Pregenerated sensors for LINC01701 (Homo sapiens)

Ensembl gene IDs: ENSG00000232212

Ensembl transcript IDs: ENST00000419614.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AAGGAAGCTGTTCTCCATTCCCCTAAGGTGAGAGGTACAAGCTTCTaGATACAGGTAGTAGGGCATCCCACCTTAATTCAGGCTGCAAAA	+
Preference number: 5 (lower is better) Translates to: KEAVLHSPKVRGTSF*IQVVGHPTLIQAAK Trigger: TTTTGCAGCCTGAATTAAGGTGGGATGCCCTACTACCTGTATCCAGAAGCTTGTACCTCTCACCTTAGGGGAATGGAGAACAGCTTCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419614.1
CDS GCA 90 bp	AATGATGAGTCTATAAAGAGGTTATTTTCTGAATGCAGTTGGCTGTaGATAACTGTAACCATGGAAAATGAAACCACCATGGACAAGGGG	+
Preference number: 5 (lower is better) Translates to: NDESIKRLFSECSWL*ITVTMENETTMDKG Trigger: CCCCTTGTCCATGGTGGTTTCATTTTCCATGGTTACAGTTATGCACAGCCAACTGCATTCAGAAAATAACCTCTTTATAGACTCATCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419614.1
CDS CCA 72 bp	GTTCTCCATTCCCCTAAGGTGAGAGGTACAAGCTTCTaGATACAGGTAGTAGGGCATCCCACCTTAATTCAG	+
Preference number: 6 (lower is better) Translates to: VLHSPKVRGTSF*IQVVGHPTLIQ Trigger: CTGAATTAAGGTGGGATGCCCTACTACCTGTATCCAGAAGCTTGTACCTCTCACCTTAGGGGAATGGAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419614.1
CDS TCA 72 bp	ATGCAGTTGGCTGTGCATAACTGTAACCATGGAAAATaGAACCACCATGGACAAGGGGGCACTACTGTACTC	+
Preference number: 6 (lower is better) Translates to: MQLAVHNCNHGK*NHHGQGGTTVL Trigger: GAGTACAGTAGTGCCCCCTTGTCCATGGTGGTTTCATTTTCCATGGTTACAGTTATGCACAGCCAACTGCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000419614.1
CDS CCA 72 bp	GATGAGTCTATAAAGAGGTTATTTTCTGAATGCAGTTaGCTGTGCATAACTGTAACCATGGAAAATGAAACC	+
Preference number: 6 (lower is better) Translates to: DESIKRLFSECS*LCITVTMENET Trigger: GGTTTCATTTTCCATGGTTACAGTTATGCACAGCCAACTGCATTCAGAAAATAACCTCTTTATAGACTCATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419614.1
CDS GCA 72 bp	CTCAATGATGAGTCTATAAAGAGGTTATTTTCTGAATaGAGTTGGCTGTGCATAACTGTAACCATGGAAAAT	+
Preference number: 6 (lower is better) Translates to: LNDESIKRLFSE*SWLCITVTMEN Trigger: ATTTTCCATGGTTACAGTTATGCACAGCCAACTGCATTCAGAAAATAACCTCTTTATAGACTCATCATTGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419614.1

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