Pregenerated sensors for LINC01716 (Homo sapiens)

Ensembl gene IDs: ENSG00000225657

Ensembl transcript IDs: ENST00000434176.1, ENST00000437350.1

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGGCCACGACCTCAGACACACAGTTCCCCAGTAGGGAGCAGCTACTaGAAATTGCTGAGTGACCCTGGGCCGGGCCCCACCTCTTTCAGG	+
Preference number: 5 (lower is better) Translates to: WPRPQTHSSPVGSSY*KLLSDPGPGPTSFR Trigger: CCTGAAAGAGGTGGGGCCCGGCCCAGGGTCACTCAGCAATTTTCAGTAGCTGCTCCCTACTGGGGAACTGTGTGTCTGAGGTCGTGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS GCA 90 bp	GGTTTTGCCAGCAACCTTCAGGGCTGGGGTATTTCCAGCAAGGGATaGCCCGACTCCTCTTCCCACGGGTGTACTCTGTGGTCACACTAT	+
Preference number: 5 (lower is better) Translates to: GFASNLQGWGISSKG*PDSSSHGCTLWSHY Trigger: ATAGTGTGACCACAGAGTACACCCGTGGGAAGAGGAGTCGGGGCATCCCTTGCTGGAAATACCCCAGCCCTGAAGGTTGCTGGCAAAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS CCA 90 bp	GTGCAGGAACCGGGACTTGAACTCAGGCCTATAGACCCTGAACTTTaGTGGGAGGAGAGACCTGGGTCCAAATCCTGTCTCCACAAGTAC	+
Preference number: 5 (lower is better) Translates to: VQEPGLELRPIDPEL*WEERPGSKSCLHKY Trigger: GTACTTGTGGAGACAGGATTTGGACCCAGGTCTCTCCTCCCACCAAAGTTCAGGGTCTATAGGCCTGAGTTCAAGTCCCGGTTCCTGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS CCA 90 bp	ACTATGAAAATGAGCACTTTGGTCAGAAGAAGCTCTTTGGACAGATaGCCACGACCTCAGACACACAGTTCCCCAGTAGGGAGCAGCTAC	+
Preference number: 5 (lower is better) Translates to: TMKMSTLVRRSSLDR*PRPQTHSSPVGSSY Trigger: GTAGCTGCTCCCTACTGGGGAACTGTGTGTCTGAGGTCGTGGCCATCTGTCCAAAGAGCTTCTTCTGACCAAAGTGCTCATTTTCATAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS GCA 72 bp	AGCAACCTTCAGGGCTGGGGTATTTCCAGCAAGGGATaGCCCGACTCCTCTTCCCACGGGTGTACTCTGTGG	+
Preference number: 6 (lower is better) Translates to: SNLQGWGISSKG*PDSSSHGCTLW Trigger: CCACAGAGTACACCCGTGGGAAGAGGAGTCGGGGCATCCCTTGCTGGAAATACCCCAGCCCTGAAGGTTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS CCA 72 bp	ATTGGTTCCAGGACTCTCCTCAGGCACCAAAATCCATaGATGCTCAAGTCCCTGGACCTGACCCTCTGGGGG	+
Preference number: 6 (lower is better) Translates to: IGSRTLLRHQNP*MLKSLDLTLWG Trigger: CCCCCAGAGGGTCAGGTCCAGGGACTTGAGCATCCATGGATTTTGGTGCCTGAGGAGAGTCCTGGAACCAAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437350.1
CDS CCA 72 bp	CCGGGACTTGAACTCAGGCCTATAGACCCTGAACTTTaGTGGGAGGAGAGACCTGGGTCCAAATCCTGTCTC	+
Preference number: 6 (lower is better) Translates to: PGLELRPIDPEL*WEERPGSKSCL Trigger: GAGACAGGATTTGGACCCAGGTCTCTCCTCCCACCAAAGTTCAGGGTCTATAGGCCTGAGTTCAAGTCCCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS CCA 72 bp	GGACTTGAACTCAGGCCTATAGACCCTGAACTTTGGTaGGAGGAGAGACCTGGGTCCAAATCCTGTCTCCAC	+
Preference number: 6 (lower is better) Translates to: GLELRPIDPELW*EERPGSKSCLH Trigger: GTGGAGACAGGATTTGGACCCAGGTCTCTCCTCCCACCAAAGTTCAGGGTCTATAGGCCTGAGTTCAAGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS CCA 72 bp	GTCCCCATGAGTCGGATACAGAACCTGAATCCTCTTTaGTCATATGGCTGGGAGTGCAGGAACCGGGACTTG	+
Preference number: 6 (lower is better) Translates to: VPMSRIQNLNPL*SYGWECRNRDL Trigger: CAAGTCCCGGTTCCTGCACTCCCAGCCATATGACCAAAGAGGATTCAGGTTCTGTATCCGACTCATGGGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS CAA 72 bp	TGTCCCCATGAGTCGGATACAGAACCTGAATCCTCTTaGGTCATATGGCTGGGAGTGCAGGAACCGGGACTT	+
Preference number: 6 (lower is better) Translates to: CPHESDTEPESS*VIWLGVQEPGL Trigger: AAGTCCCGGTTCCTGCACTCCCAGCCATATGACCAAAGAGGATTCAGGTTCTGTATCCGACTCATGGGGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS CAA 72 bp	GTTCTTCTCCAGTCAGGAAAAGCACGTGCTAGGTCTTaGCATGATGTCCCATGTCCTGGGCATCTGGAGGTA	+
Preference number: 6 (lower is better) Translates to: VLLQSGKARARS*HDVPCPGHLEV Trigger: TACCTCCAGATGCCCAGGACATGGGACATCATGCAAAGACCTAGCACGTGCTTTTCCTGACTGGAGAAGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS CAA 72 bp	ACGCATGTGGTAATTGGGGCACAAGAGAATCCACCGTaGTGTCTAAACCATGGGGCTCTGAAGAACCCACAG	+
Preference number: 6 (lower is better) Translates to: THVVIGAQENPP*CLNHGALKNPQ Trigger: CTGTGGGTTCTTCAGAGCCCCATGGTTTAGACACAACGGTGGATTCTCTTGTGCCCCAATTACCACATGCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437350.1
CDS CAA 90 bp	TGTGGTCACACTATGAAAATGAGCACTTTGGTCAGAAGAAGCTCTTaGGACAGATGGCCACGACCTCAGACACACAGTTCCCCAGTAGGG	+
Preference number: 6 (lower is better) Translates to: CGHTMKMSTLVRRSS*DRWPRPQTHSSPVG Trigger: CCCTACTGGGGAACTGTGTGTCTGAGGTCGTGGCCATCTGTCCAAAGAGCTTCTTCTGACCAAAGTGCTCATTTTCATAGTGTGACCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434176.1
CDS CCA 72 bp	GGTTCAAGCTCTTCTCCCCATGACGCATGTGGTAATTaGGGCACAAGAGAATCCACCGTTGTGTCTAAACCA	+
Preference number: 6 (lower is better) Translates to: GSSSSPHDACGN*GTRESTVVSKP Trigger: TGGTTTAGACACAACGGTGGATTCTCTTGTGCCCCAATTACCACATGCGTCATGGGGAGAAGAGCTTGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437350.1
CDS CAA 72 bp	ACTATGAAAATGAGCACTTTGGTCAGAAGAAGCTCTTaGGACAGATGGCCACGACCTCAGACACACAGTTCC	+
Preference number: 6 (lower is better) Translates to: TMKMSTLVRRSS*DRWPRPQTHSS Trigger: GGAACTGTGTGTCTGAGGTCGTGGCCATCTGTCCAAAGAGCTTCTTCTGACCAAAGTGCTCATTTTCATAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434176.1