Pregenerated sensors for LINC01672 (Homo sapiens)
Ensembl gene IDs: ENSG00000228750Ensembl transcript IDs: ENST00000414210.5, ENST00000421469.3, ENST00000432429.5, ENST00000635029.1, ENST00000635092.2, ENST00000654537.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGAGGGTGGCAGATAGAGTCAGTGAGGGAGGGGCGGGAGACAGATaGCGGAGAGCTTTCGGGTCATGGCAGAGACAGGCTGGCACCCTG | + |
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Preference number: 5 (lower is better) Translates to: ERVADRVSEGGAGDR*RRAFGSWQRQAGTL Trigger: CAGGGTGCCAGCCTGTCTCTGCCATGACCCGAAAGCTCTCCGTCATCTGTCTCCCGCCCCTCCCTCACTGACTCTATCTGCCACCCTCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432429.5 |
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| CDS GCA 90 bp | ACAAGTGTCTCCACAGCAGACCAGATGCTCCCGGAGAGCCCCTCCTaGCCACGTCCACGCTGGGTGATGGCCATGTCATTAGCCACCAGA | + |
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Preference number: 5 (lower is better) Translates to: TSVSTADQMLPESPS*PRPRWVMAMSLATR Trigger: TCTGGTGGCTAATGACATGGCCATCACCCAGCGTGGACGTGGGCAGGAGGGGCTCTCCGGGAGCATCTGGTCTGCTGTGGAGACACTTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000414210.5 ENST00000421469.3 ENST00000635092.2 ENST00000654537.1 |
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| CDS CCA 90 bp | GCAGACCAGATGCTCCCGGAGAGCCCCTCCTGCCCACGTCCACGCTaGGTGATGGCCATGTCATTAGCCACCAGAAGCTTTATCTGGGTA | + |
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Preference number: 5 (lower is better) Translates to: ADQMLPESPSCPRPR*VMAMSLATRSFIWV Trigger: TACCCAGATAAAGCTTCTGGTGGCTAATGACATGGCCATCACCCAGCGTGGACGTGGGCAGGAGGGGCTCTCCGGGAGCATCTGGTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000414210.5 ENST00000421469.3 ENST00000635092.2 ENST00000654537.1 |
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| CDS CCA 90 bp | ATGCTGAGATTTTCCAGGGTGGCCCGGGCAGGGCTCACTGAGATGTaGGGACAGGCTGAGAATGGGGGAGTGGGCATCGAATCATGCAGA | + |
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Preference number: 5 (lower is better) Translates to: MLRFSRVARAGLTEM*GQAENGGVGIESCR Trigger: TCTGCATGATTCGATGCCCACTCCCCCATTCTCAGCCTGTCCCCACATCTCAGTGAGCCCTGCCCGGGCCACCCTGGAAAATCTCAGCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000432429.5 |
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| CDS TCA 90 bp | CATGCACATGCCAAAACTAAGAGAAAGCCTGAAGAATGTGGGACATaGGGAGCTGGGATGTTCCTGGGTCGCTCCACGCTTCATGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: HAHAKTKRKPEECGT*GAGMFLGRSTLHES Trigger: TGACTCATGAAGCGTGGAGCGACCCAGGAACATCCCAGCTCCTCATGTCCCACATTCTTCAGGCTTTCTCTTAGTTTTGGCATGTGCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000414210.5 ENST00000421469.3 ENST00000432429.5 ENST00000635029.1 ENST00000635092.2 ENST00000654537.1 |
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| CDS CCA 90 bp | CTGGGATGTTCCTGGGTCGCTCCACGCTTCATGAGTCAGGCAGGCTaGAATGTGGTTGAAAATCAGGGAGTTATGGATACACATTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: LGCSWVAPRFMSQAG*NVVENQGVMDTHSK Trigger: TTTGGAATGTGTATCCATAACTCCCTGATTTTCAACCACATTCCAGCCTGCCTGACTCATGAAGCGTGGAGCGACCCAGGAACATCCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000414210.5 ENST00000421469.3 ENST00000432429.5 ENST00000635029.1 ENST00000635092.2 ENST00000654537.1 |
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| CDS TCA 90 bp | AAAGCGGCGGATTCTGTGAACCCCCTAAATGTCCAGATTCCTTCATaGATTTCAAGAGTGGTTATTGTGTGCCAAGTATATATCAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: KAADSVNPLNVQIPS*ISRVVIVCQVYIRR Trigger: GCGCCTGATATATACTTGGCACACAATAACCACTCTTGAAATTCATGAAGGAATCTGGACATTTAGGGGGTTCACAGAATCCGCCGCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000421469.3 ENST00000635092.2 |
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| CDS TCA 90 bp | AGCGGGATTTATGGGATCTCCTGGTTTTTGCCTTTATTGATCTGTTaGCATTTACATGCACATGCCAAAACTAAGAGAAAGCCTGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: SGIYGISWFLPLLIC*HLHAHAKTKRKPEE Trigger: TTCTTCAGGCTTTCTCTTAGTTTTGGCATGTGCATGTAAATGTCAACAGATCAATAAAGGCAAAAACCAGGAGATCCCATAAATCCCGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000414210.5 |
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| CDS TCA 90 bp | GATTTATGGGATCTCCTGGTTTTTGCCTTTATTGATCTCACCTGTTaGCATTTACATGCACATGCCAAAACTAAGAGAAAGCCTGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: DLWDLLVFAFIDLTC*HLHAHAKTKRKPEE Trigger: TTCTTCAGGCTTTCTCTTAGTTTTGGCATGTGCATGTAAATGTCAACAGGTGAGATCAATAAAGGCAAAAACCAGGAGATCCCATAAATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654537.1 |
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| CDS GCA 72 bp | TCCACAGCAGACCAGATGCTCCCGGAGAGCCCCTCCTaGCCACGTCCACGCTGGGTGATGGCCATGTCATTA | + |
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Preference number: 6 (lower is better) Translates to: STADQMLPESPS*PRPRWVMAMSL Trigger: TAATGACATGGCCATCACCCAGCGTGGACGTGGGCAGGAGGGGCTCTCCGGGAGCATCTGGTCTGCTGTGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000414210.5 ENST00000421469.3 ENST00000635092.2 ENST00000654537.1 |
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| CDS CCA 72 bp | ATGCTCCCGGAGAGCCCCTCCTGCCCACGTCCACGCTaGGTGATGGCCATGTCATTAGCCACCAGAAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: MLPESPSCPRPR*VMAMSLATRSF Trigger: AAAGCTTCTGGTGGCTAATGACATGGCCATCACCCAGCGTGGACGTGGGCAGGAGGGGCTCTCCGGGAGCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000414210.5 ENST00000421469.3 ENST00000635092.2 ENST00000654537.1 |
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| CDS CCA 72 bp | CGGCAGTGCCAACGAGATTCGCTGATGTGCCAGACATaGGCTCTGAGAGAGCGGGGAGGTCTTCGGCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: RQCQRDSLMCQT*ALRERGGLRLQ Trigger: CTGAAGCCGAAGACCTCCCCGCTCTCTCAGAGCCCATGTCTGGCACATCAGCGAATCTCGTTGGCACTGCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432429.5 |
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| CDS CCA 72 bp | CGCGGTGGGTGGCGTGAAGTGCGGGGAGATCCTAGATaGATGTGTTTGACGGCAGTGCCAACGAGATTCGCT | + |
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Preference number: 6 (lower is better) Translates to: RGGWREVRGDPR*MCLTAVPTRFA Trigger: AGCGAATCTCGTTGGCACTGCCGTCAAACACATCCATCTAGGATCTCCCCGCACTTCACGCCACCCACCGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432429.5 |
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| CDS TCA 72 bp | CGGCTTCAGCAAACGGAAGACAGAGCCGCGATTAATTaGGACGAGGAGTCAGCAGAAGCAGCTGTTGACATT | + |
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Preference number: 6 (lower is better) Translates to: RLQQTEDRAAIN*DEESAEAAVDI Trigger: AATGTCAACAGCTGCTTCTGCTGACTCCTCGTCTCAATTAATCGCGGCTCTGTCTTCCGTTTGCTGAAGCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432429.5 |
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| CDS TCA 72 bp | TCAGGGAGTTATGGATACACATTCCAAAGTCCCCGGTaGCATGTTCAGAATGAACGGAACTCCATGACAGGC | + |
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Preference number: 6 (lower is better) Translates to: SGSYGYTFQSPR*HVQNERNSMTG Trigger: GCCTGTCATGGAGTTCCGTTCATTCTGAACATGTCACCGGGGACTTTGGAATGTGTATCCATAACTCCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000414210.5 ENST00000421469.3 ENST00000432429.5 |
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| CDS TCA 72 bp | ATACACATTCCAAAGTCCCCGGTGACATGTTCAGAATaGACGGAACTCCATGACAGGCAAAAACAACAGCCC | + |
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Preference number: 6 (lower is better) Translates to: IHIPKSPVTCSE*TELHDRQKQQP Trigger: GGGCTGTTGTTTTTGCCTGTCATGGAGTTCCGTTCATTCTGAACATGTCACCGGGGACTTTGGAATGTGTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000414210.5 ENST00000432429.5 |
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| CDS CCA 72 bp | AGGCAGGCTGGAATGTGGTTGAAAATCAGGGAGTTATaGATACACATTCCAAAGTCCCCGGTGACATGTTCA | + |
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Preference number: 6 (lower is better) Translates to: RQAGMWLKIREL*IHIPKSPVTCS Trigger: TGAACATGTCACCGGGGACTTTGGAATGTGTATCCATAACTCCCTGATTTTCAACCACATTCCAGCCTGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000414210.5 ENST00000421469.3 ENST00000432429.5 ENST00000635029.1 ENST00000635092.2 ENST00000654537.1 |
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| CDS TCA 72 bp | TCCACGCTTCATGAGTCAGGCAGGCTGGAATGTGGTTaGAAATCAGGGAGTTATGGATACACATTCCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: STLHESGRLECG*KSGSYGYTFQS Trigger: ACTTTGGAATGTGTATCCATAACTCCCTGATTTTCAACCACATTCCAGCCTGCCTGACTCATGAAGCGTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000414210.5 ENST00000421469.3 ENST00000432429.5 ENST00000635029.1 ENST00000635092.2 ENST00000654537.1 |
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| CDS TCA 72 bp | AGTATATATCAGGCGCTGATCTGGGCACTCACCTGTTaGCATTTACATGCACATGCCAAAACTAAGAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: SIYQALIWALTC*HLHAHAKTKRK Trigger: CTTTCTCTTAGTTTTGGCATGTGCATGTAAATGTCAACAGGTGAGTGCCCAGATCAGCGCCTGATATATACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635092.2 |
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| CDS TCA 72 bp | GATTCTGTGAACCCCCTAAATGTCCAGATTCCTTCATaGATTTCAAGAGTGGTTATTGTGTGCCAAGTATAT | + |
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Preference number: 6 (lower is better) Translates to: DSVNPLNVQIPS*ISRVVIVCQVY Trigger: ATATACTTGGCACACAATAACCACTCTTGAAATTCATGAAGGAATCTGGACATTTAGGGGGTTCACAGAATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000421469.3 ENST00000635092.2 |
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