Pregenerated sensors for LINC01683 (Homo sapiens)
Ensembl gene IDs: ENSG00000233480Ensembl transcript IDs: ENST00000443479.1, ENST00000652251.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCATTAAGAGGGGTTGAGTCAAGATGGCGGCCTGGAAGTAGCTCCTaGGCGCTGCTCTCACAGGGAGGAGACAAAGGGCTGGTGAACACT | + |
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Preference number: 5 (lower is better) Translates to: SLRGVESRWRPGSSS*ALLSQGGDKGLVNT Trigger: AGTGTTCACCAGCCCTTTGTCTCCTCCCTGTGAGAGCAGCGCGCAGGAGCTACTTCCAGGCCGCCATCTTGACTCAACCCCTCTTAATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS TCA 90 bp | CTGTCTTTCTCTTTCATGAACTCCATTCAAACATATGCATGTTGCTaGGATATAGTATGGTGCTTAATATCGCTTTATGAACACTCCGAC | + |
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Preference number: 5 (lower is better) Translates to: LSFSFMNSIQTYACC*DIVWCLISLYEHSD Trigger: GTCGGAGTGTTCATAAAGCGATATTAAGCACCATACTATATCTCAGCAACATGCATATGTTTGAATGGAGTTCATGAAAGAGAAAGACAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS GCA 72 bp | GGGGTTGAGTCAAGATGGCGGCCTGGAAGTAGCTCCTaGGCGCTGCTCTCACAGGGAGGAGACAAAGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GVESRWRPGSSS*ALLSQGGDKGL Trigger: CAGCCCTTTGTCTCCTCCCTGTGAGAGCAGCGCGCAGGAGCTACTTCCAGGCCGCCATCTTGACTCAACCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS CCA 72 bp | AGAACAGAGAGGAGTGCAGCTGGGCAGCAGCCTGTCTaGGATAAACGCGGAGCCAGGAGAAGCTCCCCAACA | + |
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Preference number: 6 (lower is better) Translates to: RTERSAAGQQPV*DKRGARRSSPT Trigger: TGTTGGGGAGCTTCTCCTGGCTCCGCGTTTATCCCAGACAGGCTGCTGCCCAGCTGCACTCCTCTCTGTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS CCA 72 bp | GAGACACAGGAATCATTAAGAGGGGTTGAGTCAAGATaGCGGCCTGGAAGTAGCTCCTGCGCGCTGCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: ETQESLRGVESR*RPGSSSCALLS Trigger: TGAGAGCAGCGCGCAGGAGCTACTTCCAGGCCGCCATCTTGACTCAACCCCTCTTAATGATTCCTGTGTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS TCA 72 bp | GCTCTCACAGGGAGGAGACAAAGGGCTGGTGAACACTaGCCCTACAAGCTGATATCTAAGAAACCGTGTCGG | + |
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Preference number: 6 (lower is better) Translates to: ALTGRRQRAGEH*PYKLISKKPCR Trigger: CCGACACGGTTTCTTAGATATCAGCTTGTAGGGTCAGTGTTCACCAGCCCTTTGTCTCCTCCCTGTGAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS CCA 72 bp | TTTCAGAAAAATTCTACCTCTGAAGGGAGTGGAGGTTaGAGAGTGAAGAGGTTGAAGTCTTCCCAAGTTCAG | + |
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Preference number: 6 (lower is better) Translates to: FQKNSTSEGSGG*RVKRLKSSQVQ Trigger: CTGAACTTGGGAAGACTTCAACCTCTTCACTCTCCAACCTCCACTCCCTTCAGAGGTAGAATTTTTCTGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS CAA 72 bp | ATACATGCGCCATGTTGGTGTGCTGCACCCATTAACTaGTCATTTACATTAGGTATGTCTCCTAATGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: IHAPCWCAAPIN*SFTLGMSPNAG Trigger: TCCAGCATTAGGAGACATACCTAATGTAAATGACAAGTTAATGGGTGCAGCACACCAACATGGCGCATGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS CAA 90 bp | TACATATGTATACATGCGCCATGTTGGTGTGCTGCACCCATTAACTaGTCATTTACATTAGGTATGTCTCCTAATGCTGGACATGTACTT | + |
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Preference number: 6 (lower is better) Translates to: YICIHAPCWCAAPIN*SFTLGMSPNAGHVL Trigger: AAGTACATGTCCAGCATTAGGAGACATACCTAATGTAAATGACAAGTTAATGGGTGCAGCACACCAACATGGCGCATGTATACATATGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS GCA 72 bp | CTCCGACTGAGTGGAATATGTCTATATTCTTATAACTaGTTCAGTTCTAAAAGCCGGAGACACAGGAATCAT | + |
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Preference number: 6 (lower is better) Translates to: LRLSGICLYSYN*FSSKSRRHRNH Trigger: ATGATTCCTGTGTCTCCGGCTTTTAGAACTGAAGCAGTTATAAGAATATAGACATATTCCACTCAGTCGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS CCA 72 bp | GTGCAGGTTTGTTACATATGTATACATGCGCCATGTTaGTGTGCTGCACCCATTAACTTGTCATTTACATTA | + |
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Preference number: 6 (lower is better) Translates to: VQVCYICIHAPC*CAAPINLSFTL Trigger: TAATGTAAATGACAAGTTAATGGGTGCAGCACACCAACATGGCGCATGTATACATATGTAACAAACCTGCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652251.1 |
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| CDS TCA 72 bp | GCTTTCATGAACTCCATTCAAACATATGCATGTTGCTaGGATATAGTATGGTGCTTAATATCGCTTTATGAA | + |
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Preference number: 6 (lower is better) Translates to: AFMNSIQTYACC*DIVWCLISLYE Trigger: TTCATAAAGCGATATTAAGCACCATACTATATCTCAGCAACATGCATATGTTTGAATGGAGTTCATGAAAGC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443479.1 |
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