTATGTGGAATTCATTGCTTAATTTG | + |
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Preference number: 6 (lower is better) Translates to: RLPGRATQGLQP*AISMWNSLLNL Trigger: CAAATTAAGCAATGAATTCCACATAGATATAGCCAAAGGTTGCAATCCTTGTGTGGCCCTGCCTGGAAGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS TCA 72 bp | TTCTGCGGCATTGTCGAGGAGAAGGCCTTGAAATGCTaGGTACTTCTTGATAAATGCAGATTAAGTGATGTC | + |
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Preference number: 6 (lower is better) Translates to: FCGIVEEKALKC*VLLDKCRLSDV Trigger: GACATCACTTAATCTGCATTTATCAAGAAGTACTCAGCATTTCAAGGCCTTCTCCTCGACAATGCCGCAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS CAA 90 bp | ACACACACATACACACACACACACACACACACACACACACCATATTaGGTGAAATGCTGCTCACATTTTTGCACATTTCTTTTTAATCAG | + |
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Preference number: 6 (lower is better) Translates to: THTYTHTHTHTHTPY*VKCCSHFCTFLFNQ Trigger: CTGATTAAAAAGAAATGTGCAAAAATGTGAGCAGCATTTCACCAAATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS TCA 72 bp | TTTATATTCCCACCAACAATGAATGAGAGGTCCAGTTaGTCCACACTTTTAACAACCCTGGGTATTAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: FIFPPTMNERSS*STLLTTLGISK Trigger: TTTGCTAATACCCAGGGTTGTTAAAAGTGTGGATCAACTGGACCTCTCATTCATTGTTGGTGGGAATATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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| CDS CCA 72 bp | GCCACACAAGGATTGCAACCTTTGGCTATATCTATGTaGAATTCATTGCTTAATTTGATGAGTAGTTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: ATQGLQPLAISM*NSLLNLMSSFC Trigger: GCAGAAACTACTCATCAAATTAAGCAATGAATTCCACATAGATATAGCCAAAGGTTGCAATCCTTGTGTGGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413356.1 |
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