Pregenerated sensors for LINC01708 (Homo sapiens)
Ensembl gene IDs: ENSG00000224445Ensembl transcript IDs: ENST00000438829.2, ENST00000634316.1, ENST00000635551.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCCAGGTGGAGGATGTGCTTGGAGGGGTCGACACTTGAGGAGTTGTaGAGACCTAGCTATCTTCATGGTAGCTTGATGGGACATCTATTG | + |
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Preference number: 5 (lower is better) Translates to: SRWRMCLEGSTLEEL*RPSYLHGSLMGHLL Trigger: CAATAGATGTCCCATCAAGCTACCATGAAGATAGCTAGGTCTGCACAACTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCACCTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000438829.2 ENST00000634316.1 ENST00000635551.1 |
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| CDS CCA 90 bp | ACACATTTATCCATTCAGTTCACAGTTCCAGGTGGAGGATGTGCTTaGAGGGGTCGACACTTGAGGAGTTGTGCAGACCTAGCTATCTTC | + |
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Preference number: 5 (lower is better) Translates to: THLSIQFTVPGGGCA*RGRHLRSCADLAIF Trigger: GAAGATAGCTAGGTCTGCACAACTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCACCTGGAACTGTGAACTGAATGGATAAATGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634316.1 ENST00000635551.1 |
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| CDS CCA 90 bp | ACCTTTCTGACCAACACATTTATCCATTCAGTTCACAGTTCCAGGTaGAGGATGTGCTTGGAGGGGTCGACACTTGAGGAGTTGTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: TFLTNTFIHSVHSSR*RMCLEGSTLEELCR Trigger: TCTGCACAACTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCACCTGGAACTGTGAACTGAATGGATAAATGTGTTGGTCAGAAAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000634316.1 |
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| CDS TCA 90 bp | TTCAGAGGAAGGAACACTGTTCTACAAGCATCTTCATATTCAAGCTaGAATTACATTCTCCAAAGCCACCCAATCCTGGTCTTACTTATT | + |
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Preference number: 5 (lower is better) Translates to: FRGRNTVLQASSYSS*NYILQSHPILVLLI Trigger: AATAAGTAAGACCAGGATTGGGTGGCTTTGGAGAATGTAATTTCAGCTTGAATATGAAGATGCTTGTAGAACAGTGTTCCTTCCTCTGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000438829.2 ENST00000634316.1 ENST00000635551.1 |
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| CDS TCA 90 bp | TTGGTAACCTCTGTTATCACAATATTTGGATCTATATTGCCAAAATaGAGACCCTTAGCAATCTTCAGTGGCTTGGGGGAGTTCAATTTA | + |
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Preference number: 5 (lower is better) Translates to: LVTSVITIFGSILPK*RPLAIFSGLGEFNL Trigger: TAAATTGAACTCCCCCAAGCCACTGAAGATTGCTAAGGGTCTTCATTTTGGCAATATAGATCCAAATATTGTGATAACAGAGGTTACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000635551.1 |
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| CDS CCA 72 bp | TCCATTCAGTTCACAGTTCCAGGTGGAGGATGTGCTTaGAGGGGTCGACACTTGAGGAGTTGTGCAGACCTA | + |
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Preference number: 6 (lower is better) Translates to: SIQFTVPGGGCA*RGRHLRSCADL Trigger: TAGGTCTGCACAACTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCACCTGGAACTGTGAACTGAATGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634316.1 ENST00000635551.1 |
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| CDS CAA 72 bp | GTTCCAGGTGGAGGATGTGCTTGGAGGGGTCGACACTaGAGGAGTTGTGCAGACCTAGCTATCTTCATGGTA | + |
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Preference number: 6 (lower is better) Translates to: VPGGGCAWRGRH*RSCADLAIFMV Trigger: TACCATGAAGATAGCTAGGTCTGCACAACTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCACCTGGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000438829.2 ENST00000634316.1 ENST00000635551.1 |
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| CDS CAA 72 bp | ATCCATTCAGTTCACAGTTCCAGGTGGAGGATGTGCTaGGAGGGGTCGACACTTGAGGAGTTGTGCAGACCT | + |
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Preference number: 6 (lower is better) Translates to: IHSVHSSRWRMC*EGSTLEELCRP Trigger: AGGTCTGCACAACTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCACCTGGAACTGTGAACTGAATGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634316.1 ENST00000635551.1 |
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| CDS CAA 90 bp | AGTTCCAGGTGGAGGATGTGCTTGGAGGGGTCGACACTTGAGGAGTaGTGCAGACCTAGCTATCTTCATGGTAGCTTGATGGGACATCTA | + |
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Preference number: 6 (lower is better) Translates to: SSRWRMCLEGSTLEE*CRPSYLHGSLMGHL Trigger: TAGATGTCCCATCAAGCTACCATGAAGATAGCTAGGTCTGCACAACTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCACCTGGAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000438829.2 ENST00000634316.1 ENST00000635551.1 |
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| CDS CAA 72 bp | TGGAGGATGTGCTTGGAGGGGTCGACACTTGAGGAGTaGTGCAGACCTAGCTATCTTCATGGTAGCTTGATG | + |
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Preference number: 6 (lower is better) Translates to: WRMCLEGSTLEE*CRPSYLHGSLM Trigger: CATCAAGCTACCATGAAGATAGCTAGGTCTGCACAACTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000438829.2 ENST00000634316.1 ENST00000635551.1 |
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| CDS CCA 72 bp | ACCAACACATTTATCCATTCAGTTCACAGTTCCAGGTaGAGGATGTGCTTGGAGGGGTCGACACTTGAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: TNTFIHSVHSSR*RMCLEGSTLEE Trigger: CTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCACCTGGAACTGTGAACTGAATGGATAAATGTGTTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634316.1 ENST00000635551.1 |
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| CDS CAA 90 bp | AACACATTTATCCATTCAGTTCACAGTTCCAGGTGGAGGATGTGCTaGGAGGGGTCGACACTTGAGGAGTTGTGCAGACCTAGCTATCTT | + |
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Preference number: 6 (lower is better) Translates to: NTFIHSVHSSRWRMC*EGSTLEELCRPSYL Trigger: AAGATAGCTAGGTCTGCACAACTCCTCAAGTGTCGACCCCTCCAAGCACATCCTCCACCTGGAACTGTGAACTGAATGGATAAATGTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634316.1 ENST00000635551.1 |
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| CDS TCA 72 bp | AGGAACACTGTTCTACAAGCATCTTCATATTCAAGCTaGAATTACATTCTCCAAAGCCACCCAATCCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: RNTVLQASSYSS*NYILQSHPILV Trigger: GACCAGGATTGGGTGGCTTTGGAGAATGTAATTTCAGCTTGAATATGAAGATGCTTGTAGAACAGTGTTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000438829.2 ENST00000634316.1 ENST00000635551.1 |
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| CDS CAA 90 bp | TCGACACTTGAGGAGTTGTGCAGACCTAGCTATCTTCATGGTAGCTaGATGGGACATCTATTGTTTATGTCAATAATTTATGAACCCAGT | + |
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Preference number: 6 (lower is better) Translates to: STLEELCRPSYLHGS*MGHLLFMSIIYEPS Trigger: ACTGGGTTCATAAATTATTGACATAAACAATAGATGTCCCATCAAGCTACCATGAAGATAGCTAGGTCTGCACAACTCCTCAAGTGTCGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000438829.2 ENST00000634316.1 ENST00000635551.1 |
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| CDS CAA 72 bp | GAGGAGTTGTGCAGACCTAGCTATCTTCATGGTAGCTaGATGGGACATCTATTGTTTATGTCAATAATTTAT | + |
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Preference number: 6 (lower is better) Translates to: EELCRPSYLHGS*MGHLLFMSIIY Trigger: ATAAATTATTGACATAAACAATAGATGTCCCATCAAGCTACCATGAAGATAGCTAGGTCTGCACAACTCCTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000438829.2 ENST00000634316.1 ENST00000635551.1 |
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