Pregenerated sensors for LINC01696 (Homo sapiens)
Ensembl gene IDs: ENSG00000227940Ensembl transcript IDs: ENST00000448988.2, ENST00000658311.1, ENST00000665245.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATTGCTGATATGCCCAGCCCACAGGGGCGTGGCAGGGGAGGCGAGTaGCAGGAACCAAGCCTTCTTGGGAGTGCCATGGGTTCTTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: IADMPSPQGRGRGGE*QEPSLLGSAMGSSA Trigger: GGCAGAAGAACCCATGGCACTCCCAAGAAGGCTTGGTTCCTGCCACTCGCCTCCCCTGCCACGCCCCTGTGGGCTGGGCATATCAGCAAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS GCA 90 bp | ACCGACTGTGAGCTTGCTCTTGTTGTGGAATTAGCTCTTGCTCCCTaGCTTTTGGCAGCTCTTGCAGCAGCCGTGCTTCCTCTCCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: TDCELALVVELALAP*LLAALAAAVLPLPV Trigger: CACAGGGAGAGGAAGCACGGCTGCTGCAAGAGCTGCCAAAAGGCAGGGAGCAAGAGCTAATTCCACAACAAGAGCAAGCTCACAGTCGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS CCA 90 bp | CCTGCCTTTTGGCAGCTCTTGCAGCAGCCGTGCTTCCTCTCCCTGTaGTCGCAGAAGGAGCAGGAAGGCAATGTGCAGAACATATGTCTT | + |
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Preference number: 5 (lower is better) Translates to: PAFWQLLQQPCFLSL*SQKEQEGNVQNICL Trigger: AAGACATATGTTCTGCACATTGCCTTCCTGCTCCTTCTGCGACCACAGGGAGAGGAAGCACGGCTGCTGCAAGAGCTGCCAAAAGGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000658311.1 ENST00000665245.1 |
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| CDS CCA 90 bp | TCTGATGTCTTGCGGGGTGCAGATGACAGTCAAGTCTTCCTCAAGTaGGCAGAGTGTTTCAGGTTGACCGCCATATTTACTGAACTGCTG | + |
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Preference number: 5 (lower is better) Translates to: SDVLRGADDSQVFLK*AECFRLTAIFTELL Trigger: CAGCAGTTCAGTAAATATGGCGGTCAACCTGAAACACTCTGCCCACTTGAGGAAGACTTGACTGTCATCTGCACCCCGCAAGACATCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448988.2 |
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| CDS TCA 90 bp | CTTCCTCAAGTGGGCAGAGTGTTTCAGGTTGACCGCCATATTTACTaGACTGCTGAACCACTTGCTCCTCACTTCTCTGTCAATGGTGTG | + |
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Preference number: 5 (lower is better) Translates to: LPQVGRVFQVDRHIY*TAEPLAPHFSVNGV Trigger: CACACCATTGACAGAGAAGTGAGGAGCAAGTGGTTCAGCAGTTCAGTAAATATGGCGGTCAACCTGAAACACTCTGCCCACTTGAGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS TCA 90 bp | GCTCCTCACTTCTCTGTCAATGGTGTGCTGGCTGGAATGCAACAATaGCAAGCTCAAAAGTCAGTTCATCACCCGGACAGTTGCATGCAT | + |
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Preference number: 5 (lower is better) Translates to: APHFSVNGVLAGMQQ*QAQKSVHHPDSCMH Trigger: ATGCATGCAACTGTCCGGGTGATGAACTGACTTTTGAGCTTGTCATTGTTGCATTCCAGCCAGCACACCATTGACAGAGAAGTGAGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS CCA 90 bp | GAACTGCTGAACCACTTGCTCCTCACTTCTCTGTCAATGGTGTGCTaGCTGGAATGCAACAATGACAAGCTCAAAAGTCAGTTCATCACC | + |
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Preference number: 5 (lower is better) Translates to: ELLNHLLLTSLSMVC*LECNNDKLKSQFIT Trigger: GGTGATGAACTGACTTTTGAGCTTGTCATTGTTGCATTCCAGCCAGCACACCATTGACAGAGAAGTGAGGAGCAAGTGGTTCAGCAGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS GCA 90 bp | ACTGAACTGCTGAACCACTTGCTCCTCACTTCTCTGTCAATGGTGTaGTGGCTGGAATGCAACAATGACAAGCTCAAAAGTCAGTTCATC | + |
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Preference number: 5 (lower is better) Translates to: TELLNHLLLTSLSMV*WLECNNDKLKSQFI Trigger: GATGAACTGACTTTTGAGCTTGTCATTGTTGCATTCCAGCCAGCACACCATTGACAGAGAAGTGAGGAGCAAGTGGTTCAGCAGTTCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS CCA 72 bp | TGGCAGGGGAGGCGAGTGGCAGGAACCAAGCCTTCTTaGGAGTGCCATGGGTTCTTCTGCCTGCCAATTGCG | + |
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Preference number: 6 (lower is better) Translates to: WQGRRVAGTKPS*ECHGFFCLPIA Trigger: CGCAATTGGCAGGCAGAAGAACCCATGGCACTCCCAAGAAGGCTTGGTTCCTGCCACTCGCCTCCCCTGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS CAA 72 bp | GTGGCAGGGGAGGCGAGTGGCAGGAACCAAGCCTTCTaGGGAGTGCCATGGGTTCTTCTGCCTGCCAATTGC | + |
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Preference number: 6 (lower is better) Translates to: VAGEASGRNQAF*GVPWVLLPANC Trigger: GCAATTGGCAGGCAGAAGAACCCATGGCACTCCCAAGAAGGCTTGGTTCCTGCCACTCGCCTCCCCTGCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS GCA 72 bp | TTGCTCCCTGCCTTTTGGCAGCTCTTGCAGCAGCCGTaGTTCCTCTCCCTGTGGTCGCAGAAGGAGCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: LLPAFWQLLQQP*FLSLWSQKEQE Trigger: TTCCTGCTCCTTCTGCGACCACAGGGAGAGGAAGCACGGCTGCTGCAAGAGCTGCCAAAAGGCAGGGAGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS GCA 72 bp | GGAATTAGCTCTTGCTCCCTGCCTTTTGGCAGCTCTTaGAGCAGCCGTGCTTCCTCTCCCTGTGGTCGCAGA | + |
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Preference number: 6 (lower is better) Translates to: GISSCSLPFGSS*SSRASSPCGRR Trigger: TCTGCGACCACAGGGAGAGGAAGCACGGCTGCTGCAAGAGCTGCCAAAAGGCAGGGAGCAAGAGCTAATTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS CAA 90 bp | TGTGAGCTTGCTCTTGTTGTGGAATTAGCTCTTGCTCCCTGCCTTTaGGCAGCTCTTGCAGCAGCCGTGCTTCCTCTCCCTGTGGTCGCA | + |
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Preference number: 6 (lower is better) Translates to: CELALVVELALAPCL*AALAAAVLPLPVVA Trigger: TGCGACCACAGGGAGAGGAAGCACGGCTGCTGCAAGAGCTGCCAAAAGGCAGGGAGCAAGAGCTAATTCCACAACAAGAGCAAGCTCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS GCA 72 bp | GAGCTTGCTCTTGTTGTGGAATTAGCTCTTGCTCCCTaGCTTTTGGCAGCTCTTGCAGCAGCCGTGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: ELALVVELALAP*LLAALAAAVLP Trigger: AGGAAGCACGGCTGCTGCAAGAGCTGCCAAAAGGCAGGGAGCAAGAGCTAATTCCACAACAAGAGCAAGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS CCA 72 bp | CATCTAGATGACAGACCGCATTTTTCACTGCCCAGCTaGACTTCTGCATGTCACATAAAGAGGGGCCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: HLDDRPHFSLPS*TSACHIKRGLG Trigger: CCCAAGGCCCCTCTTTATGTGACATGCAGAAGTCCAGCTGGGCAGTGAAAAATGCGGTCTGTCATCTAGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS TCA 72 bp | GTGGGCAGAGTGTTTCAGGTTGACCGCCATATTTACTaGACTGCTGAACCACTTGCTCCTCACTTCTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: VGRVFQVDRHIY*TAEPLAPHFSV Trigger: GACAGAGAAGTGAGGAGCAAGTGGTTCAGCAGTTCAGTAAATATGGCGGTCAACCTGAAACACTCTGCCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS TCA 72 bp | GGCAATGTGCAGAACATATGTCTTGCGGGGTGCAGATaGCAGTCAAGTCTTCCTCAAGTGGGCAGAGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: GNVQNICLAGCR*QSSLPQVGRVF Trigger: AAACACTCTGCCCACTTGAGGAAGACTTGACTGTCATCTGCACCCCGCAAGACATATGTTCTGCACATTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000658311.1 ENST00000665245.1 |
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| CDS CCA 72 bp | TTGCGGGGTGCAGATGACAGTCAAGTCTTCCTCAAGTaGGCAGAGTGTTTCAGGTTGACCGCCATATTTACT | + |
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Preference number: 6 (lower is better) Translates to: LRGADDSQVFLK*AECFRLTAIFT Trigger: AGTAAATATGGCGGTCAACCTGAAACACTCTGCCCACTTGAGGAAGACTTGACTGTCATCTGCACCCCGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS CAA 72 bp | AGGTTGACCGCCATATTTACTGAACTGCTGAACCACTaGCTCCTCACTTCTCTGTCAATGGTGTGCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RLTAIFTELLNH*LLTSLSMVCWL Trigger: CAGCCAGCACACCATTGACAGAGAAGTGAGGAGCAAGTGGTTCAGCAGTTCAGTAAATATGGCGGTCAACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS CAA 90 bp | GAGTGTTTCAGGTTGACCGCCATATTTACTGAACTGCTGAACCACTaGCTCCTCACTTCTCTGTCAATGGTGTGCTGGCTGATGGCGTAT | + |
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Preference number: 6 (lower is better) Translates to: ECFRLTAIFTELLNH*LLTSLSMVCWLMAY Trigger: ATACGCCATCAGCCAGCACACCATTGACAGAGAAGTGAGGAGCAAGTGGTTCAGCAGTTCAGTAAATATGGCGGTCAACCTGAAACACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000448988.2 ENST00000658311.1 |
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| CDS CAA 90 bp | GCAGATGACAGTCAAGTCTTCCTCAAGTGGGCAGAGTGTTTCAGGTaGACCGCCATATTTACTGAACTGCTGAACCACTTGCTCCTCACT | + |
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Preference number: 6 (lower is better) Translates to: ADDSQVFLKWAECFR*TAIFTELLNHLLLT Trigger: AGTGAGGAGCAAGTGGTTCAGCAGTTCAGTAAATATGGCGGTCAACCTGAAACACTCTGCCCACTTGAGGAAGACTTGACTGTCATCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000448988.2 ENST00000658311.1 ENST00000665245.1 |
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| CDS CAA 90 bp | GAGTGTTTCAGGTTGACCGCCATATTTACTGAACTGCTGAACCACTaGCTCCTCACTTCTCTGTCAATGGTGTGCTGGCTGGAATGCAAC | + |
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Preference number: 6 (lower is better) Translates to: ECFRLTAIFTELLNH*LLTSLSMVCWLECN Trigger: GTTGCATTCCAGCCAGCACACCATTGACAGAGAAGTGAGGAGCAAGTGGTTCAGCAGTTCAGTAAATATGGCGGTCAACCTGAAACACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS TCA 72 bp | ATGTCACATAAAGAGGGGCCTTGGGGACTTGCAAGATaGCAATCTATGCTATTGCTGATATGCCCAGCCCAC | + |
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Preference number: 6 (lower is better) Translates to: MSHKEGPWGLAR*QSMLLLICPAH Trigger: GTGGGCTGGGCATATCAGCAATAGCATAGATTGTCATCTTGCAAGTCCCCAAGGCCCCTCTTTATGTGACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS TCA 72 bp | TTCTCTGTCAATGGTGTGCTGGCTGGAATGCAACAATaGCAAGCTCAAAAGTCAGTTCATCACCCGGACAGT | + |
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Preference number: 6 (lower is better) Translates to: FSVNGVLAGMQQ*QAQKSVHHPDS Trigger: ACTGTCCGGGTGATGAACTGACTTTTGAGCTTGTCATTGTTGCATTCCAGCCAGCACACCATTGACAGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS GCA 72 bp | CTGAACCACTTGCTCCTCACTTCTCTGTCAATGGTGTaGTGGCTGGAATGCAACAATGACAAGCTCAAAAGT | + |
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Preference number: 6 (lower is better) Translates to: LNHLLLTSLSMV*WLECNNDKLKS Trigger: ACTTTTGAGCTTGTCATTGTTGCATTCCAGCCAGCACACCATTGACAGAGAAGTGAGGAGCAAGTGGTTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS CCA 72 bp | AACCACTTGCTCCTCACTTCTCTGTCAATGGTGTGCTaGCTGGAATGCAACAATGACAAGCTCAAAAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: NHLLLTSLSMVC*LECNNDKLKSQ Trigger: CTGACTTTTGAGCTTGTCATTGTTGCATTCCAGCCAGCACACCATTGACAGAGAAGTGAGGAGCAAGTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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| CDS CCA 72 bp | ACTTGCTCCTCACTTCTCTGTCAATGGTGTGCTGGCTaGAATGCAACAATGACAAGCTCAAAAGTCAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: TCSSLLCQWCAG*NATMTSSKVSS Trigger: TGAACTGACTTTTGAGCTTGTCATTGTTGCATTCCAGCCAGCACACCATTGACAGAGAAGTGAGGAGCAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665245.1 |
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