Pregenerated sensors for LINC01713 (Homo sapiens)
Ensembl gene IDs: ENSG00000228482Ensembl transcript IDs: ENST00000445589.1, ENST00000655019.1, ENST00000658541.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TATCCAATTGCTGCCTTCCTCCAGCTGGCGCGCTACCCAGGCAGTTaGATTTACTCCATGCTCCAACACTTTCTCTATGAGCTGTGCTAC | + |
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Preference number: 5 (lower is better) Translates to: YPIAAFLQLARYPGS*IYSMLQHFLYELCY Trigger: GTAGCACAGCTCATAGAGAAAGTGTTGGAGCATGGAGTAAATTCAACTGCCTGGGTAGCGCGCCAGCTGGAGGAAGGCAGCAATTGGATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS TCA 90 bp | CTCTGTCTGTCTCTCTCACTCCCTTCCTCCTCTCTCTCATTTTCCTaGCACAAATCCAGTTATCCAATTGCTGCCTTCCTCCAGCTGGCG | + |
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Preference number: 5 (lower is better) Translates to: LCLSLSLPSSSLSFS*HKSSYPIAAFLQLA Trigger: CGCCAGCTGGAGGAAGGCAGCAATTGGATAACTGGATTTGTGTCAGGAAAATGAGAGAGAGGAGGAAGGGAGTGAGAGAGACAGACAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS GCA 90 bp | CTCCTCTCTCTCATTTTCCTGACACAAATCCAGTTATCCAATTGCTaGCTTCCTCCAGCTGGCGCGCTACCCAGGCAGTTGAATTTACTC | + |
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Preference number: 5 (lower is better) Translates to: LLSLIFLTQIQLSNC*LPPAGALPRQLNLL Trigger: GAGTAAATTCAACTGCCTGGGTAGCGCGCCAGCTGGAGGAAGGCAGCAATTGGATAACTGGATTTGTGTCAGGAAAATGAGAGAGAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS CCA 90 bp | TTTCCTGACACAAATCCAGTTATCCAATTGCTGCCTTCCTCCAGCTaGCGCGCTACCCAGGCAGTTGAATTTACTCCATGCTCCAACACT | + |
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Preference number: 5 (lower is better) Translates to: FPDTNPVIQLLPSSS*RATQAVEFTPCSNT Trigger: AGTGTTGGAGCATGGAGTAAATTCAACTGCCTGGGTAGCGCGCCAGCTGGAGGAAGGCAGCAATTGGATAACTGGATTTGTGTCAGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS GCA 90 bp | TTCCTCCTCTCTCTCATTTTCCTGACACAAATCCAGTTATCCAATTaGTGCCTTCCTCCAGCTGGCGCGCTACCCAGGCAGTTGAATTTA | + |
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Preference number: 5 (lower is better) Translates to: FLLSLIFLTQIQLSN*CLPPAGALPRQLNL Trigger: TAAATTCAACTGCCTGGGTAGCGCGCCAGCTGGAGGAAGGCAGCAATTGGATAACTGGATTTGTGTCAGGAAAATGAGAGAGAGGAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS TCA 90 bp | TTTAATAGCCTCTCTCAGCCCCTCCCCTGGGAACATATTATTATGTaGTCATTAGTGATGGGCAAACCTCACTGGGTTTCCAGGTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: FNSLSQPLPWEHIIM*SLVMGKPHWVSRFE Trigger: CTCAAACCTGGAAACCCAGTGAGGTTTGCCCATCACTAATGATCACATAATAATATGTTCCCAGGGGAGGGGCTGAGAGAGGCTATTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658541.1 |
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| CDS TCA 90 bp | AAGCATGAGTTTCTTGCTGGTTTCTCTCCATTGAGGTGCACTGGATaGAACAGAATTGTAATCAGGCCCCAATTACTGGCACAACCAGAA | + |
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Preference number: 5 (lower is better) Translates to: KHEFLAGFSPLRCTG*NRIVIRPQLLAQPE Trigger: TTCTGGTTGTGCCAGTAATTGGGGCCTGATTACAATTCTGTTTCATCCAGTGCACCTCAATGGAGAGAAACCAGCAAGAAACTCATGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000445589.1 ENST00000655019.1 ENST00000658541.1 |
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| CDS CCA 72 bp | AAGGCTTCCTTGACCCCAGTTTCAAGCTCAGGGCTTTaGGGGGTGATGGTAGCCTGGGCCAGAGGACACGGC | + |
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Preference number: 6 (lower is better) Translates to: KASLTPVSSSGL*GVMVAWARGHG Trigger: GCCGTGTCCTCTGGCCCAGGCTACCATCACCCCCCAAAGCCCTGAGCTTGAAACTGGGGTCAAGGAAGCCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS TCA 72 bp | GCTGCCTTCCTCCAGCTGGCGCGCTACCCAGGCAGTTaGATTTACTCCATGCTCCAACACTTTCTCTATGAG | + |
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Preference number: 6 (lower is better) Translates to: AAFLQLARYPGS*IYSMLQHFLYE Trigger: CTCATAGAGAAAGTGTTGGAGCATGGAGTAAATTCAACTGCCTGGGTAGCGCGCCAGCTGGAGGAAGGCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS GCA 72 bp | TCTCTCATTTTCCTGACACAAATCCAGTTATCCAATTaGTGCCTTCCTCCAGCTGGCGCGCTACCCAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: SLIFLTQIQLSN*CLPPAGALPRQ Trigger: CTGCCTGGGTAGCGCGCCAGCTGGAGGAAGGCAGCAATTGGATAACTGGATTTGTGTCAGGAAAATGAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS CAA 72 bp | CTCTCTCATTTTCCTGACACAAATCCAGTTATCCAATaGCTGCCTTCCTCCAGCTGGCGCGCTACCCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: LSHFPDTNPVIQ*LPSSSWRATQA Trigger: TGCCTGGGTAGCGCGCCAGCTGGAGGAAGGCAGCAATTGGATAACTGGATTTGTGTCAGGAAAATGAGAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS TCA 72 bp | AGGGCAGAGCCACAACAGGGAAAGAGGTTGGGTAACTaGTTGATCATGTGGAAGGCTTCCTTGACCCCAGTT | + |
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Preference number: 6 (lower is better) Translates to: RAEPQQGKRLGN*LIMWKASLTPV Trigger: AACTGGGGTCAAGGAAGCCTTCCACATGATCAATCAGTTACCCAACCTCTTTCCCTGTTGTGGCTCTGCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS CAA 90 bp | CTTCCTCCTCTCTCTCATTTTCCTGACACAAATCCAGTTATCCAATaGCTGCCTTCCTCCAGCTGGCGCGCTACCCAGGCAGTTGAATTT | + |
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Preference number: 6 (lower is better) Translates to: LPPLSHFPDTNPVIQ*LPSSSWRATQAVEF Trigger: AAATTCAACTGCCTGGGTAGCGCGCCAGCTGGAGGAAGGCAGCAATTGGATAACTGGATTTGTGTCAGGAAAATGAGAGAGAGGAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS CCA 72 bp | CTTTTCTTAGAAGGGTTCCCATTCCAACTGGGATGCTaGGACAAACAGGCCAATAGATGTGTTGACGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LFLEGFPFQLGC*DKQANRCVDEG Trigger: GCCTTCGTCAACACATCTATTGGCCTGTTTGTCCCAGCATCCCAGTTGGAATGGGAACCCTTCTAAGAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000445589.1 ENST00000655019.1 ENST00000658541.1 |
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| CDS TCA 72 bp | TCTCTCTCACTCCCTTCCTCCTCTCTCTCATTTTCCTaGCACAAATCCAGTTATCCAATTGCTGCCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: SLSLPSSSLSFS*HKSSYPIAAFL Trigger: GAGGAAGGCAGCAATTGGATAACTGGATTTGTGTCAGGAAAATGAGAGAGAGGAGGAAGGGAGTGAGAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445589.1 |
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| CDS GCA 72 bp | AGGCTTTTCTTAGAAGGGTTCCCATTCCAACTGGGATaGTGGGACAAACAGGCCAATAGATGTGTTGACGAA | + |
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Preference number: 6 (lower is better) Translates to: RLFLEGFPFQLG*WDKQANRCVDE Trigger: TTCGTCAACACATCTATTGGCCTGTTTGTCCCAGCATCCCAGTTGGAATGGGAACCCTTCTAAGAAAAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000445589.1 ENST00000655019.1 ENST00000658541.1 |
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| CDS CAA 72 bp | AACTGGGATGCTGGGACAAACAGGCCAATAGATGTGTaGACGAAGGCATGCAGACATTGCTCCACCAATATA | + |
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Preference number: 6 (lower is better) Translates to: NWDAGTNRPIDV*TKACRHCSTNI Trigger: TATATTGGTGGAGCAATGTCTGCATGCCTTCGTCAACACATCTATTGGCCTGTTTGTCCCAGCATCCCAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000445589.1 ENST00000655019.1 ENST00000658541.1 |
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| CDS CAA 72 bp | CAGGCCAATAGATGTGTTGACGAAGGCATGCAGACATaGCTCCACCAATATACTTTAAGGACTAAGCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: QANRCVDEGMQT*LHQYTLRTKQS Trigger: TGACTGCTTAGTCCTTAAAGTATATTGGTGGAGCAATGTCTGCATGCCTTCGTCAACACATCTATTGGCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000445589.1 ENST00000655019.1 ENST00000658541.1 |
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| CDS CAA 90 bp | TGGGACAAACAGGCCAATAGATGTGTTGACGAAGGCATGCAGACATaGCTCCACCAATATACTTTAAGGACTAAGCAGTCAAGTTTACAG | + |
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Preference number: 6 (lower is better) Translates to: WDKQANRCVDEGMQT*LHQYTLRTKQSSLQ Trigger: CTGTAAACTTGACTGCTTAGTCCTTAAAGTATATTGGTGGAGCAATGTCTGCATGCCTTCGTCAACACATCTATTGGCCTGTTTGTCCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000445589.1 ENST00000655019.1 ENST00000658541.1 |
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