Pregenerated sensors for LINC01709 (Homo sapiens)
Ensembl gene IDs: ENSG00000226715Ensembl transcript IDs: ENST00000415532.2, ENST00000635702.1, ENST00000648951.1, ENST00000655157.1, ENST00000656484.1, ENST00000657394.1, ENST00000660911.1, ENST00000662434.1, ENST00000663157.1, ENST00000664322.1, ENST00000665036.1, ENST00000666574.1, ENST00000668955.1, ENST00000669180.1
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GAAGGCAATACCCGTAGTCTGTTCTTTGTCCCAGGGCTGTTTACCTaGTTCACAGATACCACAGGCAGAAATGCTGCTGTCACAGCATTG | + |
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Preference number: 5 (lower is better) Translates to: EGNTRSLFFVPGLFT*FTDTTGRNAAVTAL Trigger: CAATGCTGTGACAGCAGCATTTCTGCCTGTGGTATCTGTGAAGCAGGTAAACAGCCCTGGGACAAAGAACAGACTACGGGTATTGCCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000635702.1 ENST00000663157.1 ENST00000668955.1 |
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| CDS GCA 90 bp | GGAAAGCTCGACGTTTGCCCTGAATTCTTTACTTCCTTACTCCCGTaGCTTTCTCTTGAAAGTCAGTGGTGTCTGCCTGGAAGCCAACTA | + |
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Preference number: 5 (lower is better) Translates to: GKLDVCPEFFTSLLP*LSLESQWCLPGSQL Trigger: TAGTTGGCTTCCAGGCAGACACCACTGACTTTCAAGAGAAAGGCACGGGAGTAAGGAAGTAAAGAATTCAGGGCAAACGTCGAGCTTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000415532.2 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000668955.1 |
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| CDS TCA 90 bp | ATGGTTCACGAGCGTGGCTTCCAGTCTAACAGCATCAGCATCACATaGGGACTTGTTATAAAGGCCAGTTTTTGTGCTCTCACACCAGAG | + |
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Preference number: 5 (lower is better) Translates to: MVHERGFQSNSISIT*GLVIKASFCALTPE Trigger: CTCTGGTGTGAGAGCACAAAAACTGGCCTTTATAACAAGTCCTCATGTGATGCTGATGCTGTTAGACTGGAAGCCACGCTCGTGAACCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000656484.1 ENST00000660911.1 ENST00000666574.1 |
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| CDS GCA 90 bp | CTATCCACTTCTTTTACATTGGAGCCCAGAGGAAAGCTCGACGTTTaGCCTGAATTCTTTACTTCCTTACTCCCGTGCCTTTCTCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: LSTSFTLEPRGKLDV*PEFFTSLLPCLSLE Trigger: TTCAAGAGAAAGGCACGGGAGTAAGGAAGTAAAGAATTCAGGGCAAACGTCGAGCTTTCCTCTGGGCTCCAATGTAAAAGAAGTGGATAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000415532.2 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000668955.1 |
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| CDS GCA 90 bp | TGTCCCAGGGCTGTTTACCTGCTTCACAGATACCACAGGCAGAAATaGTGCTGTCACAGCATTGTGATTCCATTTTTCACAGATTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: CPRAVYLLHRYHRQK*CCHSIVIPFFTDSE Trigger: TTCAGAATCTGTGAAAAATGGAATCACAATGCTGTGACAGCAGCATTTCTGCCTGTGGTATCTGTGAAGCAGGTAAACAGCCCTGGGACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000635702.1 ENST00000663157.1 ENST00000668955.1 |
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| CDS GCA 90 bp | TTGTATTTTCAAGCAGCACCTGAATTCTTTACTTCCTTACTCCCGTaGCTTTCTCTTGAAAGTCAGTGGTGTCTGCCTGGAAGCCAACTA | + |
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Preference number: 5 (lower is better) Translates to: LYFQAAPEFFTSLLP*LSLESQWCLPGSQL Trigger: TAGTTGGCTTCCAGGCAGACACCACTGACTTTCAAGAGAAAGGCACGGGAGTAAGGAAGTAAAGAATTCAGGTGCTGCTTGAAAATACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000635702.1 ENST00000657394.1 ENST00000660911.1 ENST00000662434.1 ENST00000666574.1 |
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| CDS GCA 90 bp | ACAGCTACCAGCATTAGTTCTAGAGGCTGGGAAGTCCAAGATCAATaGACTGGCATCTGGTGTCAAGTAAGAGTCTTTTCTCTGCTTTTA | + |
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Preference number: 5 (lower is better) Translates to: TATSISSRGWEVQDQ*TGIWCQVRVFSLLL Trigger: TAAAAGCAGAGAAAAGACTCTTACTTGACACCAGATGCCAGTGCATTGATCTTGGACTTCCCAGCCTCTAGAACTAATGCTGGTAGCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663157.1 |
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| CDS GCA 90 bp | ATGAGCTCCATAGTGAATTCTGAATTCTTTACTTCCTTACTCCCGTaGCTTTCTCTTGAAAGTCAGTGGTGTCTGCCTGGAAGCCAACTA | + |
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Preference number: 5 (lower is better) Translates to: MSSIVNSEFFTSLLP*LSLESQWCLPGSQL Trigger: TAGTTGGCTTCCAGGCAGACACCACTGACTTTCAAGAGAAAGGCACGGGAGTAAGGAAGTAAAGAATTCAGAATTCACTATGGAGCTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669180.1 |
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| CDS CCA 90 bp | AAGAACTTGCCTAATTACACAGCTACCAGCATTAGTTCTAGAGGCTaGGAAGTCCAAGATCAATGCACTGGCATCTGGTGTCAAGTAAGA | + |
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Preference number: 5 (lower is better) Translates to: KNLPNYTATSISSRG*EVQDQCTGIWCQVR Trigger: TCTTACTTGACACCAGATGCCAGTGCATTGATCTTGGACTTCCCAGCCTCTAGAACTAATGCTGGTAGCTGTGTAATTAGGCAAGTTCTT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663157.1 |
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| CDS CCA 90 bp | TACATAATATGTACACTAGTCAGCCGCTATCCACTTCTTTTACATTaGAGCCCAGAGGAAAGCTCGACGTTTGCCCTGAATTCTTTACTT | + |
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Preference number: 5 (lower is better) Translates to: YIICTLVSRYPLLLH*SPEESSTFALNSLL Trigger: AAGTAAAGAATTCAGGGCAAACGTCGAGCTTTCCTCTGGGCTCCAATGTAAAAGAAGTGGATAGCGGCTGACTAGTGTACATATTATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000415532.2 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000668955.1 |
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| CDS TCA 90 bp | ATAATGGGATTGCTGGGTCAAATGGTATTTCCGCTTCTAGATCCTTaGGGAATCACCATACTGTCTTCCACAATGCTTTTAACTTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: IMGLLGQMVFPLLDP*GITILSSTMLLTSA Trigger: AGCAGAAGTTAAAAGCATTGTGGAAGACAGTATGGTGATTCCTCAAGGATCTAGAAGCGGAAATACCATTTGACCCAGCAATCCCATTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000648951.1 ENST00000657394.1 ENST00000662434.1 ENST00000665036.1 ENST00000669180.1 |
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| CDS TCA 90 bp | TATATTAGCTGCAGTGCTTTCTTTCAACAACACATAAAAGTATTCTaGAGACAGTTTGTTGTATTTTCAAGCAGCACCATCACCCACACA | + |
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Preference number: 5 (lower is better) Translates to: YISCSAFFQQHIKVF*RQFVVFSSSTITHT Trigger: TGTGTGGGTGATGGTGCTGCTTGAAAATACAACAAACTGTCTTCAGAATACTTTTATGTGTTGTTGAAAGAAAGCACTGCAGCTAATATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656484.1 |
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| CDS GCA 72 bp | ACCCGTAGTCTGTTCTTTGTCCCAGGGCTGTTTACCTaGTTCACAGATACCACAGGCAGAAATGCTGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: TRSLFFVPGLFT*FTDTTGRNAAV Trigger: GACAGCAGCATTTCTGCCTGTGGTATCTGTGAAGCAGGTAAACAGCCCTGGGACAAAGAACAGACTACGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000635702.1 ENST00000663157.1 ENST00000668955.1 |
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| CDS TCA 72 bp | TACATTGGAGCCCAGAGGAAAGCTCGACGTTTGCCCTaGATTCTTTACTTCCTTACTCCCGTGCCTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: YIGAQRKARRLP*ILYFLTPVPFS Trigger: AGAGAAAGGCACGGGAGTAAGGAAGTAAAGAATTCAGGGCAAACGTCGAGCTTTCCTCTGGGCTCCAATGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000415532.2 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000668955.1 |
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| CDS TCA 72 bp | TTTGGTGGTAAGTGGTCTTCAGTCACATTCTACGCCTaGGAAAATGGGCTCCATGAGGGTCCCAGTGATATC | + |
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Preference number: 6 (lower is better) Translates to: FGGKWSSVTFYA*ENGLHEGPSDI Trigger: GATATCACTGGGACCCTCATGGAGCCCATTTTCTCAGGCGTAGAATGTGACTGAAGACCACTTACCACCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656484.1 ENST00000660911.1 ENST00000666574.1 |
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| CDS GCA 72 bp | CCAGGGAGTTCTAGAGGCTGGGAAGTCCAAGATCAATaGACTGGCATCTGGTGTCAAGTAAGAGTCTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: PGSSRGWEVQDQ*TGIWCQVRVFS Trigger: AGAAAAGACTCTTACTTGACACCAGATGCCAGTGCATTGATCTTGGACTTCCCAGCCTCTAGAACTCCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655157.1 |
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| CDS CCA 72 bp | CATCCACACCAGGCTGAACTAAATAGTTCTAGAGGCTaGGAAGTCCAAGATCAATGCACTGGCATCTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: HPHQAELNSSRG*EVQDQCTGIWC Trigger: ACACCAGATGCCAGTGCATTGATCTTGGACTTCCCAGCCTCTAGAACTATTTAGTTCAGCCTGGTGTGGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000635702.1 ENST00000668955.1 |
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| CDS CAA 72 bp | ATGTACACTAGTCAGCCGCTATCCACTTCTTTTACATaGGAGCCCAGAGGAAAGCTCGACGTTTGCCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: MYTSQPLSTSFT*EPRGKLDVCPE Trigger: TTCAGGGCAAACGTCGAGCTTTCCTCTGGGCTCCAATGTAAAAGAAGTGGATAGCGGCTGACTAGTGTACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000415532.2 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000668955.1 |
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| CDS TCA 72 bp | GAGCGTGGCTTCCAGTCTAACAGCATCAGCATCACATaGGGACTTGTTATAAAGGCCAGTTTTTGTGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: ERGFQSNSISIT*GLVIKASFCAL Trigger: GAGAGCACAAAAACTGGCCTTTATAACAAGTCCTCATGTGATGCTGATGCTGTTAGACTGGAAGCCACGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000656484.1 ENST00000660911.1 ENST00000666574.1 |
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| CDS GCA 72 bp | TCTTTTACATTGGAGCCCAGAGGAAAGCTCGACGTTTaGCCTGAATTCTTTACTTCCTTACTCCCGTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: SFTLEPRGKLDV*PEFFTSLLPCL Trigger: AAGGCACGGGAGTAAGGAAGTAAAGAATTCAGGGCAAACGTCGAGCTTTCCTCTGGGCTCCAATGTAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000415532.2 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000668955.1 |
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| CDS CCA 72 bp | CCTAATTACACAGCTACCAGCATTAGTTCTAGAGGCTaGGAAGTCCAAGATCAATGCACTGGCATCTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: PNYTATSISSRG*EVQDQCTGIWC Trigger: ACACCAGATGCCAGTGCATTGATCTTGGACTTCCCAGCCTCTAGAACTAATGCTGGTAGCTGTGTAATTAGG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663157.1 |
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| CDS GCA 72 bp | GTTTACAGTTCTAGAGGCTGGGAAGTCCAAGATCAATaGACTGGCATCTGGTGTCAAGTAAGAGTCTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: VYSSRGWEVQDQ*TGIWCQVRVFS Trigger: AGAAAAGACTCTTACTTGACACCAGATGCCAGTGCATTGATCTTGGACTTCCCAGCCTCTAGAACTGTAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 10 transcripts: ENST00000415532.2 ENST00000648951.1 ENST00000656484.1 ENST00000657394.1 ENST00000660911.1 ENST00000662434.1 ENST00000664322.1 ENST00000665036.1 ENST00000666574.1 ENST00000669180.1 |
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| CDS GCA 72 bp | AGCATTAGTTCTAGAGGCTGGGAAGTCCAAGATCAATaGACTGGCATCTGGTGTCAAGTAAGAGTCTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SISSRGWEVQDQ*TGIWCQVRVFS Trigger: AGAAAAGACTCTTACTTGACACCAGATGCCAGTGCATTGATCTTGGACTTCCCAGCCTCTAGAACTAATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663157.1 |
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| CDS CCA 72 bp | AGAGGCTGGGAAGTCCAAGATCAATGCACTGGCATCTaGTGTCAAGTAAGAGTCTTTTCTCTGCTTTTAAGA | + |
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Preference number: 6 (lower is better) Translates to: RGWEVQDQCTGI*CQVRVFSLLLR Trigger: TCTTAAAAGCAGAGAAAAGACTCTTACTTGACACCAGATGCCAGTGCATTGATCTTGGACTTCCCAGCCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENST00000415532.2 ENST00000635702.1 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000657394.1 ENST00000660911.1 ENST00000662434.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000666574.1 ENST00000668955.1 ENST00000669180.1 |
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| CDS CAA 72 bp | TTGTTGATTAAGAAGGCAATACCCGTAGTCTGTTCTTaGTCCCAGGGCTGTTTACCTGCTTCACAGATACCA | + |
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Preference number: 6 (lower is better) Translates to: LLIKKAIPVVCS*SQGCLPASQIP Trigger: TGGTATCTGTGAAGCAGGTAAACAGCCCTGGGACAAAGAACAGACTACGGGTATTGCCTTCTTAATCAACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000635702.1 ENST00000663157.1 ENST00000668955.1 |
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| CDS CAA 72 bp | CTGATCTGTACTTCGACAGAGATCCCAATAATGGGATaGCTGGGTCAAATGGTATTTCCGCTTCTAGATCCT | + |
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Preference number: 6 (lower is better) Translates to: LICTSTEIPIMG*LGQMVFPLLDP Trigger: AGGATCTAGAAGCGGAAATACCATTTGACCCAGCAATCCCATTATTGGGATCTCTGTCGAAGTACAGATCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648951.1 ENST00000657394.1 |
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| CDS TCA 72 bp | AGTAAGAGTCTTTTCTCTGCTTTTAAGATGACGCCTTaGTGCTACATCCTCTGGATGGAACACTGTGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SKSLFSAFKMTP*CYILWMEHCVF Trigger: GAAGACACAGTGTTCCATCCAGAGGATGTAGCATCAAGGCGTCATCTTAAAAGCAGAGAAAAGACTCTTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 13 transcripts: ENST00000415532.2 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000657394.1 ENST00000660911.1 ENST00000662434.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000666574.1 ENST00000668955.1 ENST00000669180.1 |
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| CDS TCA 72 bp | TGGTGTCAAGTAAGAGTCTTTTCTCTGCTTTTAAGATaGCGCCTTGATGCTACATCCTCTGGATGGAACACT | + |
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Preference number: 6 (lower is better) Translates to: WCQVRVFSLLLR*RLDATSSGWNT Trigger: AGTGTTCCATCCAGAGGATGTAGCATCAAGGCGTCATCTTAAAAGCAGAGAAAAGACTCTTACTTGACACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENST00000415532.2 ENST00000635702.1 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000657394.1 ENST00000660911.1 ENST00000662434.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000666574.1 ENST00000668955.1 ENST00000669180.1 |
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| CDS GCA 72 bp | CTAAATAGTTCTAGAGGCTGGGAAGTCCAAGATCAATaGACTGGCATCTGGTGTCAAGTAAGAGTCTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: LNSSRGWEVQDQ*TGIWCQVRVFS Trigger: AGAAAAGACTCTTACTTGACACCAGATGCCAGTGCATTGATCTTGGACTTCCCAGCCTCTAGAACTATTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000635702.1 ENST00000668955.1 |
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| CDS GCA 72 bp | AGTCCAAACACCAGCTTAGCAAGTCTGGTTTCATCCTaGCTTAGTAAATTCAGTTCCCATTACTCTGTTCAC | + |
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Preference number: 6 (lower is better) Translates to: SPNTSLASLVSS*LSKFSSHYSVH Trigger: GTGAACAGAGTAATGGGAACTGAATTTACTAAGGCAGGATGAAACCAGACTTGCTAAGCTGGTGTTTGGACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648951.1 |
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| CDS CAA 90 bp | ATACATAATATGTACACTAGTCAGCCGCTATCCACTTCTTTTACATaGGAGCCCAGAGGAAAGCTCGACGTTTGCCCTGAATTCTTTACT | + |
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Preference number: 6 (lower is better) Translates to: IHNMYTSQPLSTSFT*EPRGKLDVCPEFFT Trigger: AGTAAAGAATTCAGGGCAAACGTCGAGCTTTCCTCTGGGCTCCAATGTAAAAGAAGTGGATAGCGGCTGACTAGTGTACATATTATGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000415532.2 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000668955.1 |
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| CDS CAA 90 bp | AATACTTTATTGTTGATTAAGAAGGCAATACCCGTAGTCTGTTCTTaGTCCCAGGGCTGTTTACCTGCTTCACAGATACCACAGGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: NTLLLIKKAIPVVCS*SQGCLPASQIPQAE Trigger: TTCTGCCTGTGGTATCTGTGAAGCAGGTAAACAGCCCTGGGACAAAGAACAGACTACGGGTATTGCCTTCTTAATCAACAATAAAGTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000635702.1 ENST00000663157.1 ENST00000668955.1 |
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| CDS TCA 72 bp | TTGCTGGGTCAAATGGTATTTCCGCTTCTAGATCCTTaGGGAATCACCATACTGTCTTCCACAATGCTTTTA | + |
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Preference number: 6 (lower is better) Translates to: LLGQMVFPLLDP*GITILSSTMLL Trigger: TAAAAGCATTGTGGAAGACAGTATGGTGATTCCTCAAGGATCTAGAAGCGGAAATACCATTTGACCCAGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000648951.1 ENST00000657394.1 ENST00000662434.1 ENST00000665036.1 ENST00000669180.1 |
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| CDS CAA 72 bp | GTGGTGTCTGCCTGGAAGCCAACTAATACTTTATTGTaGATTAAGAAGGCAATACCCGTAGTCTGTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: VVSAWKPTNTLL*IKKAIPVVCSL Trigger: CAAAGAACAGACTACGGGTATTGCCTTCTTAATCAACAATAAAGTATTAGTTGGCTTCCAGGCAGACACCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000415532.2 ENST00000635702.1 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000657394.1 ENST00000660911.1 ENST00000662434.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000666574.1 ENST00000668955.1 ENST00000669180.1 |
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| CDS CAA 72 bp | TCAGTGGTGTCTGCCTGGAAGCCAACTAATACTTTATaGTTGATTAAGAAGGCAATACCCGTAGTCTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: SVVSAWKPTNTL*LIKKAIPVVCS Trigger: AGAACAGACTACGGGTATTGCCTTCTTAATCAACAATAAAGTATTAGTTGGCTTCCAGGCAGACACCACTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000415532.2 ENST00000635702.1 ENST00000648951.1 ENST00000655157.1 ENST00000656484.1 ENST00000657394.1 ENST00000660911.1 ENST00000662434.1 ENST00000663157.1 ENST00000664322.1 ENST00000665036.1 ENST00000666574.1 ENST00000668955.1 ENST00000669180.1 |
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| CDS CAA 72 bp | ATTGCTGGGTCAAATGGTATTTCCGCTTCTAGATCCTaGAGGAATCACCATACTGTCTTCCACAATGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: IAGSNGISASRS*RNHHTVFHNAF Trigger: AAAAGCATTGTGGAAGACAGTATGGTGATTCCTCAAGGATCTAGAAGCGGAAATACCATTTGACCCAGCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000648951.1 ENST00000657394.1 ENST00000662434.1 ENST00000665036.1 ENST00000669180.1 |
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| CDS CAA 90 bp | AATAATGGGATTGCTGGGTCAAATGGTATTTCCGCTTCTAGATCCTaGAGGAATCACCATACTGTCTTCCACAATGCTTTTAACTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: NNGIAGSNGISASRS*RNHHTVFHNAFNFC Trigger: GCAGAAGTTAAAAGCATTGTGGAAGACAGTATGGTGATTCCTCAAGGATCTAGAAGCGGAAATACCATTTGACCCAGCAATCCCATTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000648951.1 ENST00000657394.1 ENST00000662434.1 ENST00000665036.1 ENST00000669180.1 |
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| CDS TCA 72 bp | GAGTTAGTTAATGCCAAAGTCTTGATTTCAATGCTTTaGGTCCAATCTGCTTCACATCCATTTATTTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: ELVNAKVLISML*VQSASHPFILA Trigger: AGCCAAAATAAATGGATGTGAAGCAGATTGGACTCAAAGCATTGAAATCAAGACTTTGGCATTAACTAACTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656484.1 ENST00000660911.1 ENST00000666574.1 |
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