Pregenerated sensors for LINC01717 (Homo sapiens)
Ensembl gene IDs: ENSG00000232812Ensembl transcript IDs: ENST00000660747.1, ENST00000661534.1, ENST00000666184.1, ENST00000671344.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATGATAGGTGACTTTGGTGCCAGGAGGGACAGAAGACCCAAGCATTaGGGTCTGGTTCTGATTCTGCCACTTGTTGGACTGACGAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: MIGDFGARRDRRPKH*GLVLILPLVGLTSH Trigger: GTGACTCGTCAGTCCAACAAGTGGCAGAATCAGAACCAGACCCCAATGCTTGGGTCTTCTGTCCCTCCTGGCACCAAAGTCACCTATCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000661534.1 ENST00000666184.1 ENST00000671344.1 |
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| CDS GCA 90 bp | TCATTCCCTCTGCCTCTGACAAACCCTAGTATTTCCCTGTGGCCCTaGATGGTCTACTGTGCCTCCTGTGTCTGGCAATCTGTGAGTATA | + |
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Preference number: 5 (lower is better) Translates to: SFPLPLTNPSISLWP*MVYCASCVWQSVSI Trigger: TATACTCACAGATTGCCAGACACAGGAGGCACAGTAGACCATGCAGGGCCACAGGGAAATACTAGGGTTTGTCAGAGGCAGAGGGAATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660747.1 ENST00000661534.1 |
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| CDS TCA 90 bp | CCACTGAGACAGCACCAAGTTCGTCAAACAGCTCCAGGAGATAAATaGGAGATGATTTTCTTTTCCAGGACCACAATAGGTAATGTTTAC | + |
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Preference number: 5 (lower is better) Translates to: PLRQHQVRQTAPGDK*EMIFFSRTTIGNVY Trigger: GTAAACATTACCTATTGTGGTCCTGGAAAAGAAAATCATCTCTCATTTATCTCCTGGAGCTGTTTGACGAACTTGGTGCTGTCTCAGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000671344.1 |
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| CDS GCA 90 bp | TTAATTTTCACTGTCAAGTCTTTGCTTCTGCAAATGCTAAGGAGTTaGAGTACCTCTGCTTCAGAATCTTTGTACTCAAACAAGTCGCAT | + |
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Preference number: 5 (lower is better) Translates to: LIFTVKSLLLQMLRS*STSASESLYSNKSH Trigger: ATGCGACTTGTTTGAGTACAAAGATTCTGAAGCAGAGGTACTGCAACTCCTTAGCATTTGCAGAAGCAAAGACTTGACAGTGAAAATTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660747.1 |
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| CDS TCA 90 bp | TACCTCTGCTTCAGAATCTTTGTACTCAAACAAGTCGCATACCTTTaGCTCTTCTTTATGTTGATAGAAATCCTCTGCATTCTTGCTCTT | + |
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Preference number: 5 (lower is better) Translates to: YLCFRIFVLKQVAYL*LFFMLIEILCILAL Trigger: AAGAGCAAGAATGCAGAGGATTTCTATCAACATAAAGAAGAGTCAAAGGTATGCGACTTGTTTGAGTACAAAGATTCTGAAGCAGAGGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660747.1 |
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| CDS CCA 72 bp | TTCCCTCTGCCTCTGACAAACCCTAGTATTTCCCTGTaGCCCTGCATGGTCTACTGTGCCTCCTGTGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: FPLPLTNPSISL*PCMVYCASCVW Trigger: CCAGACACAGGAGGCACAGTAGACCATGCAGGGCCACAGGGAAATACTAGGGTTTGTCAGAGGCAGAGGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660747.1 ENST00000661534.1 |
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| CDS TCA 72 bp | TCCTTCCCCTCTGAAACTCAAGTTACTTATGATAGGTaGCTTTGGTGCCAGGAGGGACAGAAGACCCAAGCA | + |
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Preference number: 6 (lower is better) Translates to: SFPSETQVTYDR*LWCQEGQKTQA Trigger: TGCTTGGGTCTTCTGTCCCTCCTGGCACCAAAGTCACCTATCATAAGTAACTTGAGTTTCAGAGGGGAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000661534.1 ENST00000666184.1 ENST00000671344.1 |
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| CDS CCA 72 bp | ATGGCTCTTTCCTGCAGAAACCACAATAAAGACTCTTaGCTGCTTCTCCATTTCATTCCCTCTGCCTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: MALSCRNHNKDS*LLLHFIPSASD Trigger: GTCAGAGGCAGAGGGAATGAAATGGAGAAGCAGCCAAGAGTCTTTATTGTGGTTTCTGCAGGAAAGAGCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660747.1 ENST00000661534.1 |
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| CDS CCA 72 bp | CAAGCATTGGGGTCTGGTTCTGATTCTGCCACTTGTTaGACTGACGAGTCACTTCTCTTTTCTCCATTTGCT | + |
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Preference number: 6 (lower is better) Translates to: QALGSGSDSATC*TDESLLFSPFA Trigger: AGCAAATGGAGAAAAGAGAAGTGACTCGTCAGTCCAACAAGTGGCAGAATCAGAACCAGACCCCAATGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000661534.1 ENST00000666184.1 ENST00000671344.1 |
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| CDS CAA 72 bp | CTTCCTTCTGCTGGTCCAAAATGTAGGATACATTGGTaGACTATTCCACTGAGACAGCACCAAGTTCGTCAA | + |
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Preference number: 6 (lower is better) Translates to: LPSAGPKCRIHW*TIPLRQHQVRQ Trigger: TTGACGAACTTGGTGCTGTCTCAGTGGAATAGTCAACCAATGTATCCTACATTTTGGACCAGCAGAAGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671344.1 |
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| CDS CAA 90 bp | TTCTCATTACTTCCTTCTGCTGGTCCAAAATGTAGGATACATTGGTaGACTATTCCACTGAGACAGCACCAAGTTCGTCAAACAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: FSLLPSAGPKCRIHW*TIPLRQHQVRQTAP Trigger: TGGAGCTGTTTGACGAACTTGGTGCTGTCTCAGTGGAATAGTCAACCAATGTATCCTACATTTTGGACCAGCAGAAGGAAGTAATGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671344.1 |
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| CDS TCA 72 bp | AGGGCACAAGTTCGTCAAACAGCTCCAGGAGATAAATaGGAGATGATTTTCTTTTCCAGGACCACAATAGGT | + |
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Preference number: 6 (lower is better) Translates to: RAQVRQTAPGDK*EMIFFSRTTIG Trigger: ACCTATTGTGGTCCTGGAAAAGAAAATCATCTCTCATTTATCTCCTGGAGCTGTTTGACGAACTTGTGCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661534.1 ENST00000666184.1 |
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| CDS TCA 72 bp | CAGCACCAAGTTCGTCAAACAGCTCCAGGAGATAAATaGGAGATGATTTTCTTTTCCAGGACCACAATAGGT | + |
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Preference number: 6 (lower is better) Translates to: QHQVRQTAPGDK*EMIFFSRTTIG Trigger: ACCTATTGTGGTCCTGGAAAAGAAAATCATCTCTCATTTATCTCCTGGAGCTGTTTGACGAACTTGGTGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000671344.1 |
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| CDS GCA 72 bp | TTTGCTTCTGCAAATGCTAAGGAGTTGCAGTACCTCTaGTTCAGAATCTTTGTACTCAAACAAGTCGCATAC | + |
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Preference number: 6 (lower is better) Translates to: FASANAKELQYL*FRIFVLKQVAY Trigger: GTATGCGACTTGTTTGAGTACAAAGATTCTGAAGCAGAGGTACTGCAACTCCTTAGCATTTGCAGAAGCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660747.1 |
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| CDS GCA 72 bp | ACTGTCAAGTCTTTGCTTCTGCAAATGCTAAGGAGTTaGAGTACCTCTGCTTCAGAATCTTTGTACTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: TVKSLLLQMLRS*STSASESLYSN Trigger: GTTTGAGTACAAAGATTCTGAAGCAGAGGTACTGCAACTCCTTAGCATTTGCAGAAGCAAAGACTTGACAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660747.1 |
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| CDS CAA 72 bp | ATGCTAAGGAGTTGCAGTACCTCTGCTTCAGAATCTTaGTACTCAAACAAGTCGCATACCTTTGACTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: MLRSCSTSASES*YSNKSHTFDSS Trigger: AGAAGAGTCAAAGGTATGCGACTTGTTTGAGTACAAAGATTCTGAAGCAGAGGTACTGCAACTCCTTAGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660747.1 |
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| CDS CAA 90 bp | GTACCTCTGCTTCAGAATCTTTGTACTCAAACAAGTCGCATACCTTaGACTCTTCTTTATGTTGATAGAAATCCTCTGCATTCTTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: VPLLQNLCTQTSRIP*TLLYVDRNPLHSCS Trigger: AGAGCAAGAATGCAGAGGATTTCTATCAACATAAAGAAGAGTCAAAGGTATGCGACTTGTTTGAGTACAAAGATTCTGAAGCAGAGGTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660747.1 |
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| CDS TCA 72 bp | TTCAGAATCTTTGTACTCAAACAAGTCGCATACCTTTaGCTCTTCTTTATGTTGATAGAAATCCTCTGCATT | + |
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Preference number: 6 (lower is better) Translates to: FRIFVLKQVAYL*LFFMLIEILCI Trigger: AATGCAGAGGATTTCTATCAACATAAAGAAGAGTCAAAGGTATGCGACTTGTTTGAGTACAAAGATTCTGAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660747.1 |
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