Pregenerated sensors for LINC01706 (Homo sapiens)
Ensembl gene IDs: ENSG00000224711Ensembl transcript IDs: ENST00000455299.1, ENST00000653032.1, ENST00000654533.1, ENST00000663217.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCTTGGCACACCAAAGGGATGCAAATACTGTGTCCAAGGGCGTCCTaGCAGGGTTGTGTGCGGGTCACCCTGACCCAGCCAGAAAGCTAC | + |
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Preference number: 5 (lower is better) Translates to: PWHTKGMQILCPRAS*QGCVRVTLTQPESY Trigger: GTAGCTTTCTGGCTGGGTCAGGGTGACCCGCACACAACCCTGGCAGGACGCCCTTGGACACAGTATTTGCATCCCTTTGGTGTGCCAAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS TCA 90 bp | TACTGTGTCCAAGGGCGTCCTGCCAGGGTTGTGTGCGGGTCACCCTaGCCCAGCCAGAAAGCTACAGATACCATGGCACATAACCTGGGT | + |
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Preference number: 5 (lower is better) Translates to: YCVQGRPARVVCGSP*PSQKATDTMAHNLG Trigger: ACCCAGGTTATGTGCCATGGTATCTGTAGCTTTCTGGCTGGGTCAGGGTGACCCGCACACAACCCTGGCAGGACGCCCTTGGACACAGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS TCA 90 bp | ATTTTAGGTCTGCCAAAGTCCACACCTTGTCCTAGAAGTCCATGCTaGAGGGGTCATGAGGTTGGACAAGGGAGGAGGCATGGAGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: ILGLPKSTPCPRSPC*RGHEVGQGRRHGEA Trigger: AGCCTCTCCATGCCTCCTCCCTTGTCCAACCTCATGACCCCTTCAGCATGGACTTCTAGGACAAGGTGTGGACTTTGGCAGACCTAAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS CCA 90 bp | TGTGCAGCATGTCCCAACAGCTCCCATCCAGTGCCGCAGCCACTTTaGAATGTAGCTGACCTCATGGAAATGGTTCTGTACCTACATGCT | + |
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Preference number: 5 (lower is better) Translates to: CAACPNSSHPVPQPL*NVADLMEMVLYLHA Trigger: AGCATGTAGGTACAGAACCATTTCCATGAGGTCAGCTACATTCCAAAGTGGCTGCGGCACTGGATGGGAGCTGTTGGGACATGCTGCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS TCA 90 bp | ATGGAGAGGCTGGCACAAATCCTGCACTCATGCAGGAAAACACTTTaGGTCACTTATGGCCAACGGGTCAGTGGCAGCATGTTGGAATCA | + |
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Preference number: 5 (lower is better) Translates to: MERLAQILHSCRKTL*VTYGQRVSGSMLES Trigger: TGATTCCAACATGCTGCCACTGACCCGTTGGCCATAAGTGACTCAAAGTGTTTTCCTGCATGAGTGCAGGATTTGTGCCAGCCTCTCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS CCA 90 bp | TTGTGTGCGGGTCACCCTGACCCAGCCAGAAAGCTACAGATACCATaGCACATAACCTGGGTCCTTATTGAAGGAGTAGTTTTAAGAAAT | + |
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Preference number: 5 (lower is better) Translates to: LCAGHPDPARKLQIP*HITWVLIEGVVLRN Trigger: ATTTCTTAAAACTACTCCTTCAATAAGGACCCAGGTTATGTGCCATGGTATCTGTAGCTTTCTGGCTGGGTCAGGGTGACCCGCACACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS CCA 90 bp | TCTTCGTTTAGTGGTTTCAATGTGAACTGTGAATGCTTGATACCTTaGCACACCAAAGGGATGCAAATACTGTGTCCAAGGGCGTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: SSFSGFNVNCECLIP*HTKGMQILCPRASC Trigger: GCAGGACGCCCTTGGACACAGTATTTGCATCCCTTTGGTGTGCCAAGGTATCAAGCATTCACAGTTCACATTGAAACCACTAAACGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS CCA 90 bp | AAACACTTTGAGTCACTTATGGCCAACGGGTCAGTGGCAGCATGTTaGAATCATAAAGAACACAACAGGAAGGTAGAAAGTGTGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: KHFESLMANGSVAAC*NHKEHNRKVESVGS Trigger: GGAGCCCACACTTTCTACCTTCCTGTTGTGTTCTTTATGATTCCAACATGCTGCCACTGACCCGTTGGCCATAAGTGACTCAAAGTGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS TCA 90 bp | AATCATAAAGAACACAACAGGAAGGTAGAAAGTGTGGGCTCCAGATaGAGACAGCCAACATTTCAATTCTGGCTCAACCACCTGGACAGT | + |
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Preference number: 5 (lower is better) Translates to: NHKEHNRKVESVGSR*RQPTFQFWLNHLDS Trigger: ACTGTCCAGGTGGTTGAGCCAGAATTGAAATGTTGGCTGTCTTCATCTGGAGCCCACACTTTCTACCTTCCTGTTGTGTTCTTTATGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS GCA 90 bp | TGTTTGCACAGCTCTTCGTTTAGTGGTTTCAATGTGAACTGTGAATaGTTGATACCTTGGCACACCAAAGGGATGCAAATACTGTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: CLHSSSFSGFNVNCE*LIPWHTKGMQILCP Trigger: TGGACACAGTATTTGCATCCCTTTGGTGTGCCAAGGTATCAAGCATTCACAGTTCACATTGAAACCACTAAACGAAGAGCTGTGCAAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS GCA 90 bp | TCCGAATGGCAAACGACTTCCTTAACTTTGATAAATGCATTCCTCTaGTGTAATGATGAGAGTCACATGCTCTGTTGGAAAAGATCTAGC | + |
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Preference number: 5 (lower is better) Translates to: SEWQTTSLTLINAFL*CNDESHMLCWKRSS Trigger: GCTAGATCTTTTCCAACAGAGCATGTGACTCTCATCATTACAGCAGAGGAATGCATTTATCAAAGTTAAGGAAGTCGTTTGCCATTCGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS TCA 90 bp | AGCTGCCTCCTGCATCAAATTCTTGGAGTAATTAGCATCTCAAAATaGAAGTTACCTTTGACCCTTCGTAACAGTTGTAAGATTATTCCC | + |
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Preference number: 5 (lower is better) Translates to: SCLLHQILGVISISK*KLPLTLRNSCKIIP Trigger: GGGAATAATCTTACAACTGTTACGAAGGGTCAAAGGTAACTTTCATTTTGAGATGCTAATTACTCCAAGAATTTGATGCAGGAGGCAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS TCA 90 bp | AGCCAGAAAGCTACAGATACCATGGCACATAACCTGGGTCCTTATTaGAGGAGTAGTTTTAAGAAATTAGCCAATCTTTTTATAATAGAG | + |
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Preference number: 5 (lower is better) Translates to: SQKATDTMAHNLGPY*RSSFKKLANLFIIE Trigger: CTCTATTATAAAAAGATTGGCTAATTTCTTAAAACTACTCCTTCAATAAGGACCCAGGTTATGTGCCATGGTATCTGTAGCTTTCTGGCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS GCA 90 bp | CTTTCCCTCTCTTTTGATCACTCATGTCACCTTTACATTTTGGCATaGAGTATATTTCTGTGTCTTGGCCTGATTCAACAAATATCTAAT | + |
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Preference number: 5 (lower is better) Translates to: LSLSFDHSCHLYILA*SIFLCLGLIQQISN Trigger: ATTAGATATTTGTTGAATCAGGCCAAGACACAGAAATATACTGCATGCCAAAATGTAAAGGTGACATGAGTGATCAAAAGAGAGGGAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663217.1 |
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| CDS GCA 72 bp | ACCAAAGGGATGCAAATACTGTGTCCAAGGGCGTCCTaGCAGGGTTGTGTGCGGGTCACCCTGACCCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: TKGMQILCPRAS*QGCVRVTLTQP Trigger: TGGCTGGGTCAGGGTGACCCGCACACAACCCTGGCAGGACGCCCTTGGACACAGTATTTGCATCCCTTTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS CAA 72 bp | GATGCAAATACTGTGTCCAAGGGCGTCCTGCCAGGGTaGTGTGCGGGTCACCCTGACCCAGCCAGAAAGCTA | + |
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Preference number: 6 (lower is better) Translates to: DANTVSKGVLPG*CAGHPDPARKL Trigger: TAGCTTTCTGGCTGGGTCAGGGTGACCCGCACACAACCCTGGCAGGACGCCCTTGGACACAGTATTTGCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS CAA 90 bp | CACCAAAGGGATGCAAATACTGTGTCCAAGGGCGTCCTGCCAGGGTaGTGTGCGGGTCACCCTGACCCAGCCAGAAAGCTACAGATACCA | + |
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Preference number: 6 (lower is better) Translates to: HQRDANTVSKGVLPG*CAGHPDPARKLQIP Trigger: TGGTATCTGTAGCTTTCTGGCTGGGTCAGGGTGACCCGCACACAACCCTGGCAGGACGCCCTTGGACACAGTATTTGCATCCCTTTGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS GCA 72 bp | ATGCATCCAGCCATCTTCAAAGACTGTCTTGGGCTGTaGAGCATGTCCCAACAGCTCCCATCCAGTGCCGCA | + |
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Preference number: 6 (lower is better) Translates to: MHPAIFKDCLGL*SMSQQLPSSAA Trigger: TGCGGCACTGGATGGGAGCTGTTGGGACATGCTGCACAGCCCAAGACAGTCTTTGAAGATGGCTGGATGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000455299.1 ENST00000663217.1 |
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| CDS CAA 90 bp | CATGGAGAGGCTGGCACAAATCCTGCACTCATGCAGGAAAACACTTaGAGTCACTTATGGCCAACGGGTCAGTGGCAGCATGTTGGAATC | + |
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Preference number: 6 (lower is better) Translates to: HGEAGTNPALMQENT*SHLWPTGQWQHVGI Trigger: GATTCCAACATGCTGCCACTGACCCGTTGGCCATAAGTGACTCAAAGTGTTTTCCTGCATGAGTGCAGGATTTGTGCCAGCCTCTCCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS TCA 72 bp | CTGGCACAAATCCTGCACTCATGCAGGAAAACACTTTaGGTCACTTATGGCCAACGGGTCAGTGGCAGCATG | + |
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Preference number: 6 (lower is better) Translates to: LAQILHSCRKTL*VTYGQRVSGSM Trigger: CATGCTGCCACTGACCCGTTGGCCATAAGTGACTCAAAGTGTTTTCCTGCATGAGTGCAGGATTTGTGCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS CAA 72 bp | GCTGGCACAAATCCTGCACTCATGCAGGAAAACACTTaGAGTCACTTATGGCCAACGGGTCAGTGGCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: AGTNPALMQENT*SHLWPTGQWQH Trigger: ATGCTGCCACTGACCCGTTGGCCATAAGTGACTCAAAGTGTTTTCCTGCATGAGTGCAGGATTTGTGCCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS GCA 72 bp | ACAAGGGAGGAGGCATGGAGAGGCTGGCACAAATCCTaGACTCATGCAGGAAAACACTTTGAGTCACTTATG | + |
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Preference number: 6 (lower is better) Translates to: TREEAWRGWHKS*THAGKHFESLM Trigger: CATAAGTGACTCAAAGTGTTTTCCTGCATGAGTGCAGGATTTGTGCCAGCCTCTCCATGCCTCCTCCCTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS CCA 72 bp | GGTCACCCTGACCCAGCCAGAAAGCTACAGATACCATaGCACATAACCTGGGTCCTTATTGAAGGAGTAGTT | + |
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Preference number: 6 (lower is better) Translates to: GHPDPARKLQIP*HITWVLIEGVV Trigger: AACTACTCCTTCAATAAGGACCCAGGTTATGTGCCATGGTATCTGTAGCTTTCTGGCTGGGTCAGGGTGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS CCA 72 bp | CCTGCACTCATGCAGGAAAACACTTTGAGTCACTTATaGCCAACGGGTCAGTGGCAGCATGTTGGAATCATA | + |
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Preference number: 6 (lower is better) Translates to: PALMQENTLSHL*PTGQWQHVGII Trigger: TATGATTCCAACATGCTGCCACTGACCCGTTGGCCATAAGTGACTCAAAGTGTTTTCCTGCATGAGTGCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS TCA 72 bp | GAACACAACAGGAAGGTAGAAAGTGTGGGCTCCAGATaGAGACAGCCAACATTTCAATTCTGGCTCAACCAC | + |
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Preference number: 6 (lower is better) Translates to: EHNRKVESVGSR*RQPTFQFWLNH Trigger: GTGGTTGAGCCAGAATTGAAATGTTGGCTGTCTTCATCTGGAGCCCACACTTTCTACCTTCCTGTTGTGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS CCA 72 bp | GAGTCACTTATGGCCAACGGGTCAGTGGCAGCATGTTaGAATCATAAAGAACACAACAGGAAGGTAGAAAGT | + |
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Preference number: 6 (lower is better) Translates to: ESLMANGSVAAC*NHKEHNRKVES Trigger: ACTTTCTACCTTCCTGTTGTGTTCTTTATGATTCCAACATGCTGCCACTGACCCGTTGGCCATAAGTGACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS CAA 90 bp | TTGCACAGCTCTTCGTTTAGTGGTTTCAATGTGAACTGTGAATGCTaGATACCTTGGCACACCAAAGGGATGCAAATACTGTGTCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: LHSSSFSGFNVNCEC*IPWHTKGMQILCPR Trigger: CCTTGGACACAGTATTTGCATCCCTTTGGTGTGCCAAGGTATCAAGCATTCACAGTTCACATTGAAACCACTAAACGAAGAGCTGTGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS CCA 72 bp | AGTGGTTTCAATGTGAACTGTGAATGCTTGATACCTTaGCACACCAAAGGGATGCAAATACTGTGTCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: SGFNVNCECLIP*HTKGMQILCPR Trigger: CCTTGGACACAGTATTTGCATCCCTTTGGTGTGCCAAGGTATCAAGCATTCACAGTTCACATTGAAACCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS CCA 72 bp | GAAAACACTTTGAGTCACTTATGGCCAACGGGTCAGTaGCAGCATGTTGGAATCATAAAGAACACAACAGGA | + |
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Preference number: 6 (lower is better) Translates to: ENTLSHLWPTGQ*QHVGIIKNTTG Trigger: TCCTGTTGTGTTCTTTATGATTCCAACATGCTGCCACTGACCCGTTGGCCATAAGTGACTCAAAGTGTTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654533.1 |
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| CDS CAA 90 bp | ACCTCATGGAAATGGTTCTGTACCTACATGCTGAGAGTTTCTCCCTaGACCTTTCACTTTCCCTCTCTTTTGATCACTCATGTCACCTTT | + |
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Preference number: 6 (lower is better) Translates to: TSWKWFCTYMLRVSP*TFHFPSLLITHVTF Trigger: AAAGGTGACATGAGTGATCAAAAGAGAGGGAAAGTGAAAGGTCAAGGGAGAAACTCTCAGCATGTAGGTACAGAACCATTTCCATGAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS TCA 72 bp | TGCACTTATTCTGCAATGCACTCACTTTGGCTGAGGTaGAGTCCTTTTCCAGTTAGTCTGTGGATGTTTTAC | + |
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Preference number: 6 (lower is better) Translates to: CTYSAMHSLWLR*SPFPVSLWMFY Trigger: GTAAAACATCCACAGACTAACTGGAAAAGGACTTCACCTCAGCCAAAGTGAGTGCATTGCAGAATAAGTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455299.1 |
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| CDS GCA 72 bp | TTAGTCTGTGGATGTTTTACGTATATGACAAGGTCATaGATCCAGCCATCTTCAAAGACTGTCTTGGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: LVCGCFTYMTRS*IQPSSKTVLGC Trigger: ACAGCCCAAGACAGTCTTTGAAGATGGCTGGATGCATGACCTTGTCATATACGTAAAACATCCACAGACTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000455299.1 ENST00000663217.1 |
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| CDS CAA 72 bp | CTTGGGCCATCCGAATGGCAAACGACTTCCTTAACTTaGATAAATGCATTCCTCTGCTGTAATGATGAGAGT | + |
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Preference number: 6 (lower is better) Translates to: LGPSEWQTTSLT*INAFLCCNDES Trigger: ACTCTCATCATTACAGCAGAGGAATGCATTTATCAAAGTTAAGGAAGTCGTTTGCCATTCGGATGGCCCAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS TCA 72 bp | GAAGGCCCTGTCTCAAGACATAGGAGCACATTGCAATaGGATCCCCAATTAAAACGGATTGCAATATCTTTA | + |
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Preference number: 6 (lower is better) Translates to: EGPVSRHRSTLQ*DPQLKRIAISL Trigger: TAAAGATATTGCAATCCGTTTTAATTGGGGATCTCATTGCAATGTGCTCCTATGTCTTGAGACAGGGCCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455299.1 |
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| CDS GCA 72 bp | TCTTTAAAAACCAAGGTAAGCTCTCTGCACTTATTCTaGAATGCACTCACTTTGGCTGAGGTGAAGTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: SLKTKVSSLHLF*NALTLAEVKSF Trigger: AAAGGACTTCACCTCAGCCAAAGTGAGTGCATTGCAGAATAAGTGCAGAGAGCTTACCTTGGTTTTTAAAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000455299.1 |
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| CDS CAA 72 bp | TCTTCGTTTAGTGGTTTCAATGTGAACTGTGAATGCTaGATACCTTGGCACACCAAAGGGATGCAAATACTG | + |
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Preference number: 6 (lower is better) Translates to: SSFSGFNVNCEC*IPWHTKGMQIL Trigger: CAGTATTTGCATCCCTTTGGTGTGCCAAGGTATCAAGCATTCACAGTTCACATTGAAACCACTAAACGAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS GCA 72 bp | CAAACGACTTCCTTAACTTTGATAAATGCATTCCTCTaGTGTAATGATGAGAGTCACATGCTCTGTTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: QTTSLTLINAFL*CNDESHMLCWK Trigger: TTTCCAACAGAGCATGTGACTCTCATCATTACAGCAGAGGAATGCATTTATCAAAGTTAAGGAAGTCGTTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS CCA 72 bp | TTCTCACAAGGCTCAATGATAAATATTTATGCTTCTTaGGCCATCCGAATGGCAAACGACTTCCTTAACTTT | + |
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Preference number: 6 (lower is better) Translates to: FSQGSMINIYAS*AIRMANDFLNF Trigger: AAAGTTAAGGAAGTCGTTTGCCATTCGGATGGCCCAAGAAGCATAAATATTTATCATTGAGCCTTGTGAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS TCA 72 bp | GCTACAGATACCATGGCACATAACCTGGGTCCTTATTaGAGGAGTAGTTTTAAGAAATTAGCCAATCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: ATDTMAHNLGPY*RSSFKKLANLF Trigger: AAAAAGATTGGCTAATTTCTTAAAACTACTCCTTCAATAAGGACCCAGGTTATGTGCCATGGTATCTGTAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000455299.1 ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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| CDS GCA 72 bp | TCTTTTGATCACTCATGTCACCTTTACATTTTGGCATaGAGTATATTTCTGTGTCTTGGCCTGATTCAACAA | + |
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Preference number: 6 (lower is better) Translates to: SFDHSCHLYILA*SIFLCLGLIQQ Trigger: TTGTTGAATCAGGCCAAGACACAGAAATATACTGCATGCCAAAATGTAAAGGTGACATGAGTGATCAAAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663217.1 |
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| CDS TCA 72 bp | CTGCATCAAATTCTTGGAGTAATTAGCATCTCAAAATaGAAGTTACCTTTGACCCTTCGTAACAGTTGTAAG | + |
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Preference number: 6 (lower is better) Translates to: LHQILGVISISK*KLPLTLRNSCK Trigger: CTTACAACTGTTACGAAGGGTCAAAGGTAACTTTCATTTTGAGATGCTAATTACTCCAAGAATTTGATGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653032.1 ENST00000654533.1 ENST00000663217.1 |
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