RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01711 (Homo sapiens)

Ensembl gene IDs: ENSG00000268941

Ensembl transcript IDs: ENST00000598340.2

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GCAGAGGTGCAGAGAAGCCTCTGGGGCCTGCTGCTCTGTGTCCTGTaGCAGCATCAGCCCCTGCGGCGGAGGGAGAGATGCCGGGACAGG +
Preference number: 5 (lower is better)
Translates to: AEVQRSLWGLLLCVL*QHQPLRRRERCRDR
Trigger: CCTGTCCCGGCATCTCTCCCTCCGCCGCAGGGGCTGATGCTGCCACAGGACACAGAGCAGCAGGCCCCAGAGGCTTCTCTGCACCTCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS GCA 90 bp TGTGTGGACTTGGTGGCCCATAAGAGGCTCTCGGTGACGCGGGGCTaGAGCACATCACACGACATGGAGCAGATCCGCCAGCGAGGCCCC +
Preference number: 5 (lower is better)
Translates to: CVDLVAHKRLSVTRG*STSHDMEQIRQRGP
Trigger: GGGGCCTCGCTGGCGGATCTGCTCCATGTCGTGTGATGTGCTGCAGCCCCGCGTCACCGAGAGCCTCTTATGGGCCACCAAGTCCACACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS TCA 90 bp TCAGCCCCTGCGGCGGAGGGAGAGATGCCGGGACAGGCAGTAGTGTaGGTGTTTCCAGCCATCAGGTTCTGTAGGGGAGCACGCAGTCCC +
Preference number: 5 (lower is better)
Translates to: SAPAAEGEMPGQAVV*VFPAIRFCRGARSP
Trigger: GGGACTGCGTGCTCCCCTACAGAACCTGATGGCTGGAAACACTCACACTACTGCCTGTCCCGGCATCTCTCCCTCCGCCGCAGGGGCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS TCA 90 bp TGGCCAGTGGCTGTGTGGACTTGGTGGCCCATAAGAGGCTCTCGGTaGCGCGGGGCTGCAGCACATCACACGACATGGAGCAGATCCGCC +
Preference number: 5 (lower is better)
Translates to: WPVAVWTWWPIRGSR*RGAAAHHTTWSRSA
Trigger: GGCGGATCTGCTCCATGTCGTGTGATGTGCTGCAGCCCCGCGTCACCGAGAGCCTCTTATGGGCCACCAAGTCCACACAGCCACTGGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS GCA 90 bp GATTACTCAGAAAGGCAGCAGAGGTGCAGAGAAGCCTCTGGGGCCTaGTGCTCTGTGTCCTGTGGCAGCATCAGCCCCTGCGGCGGAGGG +
Preference number: 5 (lower is better)
Translates to: DYSERQQRCREASGA*CSVSCGSISPCGGG
Trigger: CCCTCCGCCGCAGGGGCTGATGCTGCCACAGGACACAGAGCAGCAGGCCCCAGAGGCTTCTCTGCACCTCTGCTGCCTTTCTGAGTAATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS TCA 90 bp CCCAGAAGGCCCGTGTGGGTGTCCTGGAGTGGGTGTGGCCTCCTCTaGTTACTCAGAAAGGCAGCAGAGGTGCAGAGAAGCCTCTGGGGC +
Preference number: 5 (lower is better)
Translates to: PRRPVWVSWSGCGLL*LLRKAAEVQRSLWG
Trigger: GCCCCAGAGGCTTCTCTGCACCTCTGCTGCCTTTCTGAGTAATCAGAGGAGGCCACACCCACTCCAGGACACCCACACGGGCCTTCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CCA 90 bp AGCGTCATCGCCCAGAAGGCCCGTGTGGGTGTCCTGGAGTGGGTGTaGCCTCCTCTGATTACTCAGAAAGGCAGCAGAGGTGCAGAGAAG +
Preference number: 5 (lower is better)
Translates to: SVIAQKARVGVLEWV*PPLITQKGSRGAEK
Trigger: CTTCTCTGCACCTCTGCTGCCTTTCTGAGTAATCAGAGGAGGCCACACCCACTCCAGGACACCCACACGGGCCTTCTGGGCGATGACGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS TCA 90 bp CGATTTGTCAGTTTGTTTGGCCCTCGATGGGGAGGCATCCATCCTTaGCCCTCGGAGAGTCCTGAGAGACAGGAGGAGAGGGGTTCTCCA +
Preference number: 5 (lower is better)
Translates to: RFVSLFGPRWGGIHP*PSESPERQEERGSP
Trigger: TGGAGAACCCCTCTCCTCCTGTCTCTCAGGACTCTCCGAGGGTCAAGGATGGATGCCTCCCCATCGAGGGCCAAACAAACTGACAAATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CCA 90 bp TGGCCTTTGAGTAAGCCGTTTGCCCACTCGATTTGTCAGTTTGTTTaGCCCTCGATGGGGAGGCATCCATCCTTGACCCTCGGAGAGTCC +
Preference number: 5 (lower is better)
Translates to: WPLSKPFAHSICQFV*PSMGRHPSLTLGES
Trigger: GGACTCTCCGAGGGTCAAGGATGGATGCCTCCCCATCGAGGGCCAAACAAACTGACAAATCGAGTGGGCAAACGGCTTACTCAAAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS GCA 90 bp AAGAAAGTGAGAAGAGAGAGGTCGAGGGAGCAGTCATCGGGTAGCTaGTCCTGGCCTTTGAGTAAGCCGTTTGCCCACTCGATTTGTCAG +
Preference number: 5 (lower is better)
Translates to: KKVRRERSREQSSGS*SWPLSKPFAHSICQ
Trigger: CTGACAAATCGAGTGGGCAAACGGCTTACTCAAAGGCCAGGAGCAGCTACCCGATGACTGCTCCCTCGACCTCTCTCTTCTCACTTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CCA 90 bp GTGAGAAGAGAGAGGTCGAGGGAGCAGTCATCGGGTAGCTGCTCCTaGCCTTTGAGTAAGCCGTTTGCCCACTCGATTTGTCAGTTTGTT +
Preference number: 5 (lower is better)
Translates to: VRRERSREQSSGSCS*PLSKPFAHSICQFV
Trigger: AACAAACTGACAAATCGAGTGGGCAAACGGCTTACTCAAAGGCCAGGAGCAGCTACCCGATGACTGCTCCCTCGACCTCTCTCTTCTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CCA 90 bp ACTTGTTTTTATTTCCAAACGTGTAACAGGCCACCCATCAAAGGATaGAATAGGGAAGAAAGTGAGAAGAGAGAGGTCGAGGGAGCAGTC +
Preference number: 5 (lower is better)
Translates to: TCFYFQTCNRPPIKG*NREESEKREVEGAV
Trigger: GACTGCTCCCTCGACCTCTCTCTTCTCACTTTCTTCCCTATTCCATCCTTTGATGGGTGGCCTGTTACACGTTTGGAAATAAAAACAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CAA 90 bp TCCAGAGGCCCTGCAGGGTGCCCCATGGCCAGTGGCTGTGTGGACTaGGTGGCCCATAAGAGGCTCTCGGTGACGCGGGGCTGCAGCACA +
Preference number: 6 (lower is better)
Translates to: SRGPAGCPMASGCVD*VAHKRLSVTRGCST
Trigger: TGTGCTGCAGCCCCGCGTCACCGAGAGCCTCTTATGGGCCACCAAGTCCACACAGCCACTGGCCATGGGGCACCCTGCAGGGCCTCTGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS GCA 72 bp GCCTGCTGCTCTGTGTCCTGTGGCAGCATCAGCCCCTaGGGCGGAGGGAGAGATGCCGGGACAGGCAGTAGT +
Preference number: 6 (lower is better)
Translates to: ACCSVSCGSISP*GGGRDAGTGSS
Trigger: ACTACTGCCTGTCCCGGCATCTCTCCCTCCGCCGCAGGGGCTGATGCTGCCACAGGACACAGAGCAGCAGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CAA 90 bp CCATCAGGTTCTGTAGGGGAGCACGCAGTCCCAGGGGAGGCCCACTaGGGTCCCAGCGGACCGTTAAGAAAGCTCTCCTCTATGGCTGCC +
Preference number: 6 (lower is better)
Translates to: PSGSVGEHAVPGEAH*GPSGPLRKLSSMAA
Trigger: GGCAGCCATAGAGGAGAGCTTTCTTAACGGTCCGCTGGGACCCAAGTGGGCCTCCCCTGGGACTGCGTGCTCCCCTACAGAACCTGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS TCA 72 bp GCTGTGTGGACTTGGTGGCCCATAAGAGGCTCTCGGTaGCGCGGGGCTGCAGCACATCACACGACATGGAGC +
Preference number: 6 (lower is better)
Translates to: AVWTWWPIRGSR*RGAAAHHTTWS
Trigger: GCTCCATGTCGTGTGATGTGCTGCAGCCCCGCGTCACCGAGAGCCTCTTATGGGCCACCAAGTCCACACAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS GCA 72 bp TTGGTGGCCCATAAGAGGCTCTCGGTGACGCGGGGCTaGAGCACATCACACGACATGGAGCAGATCCGCCAG +
Preference number: 6 (lower is better)
Translates to: LVAHKRLSVTRG*STSHDMEQIRQ
Trigger: CTGGCGGATCTGCTCCATGTCGTGTGATGTGCTGCAGCCCCGCGTCACCGAGAGCCTCTTATGGGCCACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS TCA 72 bp GCGGCGGAGGGAGAGATGCCGGGACAGGCAGTAGTGTaGGTGTTTCCAGCCATCAGGTTCTGTAGGGGAGCA +
Preference number: 6 (lower is better)
Translates to: AAEGEMPGQAVV*VFPAIRFCRGA
Trigger: TGCTCCCCTACAGAACCTGATGGCTGGAAACACTCACACTACTGCCTGTCCCGGCATCTCTCCCTCCGCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS GCA 72 bp AGAAGAGAGAGGTCGAGGGAGCAGTCATCGGGTAGCTaGTCCTGGCCTTTGAGTAAGCCGTTTGCCCACTCG +
Preference number: 6 (lower is better)
Translates to: RRERSREQSSGS*SWPLSKPFAHS
Trigger: CGAGTGGGCAAACGGCTTACTCAAAGGCCAGGAGCAGCTACCCGATGACTGCTCCCTCGACCTCTCTCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CCA 72 bp TTACTCAGAAAGGCAGCAGAGGTGCAGAGAAGCCTCTaGGGCCTGCTGCTCTGTGTCCTGTGGCAGCATCAG +
Preference number: 6 (lower is better)
Translates to: LLRKAAEVQRSL*GLLLCVLWQHQ
Trigger: CTGATGCTGCCACAGGACACAGAGCAGCAGGCCCCAGAGGCTTCTCTGCACCTCTGCTGCCTTTCTGAGTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS GCA 72 bp TCCCAGCGGACCGTTAAGAAAGCTCTCCTCTATGGCTaGCCGAACTGTGGTGGGTATGGCCTGACCTTGACT +
Preference number: 6 (lower is better)
Translates to: SQRTVKKALLYG*PNCGGYGLTLT
Trigger: AGTCAAGGTCAGGCCATACCCACCACAGTTCGGGCAGCCATAGAGGAGAGCTTTCTTAACGGTCCGCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CCA 72 bp GAGAGGTCGAGGGAGCAGTCATCGGGTAGCTGCTCCTaGCCTTTGAGTAAGCCGTTTGCCCACTCGATTTGT +
Preference number: 6 (lower is better)
Translates to: ERSREQSSGSCS*PLSKPFAHSIC
Trigger: ACAAATCGAGTGGGCAAACGGCTTACTCAAAGGCCAGGAGCAGCTACCCGATGACTGCTCCCTCGACCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CAA 90 bp AGAGAGAGGTCGAGGGAGCAGTCATCGGGTAGCTGCTCCTGGCCTTaGAGTAAGCCGTTTGCCCACTCGATTTGTCAGTTTGTTTGGCCC +
Preference number: 6 (lower is better)
Translates to: RERSREQSSGSCSWP*SKPFAHSICQFVWP
Trigger: GGGCCAAACAAACTGACAAATCGAGTGGGCAAACGGCTTACTCAAAGGCCAGGAGCAGCTACCCGATGACTGCTCCCTCGACCTCTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CCA 72 bp AGTAAGCCGTTTGCCCACTCGATTTGTCAGTTTGTTTaGCCCTCGATGGGGAGGCATCCATCCTTGACCCTC +
Preference number: 6 (lower is better)
Translates to: SKPFAHSICQFV*PSMGRHPSLTL
Trigger: GAGGGTCAAGGATGGATGCCTCCCCATCGAGGGCCAAACAAACTGACAAATCGAGTGGGCAAACGGCTTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598340.2
CDS CAA 72 bp TCGAGGGAGCAGTCATCGGGTAGCTGCTCCTGGCCTTaGAGTAAGCCGTTTGCCCACTCGATTTGTCAGTTT +
Preference number: 6 (lower is better)
Translates to: SREQSSGSCSWP*SKPFAHSICQF
Trigger: AAACTGACAAATCGAGTGGGCAAACGGCTTACTCAAAGGCCAGGAGCAGCTACCCGATGACTGCTCCCTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000598340.2