Pregenerated sensors for LINC01718 (Homo sapiens)
Ensembl gene IDs: ENSG00000229606Ensembl transcript IDs: ENST00000441660.1, ENST00000664708.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGCTCCCGGTTCTCAGCTTGGGGGCCAATCAGGCAGCTCTTGTGTaGCTCTTAACACACGAGGCTGTGGAGTGGCGTCCAAAGAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: RLPVLSLGANQAALV*LLTHEAVEWRPKRR Trigger: GCGCCTCTTTGGACGCCACTCCACAGCCTCGTGTGTTAAGAGGCACACAAGAGCTGCCTGATTGGCCCCCAAGCTGAGAACCGGGAGCCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 90 bp | GTGTGTGTGATGCTGATGGGGCTACATCAGGTTGAGATTTCGCTATaGTTTCCTCCGGCTCCCGGTTCTCAGCTTGGGGGCCAATCAGGC | + |
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Preference number: 5 (lower is better) Translates to: VCVMLMGLHQVEISL*FPPAPGSQLGGQSG Trigger: GCCTGATTGGCCCCCAAGCTGAGAACCGGGAGCCGGAGGAAATCATAGCGAAATCTCAACCTGATGTAGCCCCATCAGCATCACACACAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 90 bp | AAATCCCAGGGCCGTTTGGGTGCTCTTCTGGAACTGGTAAGAAGCTaGGTCCATGTAAGGCCCCATGAGGCTCCCCAGCTGACAGATGAG | + |
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Preference number: 5 (lower is better) Translates to: KSQGRLGALLELVRS*VHVRPHEAPQLTDE Trigger: CTCATCTGTCAGCTGGGGAGCCTCATGGGGCCTTACATGGACTCAGCTTCTTACCAGTTCCAGAAGAGCACCCAAACGGCCCTGGGATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS CCA 90 bp | ATCTGGCCTGAGCACACTTGTAGAGTCTCTGGCCTCTTGGTCCAGTaGTCAAGGATACTCTCAAGGTCAGGTTCAATGCATCTGCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: IWPEHTCRVSGLLVQ*SRILSRSGSMHLPQ Trigger: CTGAGGCAGATGCATTGAACCTGACCTTGAGAGTATCCTTGACCACTGGACCAAGAGGCCAGAGACTCTACAAGTGTGCTCAGGCCAGAT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 90 bp | TTTTGCTCTGAGTGTGTGTGTGATGCTGATGGGGCTACATCAGGTTaGGATTTCGCTATGATTTCCTCCGGCTCCCGGTTCTCAGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: FCSECVCDADGATSG*DFAMISSGSRFSAW Trigger: CCAAGCTGAGAACCGGGAGCCGGAGGAAATCATAGCGAAATCTCAACCTGATGTAGCCCCATCAGCATCACACACACACTCAGAGCAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000441660.1 ENST00000664708.1 |
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| CDS TCA 90 bp | CTTGAATTCTATGTAGAGCTGAAAGAATCAGTCCCCAGCAACGGTTaGGTGGGCAGTAAGAGATGGCGGCCCACTCTCTGTGCTGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: LEFYVELKESVPSNG*VGSKRWRPTLCAVA Trigger: AGCAACAGCACAGAGAGTGGGCCGCCATCTCTTACTGCCCACTCAACCGTTGCTGGGGACTGATTCTTTCAGCTCTACATAGAATTCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441660.1 |
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| CDS GCA 90 bp | AACTTGCCTTATGCTTCAGAGTTGAAAATCCCAGGGCCGTTTGGGTaGTCTTCTGGAACTGGTAAGAAGCTGAGTCCATGTAAGGCCCCA | + |
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Preference number: 5 (lower is better) Translates to: NLPYASELKIPGPFG*SSGTGKKLSPCKAP Trigger: TGGGGCCTTACATGGACTCAGCTTCTTACCAGTTCCAGAAGAGCACCCAAACGGCCCTGGGATTTTCAACTCTGAAGCATAAGGCAAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS CCA 90 bp | CCCTTCCCCAGCCACATCTTACTGGTTCCAGCTCATTGGTTATCCTaGAAGCTGTTACATGTGCAAGCAGCTGTTCTTTCAAATACCACC | + |
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Preference number: 5 (lower is better) Translates to: PFPSHILLVPAHWLS*KLLHVQAAVLSNTT Trigger: GGTGGTATTTGAAAGAACAGCTGCTTGCACATGTAACAGCTTCCAGGATAACCAATGAGCTGGAACCAGTAAGATGTGGCTGGGGAAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 90 bp | CCTCAGATGGCCTTACAGCTAACACAAATGACCCGAAGCTCAGGTTaGGAGCATTTGAATCAGCTGGCTTCGTATGATGAGTGCATTAGA | + |
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Preference number: 5 (lower is better) Translates to: PQMALQLTQMTRSSG*EHLNQLASYDECIR Trigger: TCTAATGCACTCATCATACGAAGCCAGCTGATTCAAATGCTCTCAACCTGAGCTTCGGGTCATTTGTGTTAGCTGTAAGGCCATCTGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS CCA 90 bp | GTTGTCTCTACCTTGCTTGCTGGTGTTTCTCTGACAGATAAAAGCTaGTGTGAATTGGGTGCTTCATTAACTTGCCTTATGCTTCAGAGT | + |
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Preference number: 5 (lower is better) Translates to: VVSTLLAGVSLTDKS*CELGASLTCLMLQS Trigger: ACTCTGAAGCATAAGGCAAGTTAATGAAGCACCCAATTCACACCAGCTTTTATCTGTCAGAGAAACACCAGCAAGCAAGGTAGAGACAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 72 bp | GGCCGTTTGGGTGCTCTTCTGGAACTGGTAAGAAGCTaGGTCCATGTAAGGCCCCATGAGGCTCCCCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: GRLGALLELVRS*VHVRPHEAPQL Trigger: CAGCTGGGGAGCCTCATGGGGCCTTACATGGACTCAGCTTCTTACCAGTTCCAGAAGAGCACCCAAACGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS GCA 72 bp | GTTCTCAGCTTGGGGGCCAATCAGGCAGCTCTTGTGTaGCTCTTAACACACGAGGCTGTGGAGTGGCGTCCA | + |
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Preference number: 6 (lower is better) Translates to: VLSLGANQAALV*LLTHEAVEWRP Trigger: TGGACGCCACTCCACAGCCTCGTGTGTTAAGAGGCACACAAGAGCTGCCTGATTGGCCCCCAAGCTGAGAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 72 bp | ATGCTGATGGGGCTACATCAGGTTGAGATTTCGCTATaGTTTCCTCCGGCTCCCGGTTCTCAGCTTGGGGGC | + |
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Preference number: 6 (lower is better) Translates to: MLMGLHQVEISL*FPPAPGSQLGG Trigger: GCCCCCAAGCTGAGAACCGGGAGCCGGAGGAAATCATAGCGAAATCTCAACCTGATGTAGCCCCATCAGCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000441660.1 ENST00000664708.1 |
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| CDS CAA 72 bp | TTTCGCTATGATTTCCTCCGGCTCCCGGTTCTCAGCTaGGGGGCCAATCAGGCAGCTCTTGTGTGCCTCTTA | + |
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Preference number: 6 (lower is better) Translates to: FRYDFLRLPVLS*GANQAALVCLL Trigger: TAAGAGGCACACAAGAGCTGCCTGATTGGCCCCCAAGCTGAGAACCGGGAGCCGGAGGAAATCATAGCGAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS CAA 90 bp | AGGTTGAGATTTCGCTATGATTTCCTCCGGCTCCCGGTTCTCAGCTaGGGGGCCAATCAGGCAGCTCTTGTGTGCCTCTTAACACACGAG | + |
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Preference number: 6 (lower is better) Translates to: RLRFRYDFLRLPVLS*GANQAALVCLLTHE Trigger: CTCGTGTGTTAAGAGGCACACAAGAGCTGCCTGATTGGCCCCCAAGCTGAGAACCGGGAGCCGGAGGAAATCATAGCGAAATCTCAACCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 72 bp | TATGTAGAGCTGAAAGAATCAGTCCCCAGCAACGGTTaGGTGGGCAGTAAGAGATGGCGGCCCACTCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: YVELKESVPSNG*VGSKRWRPTLC Trigger: ACAGAGAGTGGGCCGCCATCTCTTACTGCCCACTCAACCGTTGCTGGGGACTGATTCTTTCAGCTCTACATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441660.1 |
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| CDS CCA 72 bp | TCTGGCCTGAGCACACTTGTAGAGTCTCTGGCCTCTTaGTCCAGTGGTCAAGGATACTCTCAAGGTCAGGTT | + |
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Preference number: 6 (lower is better) Translates to: SGLSTLVESLAS*SSGQGYSQGQV Trigger: AACCTGACCTTGAGAGTATCCTTGACCACTGGACCAAGAGGCCAGAGACTCTACAAGTGTGCTCAGGCCAGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS CAA 72 bp | ATCTGGCCTGAGCACACTTGTAGAGTCTCTGGCCTCTaGGTCCAGTGGTCAAGGATACTCTCAAGGTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: IWPEHTCRVSGL*VQWSRILSRSG Trigger: ACCTGACCTTGAGAGTATCCTTGACCACTGGACCAAGAGGCCAGAGACTCTACAAGTGTGCTCAGGCCAGAT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS CAA 90 bp | ACGGTTGAGTGGGCAGTAAGAGATGGCGGCCCACTCTCTGTGCTGTaGCTGTCCCAAGGAGAAGAGAGGAAAGAAGCTGTTCTTTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: TVEWAVRDGGPLSVL*LSQGEERKEAVLSN Trigger: ATTTGAAAGAACAGCTTCTTTCCTCTCTTCTCCTTGGGACAGCAACAGCACAGAGAGTGGGCCGCCATCTCTTACTGCCCACTCAACCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441660.1 |
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| CDS CAA 90 bp | GAGTTAGCCATCTGGCCTGAGCACACTTGTAGAGTCTCTGGCCTCTaGGTCCAGTGGTCAAGGATACTCTCAAGGTCAGGTTCAATGCAT | + |
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Preference number: 6 (lower is better) Translates to: ELAIWPEHTCRVSGL*VQWSRILSRSGSMH Trigger: ATGCATTGAACCTGACCTTGAGAGTATCCTTGACCACTGGACCAAGAGGCCAGAGACTCTACAAGTGTGCTCAGGCCAGATGGCTAACTC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS GCA 72 bp | TATGCTTCAGAGTTGAAAATCCCAGGGCCGTTTGGGTaGTCTTCTGGAACTGGTAAGAAGCTGAGTCCATGT | + |
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Preference number: 6 (lower is better) Translates to: YASELKIPGPFG*SSGTGKKLSPC Trigger: ACATGGACTCAGCTTCTTACCAGTTCCAGAAGAGCACCCAAACGGCCCTGGGATTTTCAACTCTGAAGCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 72 bp | TTGGGTGCTTCATTAACTTGCCTTATGCTTCAGAGTTaGAAATCCCAGGGCCGTTTGGGTGCTCTTCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: LGASLTCLMLQS*KSQGRLGALLE Trigger: TTCCAGAAGAGCACCCAAACGGCCCTGGGATTTTCAACTCTGAAGCATAAGGCAAGTTAATGAAGCACCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 72 bp | GCCTTACAGCTAACACAAATGACCCGAAGCTCAGGTTaGGAGCATTTGAATCAGCTGGCTTCGTATGATGAG | + |
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Preference number: 6 (lower is better) Translates to: ALQLTQMTRSSG*EHLNQLASYDE Trigger: CTCATCATACGAAGCCAGCTGATTCAAATGCTCTCAACCTGAGCTTCGGGTCATTTGTGTTAGCTGTAAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS CAA 72 bp | ATTGGGTGCTTCATTAACTTGCCTTATGCTTCAGAGTaGAAAATCCCAGGGCCGTTTGGGTGCTCTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: IGCFINLPYASE*KIPGPFGCSSG Trigger: TCCAGAAGAGCACCCAAACGGCCCTGGGATTTTCAACTCTGAAGCATAAGGCAAGTTAATGAAGCACCCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS TCA 72 bp | GGCTTGTTGTCTCTACCTTGCTTGCTGGTGTTTCTCTaGCAGATAAAAGCTGGTGTGAATTGGGTGCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: GLLSLPCLLVFL*QIKAGVNWVLH Trigger: ATGAAGCACCCAATTCACACCAGCTTTTATCTGTCAGAGAAACACCAGCAAGCAAGGTAGAGACAACAAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS CCA 72 bp | ACCTTGCTTGCTGGTGTTTCTCTGACAGATAAAAGCTaGTGTGAATTGGGTGCTTCATTAACTTGCCTTATG | + |
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Preference number: 6 (lower is better) Translates to: TLLAGVSLTDKS*CELGASLTCLM Trigger: CATAAGGCAAGTTAATGAAGCACCCAATTCACACCAGCTTTTATCTGTCAGAGAAACACCAGCAAGCAAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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| CDS CAA 90 bp | TTCCGATTCCTAATTAACATGAAGTTCATACTTGCACATCAGGGTTaGGCTTGTTGTCTCTACCTTGCTTGCTGGTGTTTCTCTGACAGA | + |
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Preference number: 6 (lower is better) Translates to: FRFLINMKFILAHQG*ACCLYLACWCFSDR Trigger: TCTGTCAGAGAAACACCAGCAAGCAAGGTAGAGACAACAAGCCAAACCCTGATGTGCAAGTATGAACTTCATGTTAATTAGGAATCGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664708.1 |
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