Pregenerated sensors for LINC01710 (Homo sapiens)

Ensembl gene IDs: ENSG00000225561

Ensembl transcript IDs: ENST00000446002.1, ENST00000655362.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CATCTGTTTATTTACCTTTACAAATCGAACCATTGCATTTTCATGTaGGTAAGGATAGAGAGAGGACTGGAGTATTGCATTAGTAGATGT	+
Preference number: 5 (lower is better) Translates to: HLFIYLYKSNHCIFM*VRIERGLEYCISRC Trigger: ACATCTACTAATGCAATACTCCAGTCCTCTCTCTATCCTTACTCACATGAAAATGCAATGGTTCGATTTGTAAAGGTAAATAAACAGATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000446002.1 ENST00000655362.1
CDS CAA 90 bp	GGAGGGCTTAGAAAAGACTGTTTCTCCAGATTCTTCTTGGCCTGTTaGTGTAGTTCCTTCCCTCTGTGTATAGAGCAGGACACTTGTCAC	+
Preference number: 6 (lower is better) Translates to: GGLRKDCFSRFFLAC*CSSFPLCIEQDTCH Trigger: GTGACAAGTGTCCTGCTCTATACACAGAGGGAAGGAACTACACAAACAGGCCAAGAAGAATCTGGAGAAACAGTCTTTTCTAAGCCCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655362.1
CDS CAA 90 bp	GTAAACTGGGGAGGGCTTAGAAAAGACTGTTTCTCCAGATTCTTCTaGGCCTGTTTGTGTAGTTCCTTCCCTCTGTGTATAGAGCAGGAC	+
Preference number: 6 (lower is better) Translates to: VNWGGLRKDCFSRFF*ACLCSSFPLCIEQD Trigger: GTCCTGCTCTATACACAGAGGGAAGGAACTACACAAACAGGCCAAGAAGAATCTGGAGAAACAGTCTTTTCTAAGCCCTCCCCAGTTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655362.1
CDS CAA 72 bp	AGAAAAGACTGTTTCTCCAGATTCTTCTTGGCCTGTTaGTGTAGTTCCTTCCCTCTGTGTATAGAGCAGGAC	+
Preference number: 6 (lower is better) Translates to: RKDCFSRFFLAC*CSSFPLCIEQD Trigger: GTCCTGCTCTATACACAGAGGGAAGGAACTACACAAACAGGCCAAGAAGAATCTGGAGAAACAGTCTTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655362.1
CDS CAA 72 bp	GGAGGGCTTAGAAAAGACTGTTTCTCCAGATTCTTCTaGGCCTGTTTGTGTAGTTCCTTCCCTCTGTGTATA	+
Preference number: 6 (lower is better) Translates to: GGLRKDCFSRFF*ACLCSSFPLCI Trigger: TATACACAGAGGGAAGGAACTACACAAACAGGCCAAGAAGAATCTGGAGAAACAGTCTTTTCTAAGCCCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655362.1
CDS TCA 72 bp	TATTGCATTAGTAGATGTTTCACCACATGGAAGGAGTaGGCAAAACTATTTCTCCTAACCTCTCTGTTCTTG	+
Preference number: 6 (lower is better) Translates to: YCISRCFTTWKE*AKLFLLTSLFL Trigger: CAAGAACAGAGAGGTTAGGAGAAATAGTTTTGCTCACTCCTTCCATGTGGTGAAACATCTACTAATGCAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000446002.1 ENST00000655362.1

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